New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi 5537 =NA (NA)17 (0.120)
+CAGCGCCTGATGCGACGCTGGCGCGT		 10/144 16.1 NA intergenic (+7/+146) yaaX/yaaA DUF2502 family putative periplasmic protein/peroxide resistance protein, lowers intracellular iron
?NC_000913_3_bme_pgi 832304 = NA (NA)noncoding (16/98 nt) RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 225 total aligned reads displayed.

CACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTG  >  NC_000913_3_bme_pgi/5438‑5636
                                                                                                   |                                                                                                   
cACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACaa                                                                                                     <  1:1780330/100‑1 (MQ=255)
  ccTACACGGACCGCCGCCACCGCCGCGCCACCATAAGGAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAAt                                                                                                   >  2:4170398/1‑100 (MQ=255)
     acacGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGcc                                                                                                >  1:789040/1‑100 (MQ=255)
      cacGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCg                                                                                               <  2:3608493/100‑1 (MQ=255)
       acGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCgg                                                                                              <  1:3022299/100‑1 (MQ=255)
       acGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCgg                                                                                              <  1:1903852/100‑1 (MQ=255)
        cGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCggg                                                                                             <  1:4220171/100‑1 (MQ=255)
        cGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCggg                                                                                             >  1:3139677/1‑100 (MQ=255)
        cGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCggg                                                                                             >  1:2337087/1‑100 (MQ=255)
         ggACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCggg                                                                                             >  1:3246340/1‑99 (MQ=255)
         ggACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGt                                                                                            <  1:1512633/100‑1 (MQ=255)
         ggACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGt                                                                                            <  2:1979722/100‑1 (MQ=255)
          gACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGt                                                                                            >  1:3498276/1‑99 (MQ=255)
           aCCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTaa                                                                                          >  1:4484829/1‑100 (MQ=255)
            ccgccgCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAAc                                                                                         <  1:2066519/100‑1 (MQ=255)
             cgccgcCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAAc                                                                                         <  2:475132/99‑1 (MQ=255)
              gccgccACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAAc                                                                                         >  2:1337432/1‑98 (MQ=255)
              gccgccACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACaa                                                                                       >  1:4741129/1‑100 (MQ=255)
                 gccACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAACCATCACCGCTAAACGACACATGCCGGGTAACCATc                                                                                     >  2:1015315/1‑99 (MQ=255)
                 gccACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATc                                                                                     >  2:3742955/1‑99 (MQ=255)
                   cACGGCCGCGCCACCATAAGAAAGCTCCTCATGATGATCACGGCGGTCATGGTCCACGCAAACATGGCCGCTAAATGACAGATGCCGGGTAACAATccag                                                                                  >  2:3997709/1‑98 (MQ=255)
                   cACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCgg                                                                                  <  2:2269845/100‑1 (MQ=255)
                   cACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCgg                                                                                  >  2:1757024/1‑100 (MQ=255)
                   cACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCgg                                                                                  <  2:3782212/100‑1 (MQ=255)
                   cACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCg                                                                                   <  2:3485122/99‑1 (MQ=255)
                    aCCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGc                                                                                 <  1:3613571/100‑1 (MQ=255)
                     ccgccgCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCgg                                                                                  >  1:2843933/1‑98 (MQ=255)
                     ccgccgCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCa                                                                                <  2:331985/100‑1 (MQ=255)
                     ccgccgCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCa                                                                                >  2:1590903/1‑100 (MQ=255)
                      cgccgcGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCCCCGCTACACGACAAATGCCGGGTAACCATCCGGCAt                                                                               >  2:3815680/1‑100 (MQ=255)
                      cgccgcGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCAt                                                                               >  2:2569241/1‑100 (MQ=255)
                        ccgcGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTc                                                                             <  1:53291/100‑1 (MQ=255)
                           cgcCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAgc                                                                          >  1:1819036/1‑100 (MQ=255)
                            gcCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAgcg                                                                         >  2:2105436/1‑100 (MQ=255)
                            gcCACCATAAGAAAGCCCCTCATGATCATCACGGCGGTCATGGTCCAGGCACACATCCCCGCTAAATGACAAATGCCGGGTAACAATCCGGCCTTCcgcg                                                                         >  2:3665791/1‑100 (MQ=255)
                             ccaccaTAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTTCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACTATCCGGCATTCAgcg                                                                         <  2:4670997/99‑1 (MQ=255)
                             ccaccaTAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAgcgc                                                                        >  2:250987/1‑100 (MQ=255)
                             ccaccaTAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAgcgc                                                                        >  1:1245060/1‑100 (MQ=255)
                              caccaTAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGcc                                                                       <  2:662401/100‑1 (MQ=255)
                              caccaTAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGcc                                                                       <  1:4063982/100‑1 (MQ=255)
                               accaTAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCt                                                                      <  1:187022/100‑1 (MQ=255)
                                 caTAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGa                                                                    <  1:1010779/100‑1 (MQ=255)
                                 caTAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGa                                                                    <  1:3413809/100‑1 (MQ=255)
                                 caTAAGAAAGCGCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTg                                                                     <  2:1732057/99‑1 (MQ=255)
                                  aTAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGAt                                                                   >  1:4116528/1‑100 (MQ=255)
                                   tAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATg                                                                  <  2:3148651/100‑1 (MQ=255)
                                   tAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCCAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATg                                                                  >  2:4602362/1‑100 (MQ=255)
                                     aGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGc                                                                 >  1:3548349/1‑99 (MQ=255)
                                      gAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGa                                                               >  1:2714089/1‑100 (MQ=255)
                                           ctcctcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTg                                                          <  1:995646/100‑1 (MQ=255)
                                             cctcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGt                                                                                            >  1:3068908/1‑64 (MQ=255)
                                              ctcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTa                                                                                           <  2:3059044/64‑1 (MQ=255)
                                              ctcATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGgcg                                                       <  2:3413153/100‑1 (MQ=255)
                                                   gATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCt                                                  >  1:2051509/1‑100 (MQ=255)
                                                    atcatcACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCt                                                  <  1:155181/99‑1 (MQ=255)
                                                       atcaCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGTGACGCTGGCGCGTCTTAt                                               >  2:108387/1‑99 (MQ=255)
                                                       atcaCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTAt                                               >  2:4308656/1‑99 (MQ=255)
                                                       atcaCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATc                                              <  1:707111/100‑1 (MQ=255)
                                                       atcaCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATc                                              <  2:1683503/100‑1 (MQ=255)
                                                        tcaCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAATAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCa                                             <  2:2835996/100‑1 (MQ=255)
                                                          aCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGt                                                    >  2:38619/1‑91 (MQ=255)
                                                          aCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAg                                            <  2:1436031/99‑1 (MQ=255)
                                                          aCGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAg                                            >  1:1974693/1‑99 (MQ=255)
                                                           cggcggTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTc                                                   <  1:38758/91‑1 (MQ=255)
                                                                 tCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGt                                    <  1:4622057/100‑1 (MQ=255)
                                                                 tCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGt                                    >  2:1161090/1‑100 (MQ=255)
                                                                  cATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGt                                    >  1:1135345/1‑99 (MQ=255)
                                                                    tGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTaa                                 >  1:1397649/1‑100 (MQ=255)
                                                                     ggTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCACCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAAt                                >  1:4646152/1‑100 (MQ=255)
                                                                      gTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCCGGCCTACTTTAAtt                               >  2:3683117/1‑100 (MQ=255)
                                                                      gTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAAtt                               >  1:266131/1‑100 (MQ=255)
                                                                      gTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTCATCAGGCCTACGTTAAt                                <  2:3234483/99‑1 (MQ=255)
                                                                         cAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTg                            >  1:1596242/1‑100 (MQ=255)
                                                                         cAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTg                            <  2:1579389/100‑1 (MQ=255)
                                                                          aGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGc                           <  2:2403357/100‑1 (MQ=255)
                                                                          aGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGc                           <  2:525467/100‑1 (MQ=255)
                                                                          aGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGc                           <  1:931861/100‑1 (MQ=255)
                                                                           ggCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGTCCTACGTTAATTCTGc                           >  1:4708007/1‑99 (MQ=255)
                                                                           ggCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGc                           <  2:4215582/99‑1 (MQ=255)
                                                                             cAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGTGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAat                        <  1:108770/100‑1 (MQ=255)
                                                                                  aTCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATAtt                   <  2:4466800/100‑1 (MQ=255)
                                                                                   tCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTg                  <  1:2577851/100‑1 (MQ=255)
                                                                                   tCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTg                  <  2:2731565/100‑1 (MQ=255)
                                                                                   tCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTg                  <  1:2448081/100‑1 (MQ=255)
                                                                                   ncACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATAtt                   >  1:2926203/2‑99 (MQ=255)
                                                                                     aCCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGaa                >  1:1720663/1‑100 (MQ=255)
                                                                                      ccGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAAt               >  2:4462941/1‑100 (MQ=255)
                                                                                       cGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATc              <  1:653545/100‑1 (MQ=255)
                                                                                       cGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATc              <  2:2252554/100‑1 (MQ=255)
                                                                                       cGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATc              >  2:3197714/1‑100 (MQ=255)
                                                                                            aaTGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCa          <  1:3934486/99‑1 (MQ=255)
                                                                                            aaTGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCa          <  2:3437569/99‑1 (MQ=255)
                                                                                            aaTGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCAt         <  2:1857626/100‑1 (MQ=255)
                                                                                             aTGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATg        <  2:3884456/100‑1 (MQ=255)
                                                                                             aTGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATg        >  2:592055/1‑100 (MQ=255)
                                                                                              tggcAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGc       >  1:2212488/4‑100 (MQ=255)
                                                                                              tGACAAATGCCGGGTAACTATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGc       <  1:2197466/100‑1 (MQ=255)
                                                                                              tGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGc       >  1:3328345/1‑100 (MQ=255)
                                                                                              tGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGc       <  2:2894700/100‑1 (MQ=255)
                                                                                                 cAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCttt    <  2:1263160/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CACCTACACGGACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTG  >  NC_000913_3_bme_pgi/5438‑5636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.