Predicted mutation
evidence seq id position mutation annotation gene description
JC CP016816 311,173 Δ6 bp intergenic (‑96/‑213) JCVSYN2_01300 ← / → JCVSYN2_01305 hypothetical protein/30S ribosomal protein S21

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 311155 =111 (0.060)1038 (0.670) 191/210 1.4 92.8% intergenic (‑78/‑236) JCVSYN2_01300/JCVSYN2_01305 hypothetical protein/30S ribosomal protein S21
?CP016816 = 311148 69 (0.040)intergenic (‑71/‑243) JCVSYN2_01300/JCVSYN2_01305 hypothetical protein/30S ribosomal protein S21

Only 100 of 1408 total aligned reads displayed.

GTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGT  >  CP016816/311028‑311282
                                                                                                                               |                                                                                                                                   
gtaccagttgtaataactaatccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatt                                                                                                                                     <  2:3346404‑M1/1‑1 (MQ=255)
  accagttgtaataactaatccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattat                                                                                                                                   <  2:1289287‑M1/3‑1 (MQ=255)
  accagttgtaataactaatccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacatacattat                                                                                                                                   <  1:499241‑M1/3‑1 (MQ=255)
   ccagttgtaataactaatccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattata                                                                                                                                  <  2:1496382‑M1/4‑1 (MQ=255)
    cagttgtaataactaatccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatat                                                                                                                                 <  1:3110736‑M1/5‑1 (MQ=255)
     agttgtaataactaatccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatata                                                                                                                                <  2:2158507‑M1/6‑1 (MQ=255)
      gttgtaataactaatagaaatgaacttaaaattgtaattaagtttttaattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatatat                                                                                                                               >  2:826462‑M1/122‑128 (MQ=255)
       ttgtaataactaatccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatatata                                                                                                                              >  2:2884621‑M1/121‑128 (MQ=255)
          taataactaatacaaattaacttaaaattttaattaactatttcatttaacacaacccatattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatatatata‑‑t                                                                                                                         >  1:3472561‑M1/118‑128 (MQ=255)
           taataactaatcaaaatgaacataaaattgtaattaacttttcattttacacacaccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatatatata‑‑ta                                                                                                                        >  1:1063926‑M1/117‑128 (MQ=255)
           aataactaatccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaacacatatataacatacattcattatatatata‑‑ta                                                                                                                        <  1:3825863‑M1/12‑1 (MQ=255)
           aataactaatccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatatatata‑‑ta                                                                                                                        <  2:64428‑M1/12‑1 (MQ=255)
            ataactaatccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatatatata‑‑tat                                                                                                                       <  1:4036025‑M1/13‑1 (MQ=255)
               actaatccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatatatata‑‑tatata                                                                                                                    <  2:3666496‑M1/16‑1 (MQ=255)
                   atccaaatgaacttaaaattgtaattaactttttcattttacacacccattattaaaaaataaaatacttgttacatactattcaaaacatatataacatacattcattatatatata‑‑tatatatata                                                                                                                <  2:2364561‑M1/20‑1 (MQ=255)
                    tccaaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATa‑‑a                                                                                                             >  2:2735425‑M1/108‑128 (MQ=255)
                       aaatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGc                                                                                                          <  1:2806636‑M1/24‑1 (MQ=255)
                        attATAATTTTTATTAACTTTTTCATTTTATACACACATAATTATAAAAAAAAAAATATTTTATATACTATTCTAAACATATATAAAATACATTCATtatatatatatatata‑‑tataatgcaatatgt                                                                                                           <  1:293392/127‑12 (MQ=255)
                        aatgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATgct                                                                                                         <  2:1223207‑M1/25‑2 (MQ=255)
                        aatgaacttaaaattgtaattaactttttaattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCa                                                                                                         >  2:2111477‑M1/104‑128 (MQ=255)
                          tgaacttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaccatatataacatacattcagTATATATATA‑‑TATATATATA‑‑ATGAAat                                                                                                       <  1:1982759‑M1/27‑1 (MQ=255)
                           taacttaaaattgtaattaaatttttcattttacactacaattattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATACATATATATATA‑‑ATGCaa                                                                                                        >  1:3884452‑M1/101‑128 (MQ=255)
                           gaaattaaaattgtaattaactttttcatattagacacccattattaataaataaaattctttttacataggattcaaaacatatataacattaattcatTATATATATA‑‑TATATATATA‑‑ATGCAata                                                                                                      >  2:2631433‑M1/101‑128 (MQ=255)
                           aaaaTATTAAATAAATTTTTCATTTTACACACCTATTATTAAAAAATAAAATACTTGTTACATACGATTCAAAAAATATATAAAATACATTCTTTATATATATATATA‑‑TATATATATA‑‑ATGCAATATg                                                                                                    <  2:3409659/128‑1 (MQ=255)
                             acttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGAAATATg                                                                                                    <  1:2214787‑M1/30‑1 (MQ=255)
                             acataaaattgtaattaactatttcattttacaaaccccttattaaaaaataaaatacttgttacataagattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATg                                                                                                    >  2:3919580‑M1/99‑128 (MQ=255)
                              cttaaaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGt                                                                                                   <  2:565744‑M1/31‑1 (MQ=255)
                              cataaaatagaaattaactttttcattttacacacaccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGt                                                                                                   >  1:1733868‑M1/98‑128 (MQ=255)
                                taaaattgtaattaactttttcattttacacacaccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTaa                                                                                                 >  2:3315436‑M1/96‑128 (MQ=255)
                                  taattgtaattaactatttcattttacacacaccttattaaataataaaatacttgttacatactattcaaaacatatataacattcattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAAt                                                                                               >  1:353506‑M1/94‑128 (MQ=255)
                                  aaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAAt                                                                                               <  2:1068747‑M1/35‑1 (MQ=255)
                                  aaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAAt                                                                                               <  1:2489783‑M1/35‑1 (MQ=255)
                                  aaattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑AAGCAATATGTAAAt                                                                                               <  1:2580848‑M1/35‑1 (MQ=255)
                                   aattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATa‑‑a                                                                                                             <  2:3244564‑M1/21‑1 (MQ=255)
                                   aattgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAatt                                                                                              <  2:164140‑M1/36‑2 (MQ=255)
                                     ttgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATATAATGCAATATGTAAATg                                                                                              <  2:2225652‑M1/38‑1 (MQ=255)
                                     ttgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGaa                                                                                            <  2:1577310‑M1/38‑1 (MQ=255)
                                      tgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcattatatat                                                                                                                               >  2:3726289‑M1/90‑96 (MQ=255)
                                      tgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑TTTCAATATGTAAATGaaa                                                                                           <  1:2137832‑M1/39‑1 (MQ=255)
                                      tgtaattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGaaa                                                                                           >  1:974722‑M1/90‑128 (MQ=255)
                                      agaaattaactttttcattatacacacacattattaaaaaataaaatactttttacataagattcaaaaaatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGaaa                                                                                           >  2:1886071‑M1/90‑128 (MQ=255)
                                        taattaactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAat                                                                                         <  1:3204258‑M1/41‑1 (MQ=255)
                                        taattaactttttcattttacacacccattattaaaaaataaaataattgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAat                                                                                         >  1:3966590‑M1/88‑128 (MQ=255)
                                            taactttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATAAtaatatcg                                                                                     <  2:3483165‑M1/45‑3 (MQ=255)
                                             aactttttcattttacacaccccttattaaaaaataaaatacttgtaacatacgattcaaaaaatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATAATATATATAAAATAAAATatgat                                                                                    <  2:384100‑M1/46‑3 (MQ=255)
                                              actttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATATAATTCAATATGTAAATGAaaatatag                                                                                     <  2:1797394‑M1/47‑3 (MQ=255)
                                               ctttttcattttacacacaccttattaaaaaataaaatacttgttacatactattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGtat                                                                                  >  1:273801‑M1/81‑128 (MQ=255)
                                               ctttttaattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGtat                                                                                  >  2:1392343‑M1/81‑128 (MQ=255)
                                               atttttcattttacacaccaattattaaaaaataaaatacttgttaaataagattcaaaaaatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGtat                                                                                  >  1:2669223‑M1/81‑128 (MQ=255)
                                                 ttttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatactttcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATCAATATATGTTataa                                                                                <  1:1841776‑M1/50‑1 (MQ=255)
                                                  tttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATAA‑‑AGCAATATGTAAATGAAAATATGGtataatat                                                                             <  1:609572‑M1/51‑2 (MQ=255)
                                                   ttcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑AATATATATTTAATTAAATATATTATataata                                                                              <  2:1442061‑M1/52‑1 (MQ=255)
                                                    tcattttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATAAATA‑‑AAACAATATATAAATGAAAATATTATATAATAg                                                                             <  2:1137526‑M1/53‑1 (MQ=255)
                                                     cattttacaaaccacttattaaaaaataaaatacttgttacataagattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGc                                                                            >  1:3297563‑M1/75‑128 (MQ=255)
                                                       ttttaaaaacaccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCaa                                                                          >  1:2992211‑M1/73‑128 (MQ=255)
                                                        tttacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATatgttataatataaaa                                                                         <  1:3051797‑M1/57‑6 (MQ=255)
                                                         ttaaaatcaacttattaaaaaataaaatacttgttacataatattaaaaacatatataaaatacattaatTATATATATA‑‑TATATATA‑‑‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGt                                                                      >  2:3997076‑M1/71‑128 (MQ=255)
                                                          tacacaccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAAAGAAAATATGTTATAATAGCAACCg                                                                       <  1:3632082‑M1/59‑1 (MQ=255)
                                                             acacacattattaaaaaataaaataattgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGttt                                                                    >  2:3110736‑M1/67‑128 (MQ=255)
                                                                ccccttattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATATAATTCAATATGTAAAAGAAAATATGTTataatagcacactttta                                                                   <  2:3787680‑M1/65‑9 (MQ=255)
                                                                  cattattaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                               >  2:519833‑M1/62‑128 (MQ=255)
                                                                   cttattaaaaaataaaatacttgttacataagattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAg                                                              >  1:235912‑M1/61‑128 (MQ=255)
                                                                     aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATA‑‑TATATATATA‑‑ATGCAATATTTAAATTCAAATATTGTATACTATAAACCATATATAAACTaaaaa                                                        >  2:2537069/1‑128 (MQ=255)
                                                                      attaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaa                                                           >  1:2287312‑M1/58‑128 (MQ=255)
                                                                      attaaaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaa                                                           >  2:449007‑M1/58‑128 (MQ=255)
                                                                        taaaaaataaaatacttgttacatatgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaa                                                         >  2:1961521‑M1/56‑128 (MQ=255)
                                                                          aaaaataaaatacttgttacatacgattcaaaacatatataacatacattcatATATATATA‑‑TATATATAAA‑‑ATGCAATATTTAAATGAAAATATGATATAATATCAACAGTTAATAAATTaaaaaaa                                                      <  1:1566956‑M1/75‑1 (MQ=255)
                                                                           aaaataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaaaa                                                      <  2:1349276‑M1/76‑1 (MQ=255)
                                                                              ataaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAg                                                   >  1:1270348‑M1/50‑128 (MQ=255)
                                                                                aaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTAAAATATAAACCGTTTAAAAAGTAAAAAaatataa                                                 <  2:882641‑M1/81‑4 (MQ=255)
                                                                                aaaatacttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATAAATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTa                                                 <  1:887708‑M1/81‑1 (MQ=255)
                                                                                aaaaaactttttaaatacgattcaaaacatatttaacatacattcatTATATATATA‑‑TATATATA‑‑‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGtaat                                               >  2:3582820‑M1/48‑127 (MQ=255)
                                                                                    tactagttacataatattaaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                             >  1:1334102‑M1/44‑128 (MQ=255)
                                                                                     acttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATATAATGCAATATGTAAATGAAAATATGGTATAATATCAACCTTTTATAAATTAAAAAAATAGTAAat                                              <  1:335256‑M1/86‑1 (MQ=255)
                                                                                      cttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATTTAAATGAAAATATTTTATAATAGCAACAGTTTATAAAGAAAAAAAATATTAAAtata                                           <  2:2952121‑M1/87‑1 (MQ=255)
                                                                                      cttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCTTTTATAAAGTAAAAAAATATtaaattta                                           <  1:2053358‑M1/87‑4 (MQ=255)
                                                                                       ttgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtac                                          >  2:2806636‑M1/41‑128 (MQ=255)
                                                                                        tgttacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtact                                         <  2:2436358‑M1/89‑1 (MQ=255)
                                                                                         gttacatacgattcaaaacatatataacatacattaatTATATATATA‑‑TATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtac                                          >  1:1797394‑M1/39‑128 (MQ=255)
                                                                                           tacatacgattcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATATCAACAGATTATAAACTAAAAAAATAGTAAATATaatact                                      <  1:705377‑M1/92‑1 (MQ=255)
                                                                                                cAAAACATATATAACATACATTCATTATATATATATATATA‑‑TA‑‑‑AAATA‑‑A‑‑‑AATATATAAATTAAAATATTTTATAATAGAAACATTATATAAATTAAAAAAATAATAAATATAATAATTATATACtaaa                           >  1:1004376/1‑127 (MQ=255)
                                                                                                    ttcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTATATATACTACTTAtttaata                             <  2:926163‑M1/101‑4 (MQ=255)
                                                                                                     tcaaaacatatataacatacattcatTATATATATA‑‑TATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGCAAACGTTTATAAAGTAAAAAAATAATAAATATAATACATATTTACt                              <  2:2028398‑M1/102‑1 (MQ=255)
                                                                                                     tcaaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                            >  1:794050‑M1/27‑128 (MQ=255)
                                                                                                      caaaaaatatataaaataaattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaat                           >  1:1120742‑M1/26‑128 (MQ=255)
                                                                                                       aaaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                                  <  1:1689338‑M1/64‑1 (MQ=255)
                                                                                                        aaacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCTTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaataa                         <  1:2433895‑M1/105‑1 (MQ=255)
                                                                                                        aaaaatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaataa                         >  2:727934‑M1/24‑128 (MQ=255)
                                                                                                         aacatatataatatagattcatTTTATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaa                        >  2:3021353‑M1/23‑128 (MQ=255)
                                                                                                         aacatatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaa                        >  1:3721811‑M1/23‑128 (MQ=255)
                                                                                                            atatataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATTAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATc                     <  1:1172757‑M1/109‑1 (MQ=255)
                                                                                                            atatataacatacattcatTATATATATA‑‑TATATATAAA‑‑ATGCAATATCTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATAATACTTATTTACTAATAAAata                     <  2:1700916‑M1/109‑2 (MQ=255)
                                                                                                               tataacatacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATTTTATAATATCAACATTTTATAAAGTAAAAAAATAGTAAATATAATACTTATATAATAATAAAATCTAt                  <  1:3774508‑M1/112‑1 (MQ=255)
                                                                                                                      tacattcattatatatata‑‑tatatatata‑‑AAGAAATATGTATATGAAAATATGTTATAATAGCAACCGTTTATATAAAAAAAAAATATTAAATATAATAATAATATAAAAATAAAAACTATTtttatt           >  2:3151427/10‑128 (MQ=255)
                                                                                                                      tacattcatTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATATCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTAATTATTTACTAATAAAATCTATttttata           <  1:2863404‑M1/119‑2 (MQ=255)
                                                                                                                      taaaatcaatatatatata‑‑tatatatata‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTtttatt           <  1:1618987/120‑1 (MQ=255)
                                                                                                                        cattcatTATATATATA‑‑TATATATATA‑‑TTGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTtttattta         <  1:1933015‑M1/121‑1 (MQ=255)
                                                                                                                             atTATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaaaaaa    <  2:2292730‑M1/126‑1 (MQ=255)
                                                                                                                               TATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGt  >  1:1419157‑M1/1‑128 (MQ=255)
                                                                                                                               TATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGt  <  1:1471901‑M1/128‑1 (MQ=255)
                                                                                                                               |                                                                                                                                   
GTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATA‑‑TATATATATA‑‑ATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAGT  >  CP016816/311028‑311282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.