mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 21 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006584 | 3,849,298 | 0 | C | T | 70.5% | 78.6 / 37.8 | 63 | R121C (CGC→TGC) | LY180_18350 | transcriptional regulator |
| * | CP006584 | 1,643,582 | 0 | G | A | 64.6% | 58.1 / 58.7 | 66 | intergenic (‑242/‑61) | LY180_07760/LY180_07765 | sulfatase/transposase |
| * | CP006584 | 269,438 | 0 | T | C | 45.6% | 8.4 / 50.2 | 47 | L55P (CTC→CCC) | LY180_01185 | hypothetical protein |
| * | CP006584 | 269,452 | 0 | C | T | 44.7% | 13.8 / 49.7 | 48 | Q60* (CAA→TAA) | LY180_01185 | hypothetical protein |
| * | CP006584 | 269,492 | 0 | C | T | 43.8% | 20.8 / 47.3 | 49 | T73I (ACC→ATC) | LY180_01185 | hypothetical protein |
| * | CP006584 | 3,513,965 | 0 | T | C | 43.8% | ‑0.6 / 16.9 | 16 | intergenic (‑141/+198) | tldD/LY180_16725 | protease TldD/membrane protein |
| * | CP006584 | 269,443 | 0 | T | G | 42.5% | 4.6 / 61.6 | 47 | F57V (TTT→GTT) | LY180_01185 | hypothetical protein |
| * | CP006584 | 269,453 | 0 | A | G | 42.5% | 9.9 / 53.0 | 47 | Q60R (CAA→CGA) | LY180_01185 | hypothetical protein |
| * | CP006584 | 4,254,025 | 0 | G | A | 42.0% | 23.1 / 50.0 | 50 | A28A (GCG→GCA) | LY180_20340 | hypothetical protein |
| * | CP006584 | 269,400 | 0 | G | A | 41.3% | 25.4 / 40.5 | 46 | E42E (GAG→GAA) | LY180_01185 | hypothetical protein |
| * | CP006584 | 269,116 | 0 | C | T | 40.9% | 15.4 / 40.0 | 45 | R121R (CGC→CGT) | LY180_01180 | hypothetical protein |
| * | CP006584 | 269,403 | 0 | T | C | 39.1% | 20.0 / 43.3 | 46 | G43G (GGT→GGC) | LY180_01185 | hypothetical protein |
| * | CP006584 | 4,253,976 | 0 | T | A | 38.3% | 49.2 / 69.2 | 61 | F12Y (TTC→TAC) | LY180_20340 | hypothetical protein |
| * | CP006584 | 4,253,902 | 0 | C | T | 31.8% | 84.6 / 49.8 | 68 | intergenic (+24/‑40) | LY180_20335/LY180_20340 | hypothetical protein/hypothetical protein |
| * | CP006584 | 1,643,618 | 0 | C | G | 28.6% | 106.4 / 50.5 | 64 | intergenic (‑278/‑25) | LY180_07760/LY180_07765 | sulfatase/transposase |
| * | CP006584 | 4,253,879 | 0 | G | A | 28.6% | 105.4 / 34.3 | 63 | intergenic (+1/‑63) | LY180_20335/LY180_20340 | hypothetical protein/hypothetical protein |
| * | CP006584 | 269,044 | 0 | T | C | 27.7% | 56.5 / 29.0 | 48 | C97C (TGT→TGC) | LY180_01180 | hypothetical protein |
| * | CP006584 | 269,041 | 0 | T | C | 25.5% | 63.8 / 24.8 | 48 | D96D (GAT→GAC) | LY180_01180 | hypothetical protein |
| * | CP006584 | 1,643,642 | 0 | A | G | 25.0% | 109.1 / 41.5 | 72 | intergenic (‑302/‑1) | LY180_07760/LY180_07765 | sulfatase/transposase |
| * | CP006584 | 4,254,136 | 0 | C | T | 23.3% | 67.8 / 18.9 | 44 | N65N (AAC→AAT) | LY180_20340 | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006584 | 4739807 = | 41 (1.460) | 5 (0.180) | 5/568 | 2.7 | 11.8% | intergenic (+48/‑432) | LY180_22625/fimA | tyrosine recombinase/type‑1 fimbrial protein subunit A |
| ? | CP006584 | 4740121 = | 35 (1.290) | intergenic (+362/‑118) | LY180_22625/fimA | tyrosine recombinase/type‑1 fimbrial protein subunit A | |||||
| * | ? | CP006584 | = 3815239 | 26 (0.930) | 6 (0.220) | 3/562 | 3.4 | 19.4% | intergenic (‑652/+261) | LY180_18180/LY180_18185 | peptide ABC transporter substrate‑binding protein/tRNA‑Pro |
| ? | CP006584 | = 4312417 | NA (NA) | intergenic (‑191/+57) | LY180_20660/LY180_20665 | hypothetical protein/transcriptional regulator | |||||
| * | ? | CP006584 | = 3675951 | 34 (1.210) | 3 (0.110) | 3/586 | 3.6 | 9.0% | coding (2284/2448 nt) | LY180_17595 | glycogen phosphorylase |
| ? | CP006584 | 4110793 = | 27 (0.960) | coding (569/1047 nt) | LY180_19600 | lipopolysaccharide biosynthesis protein WzzE | |||||
| * | ? | CP006584 | = 258127 | 33 (1.180) | 3 (0.110) | 3/586 | 3.6 | 7.1% | coding (1379/1476 nt) | LY180_01140 | type VI secretion protein |
| ? | CP006584 | = 4456821 | 45 (1.600) | intergenic (+160/‑93) | alr/LY180_21295 | alanine racemase/aromatic amino acid aminotransferase | |||||