Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4870T.55.1% 315.5 / inf 481intergenic (+265/‑410)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (101/95);  new base . (49/192);  total (181/300)
Fisher's exact test for biased strand distribution p-value = 1.25e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 497 total aligned reads displayed.

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATA  >  CP016816/202370‑202616
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ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCAC‑‑Ttaaaaattaaaa                                                                                                                       >  1:1581529/1‑128 (MQ=255)
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAAAAAACCCAtt‑‑‑aaaaataaaaa                                                                                                                      >  1:2384500/1‑128 (MQ=255)
   ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑ATGTAGATCCTCGAGATCTATTTTATTATTTTTTT‑ATCTT‑CACAAAT‑AAAAAAAAAAAAAAACC‑‑AATAAAAAATaaaaaaaa                                                                                                                   >  2:3946696/1‑128 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATATATATCCTCTTGATCTAAATAAATATTTGATT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCAAC‑‑‑TAAAAAATaaaaaaaaa                                                                                                                  >  2:1781205/1‑128 (MQ=255)
     atttttAAAGTTAAATTAAAAAAAATAAAATTTATAATTCTTATAATTTTTCACCTGTTTTTTTTTTTTTTTTTTTTTTT‑TTTTT‑CACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaa                                                                                                                  <  1:3610623/124‑1 (MQ=255)
     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAAACCAC‑‑TTAAAAATTaaaaaaaaa                                                                                                                  >  2:3722874/1‑128 (MQ=255)
     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTATTTTTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaa                                                                                                                  >  1:353619/1‑128 (MQ=255)
       agTTAATGTTAATTAAAATAAAATAAAATTAATAATTCTTATAATGTATATCCTCGTTATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaa                                                                                                                <  2:3499841/128‑1 (MQ=255)
        ttttagtttaattaaAATACAATAAAACTAAAAAATCTTAAAATTTACAAACCCCTTAACTATTTTTTTAATTTTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaa                                                                                                               <  2:282167/121‑1 (MQ=255)
        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAATAAAAAAAAAAACAAACACC‑‑‑TAAAAAATtaaaaaaaaaaa                                                                                                               >  1:4550988/1‑128 (MQ=255)
        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAAAAATCCAC‑‑‑TAAAAAATtaaaaaaaaaaaa                                                                                                              >  1:1516758/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCAC‑‑ATTAAAAATTaaaaaaaaaaaaaa                                                                                                             >  2:3693275/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                            >  1:4414297/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCC‑‑‑AATAAAAAATtaaaaaaaaaaaaaaa                                                                                                           >  1:1387722/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                            >  2:4496641/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCACC‑‑ATAAAAATTaaaaaaaaaaaaaaa                                                                                                            >  1:4126298/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAAAAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaa                                                                                                            >  1:4337870/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCCATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑‑AAAAAAAAACAATCCAC‑‑TTAAAAAATaaaaaaaaaaaaaaaa                                                                                                           >  2:1365074/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCTTGATCTATTTATTAATTAGTAT‑ATCTT‑CACAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                                           >  2:3332836/1‑128 (MQ=255)
           aaGGTTAATTAAAATACAATTAAATTAATAATTGTTATAATTTTTCTCCTGGTTTTCTATTTTTTTATTTTTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                            <  1:3774837/128‑1 (MQ=255)
            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                           >  1:2322825/1‑128 (MQ=255)
             tgTTAAATAAAAATCCAAAAAATTAATAATTTTTATAAAGTATACCCTCGTGATCATTTTTTTTATTTTTTT‑ATCTT‑CAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                          <  2:2594895/127‑1 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                          >  2:4079834/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                          >  1:4282127/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAATtaaaaaaaaaaaaaaaaa                                                                                                         >  1:4024746/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAATaaaaaaaaaaaaaaaaaa                                                                                                         >  1:3804957/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATAT‑ATCTT‑CACAAAT‑AAAAAAAAAAAAATAAAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                          >  2:1151235/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTTTTTTATTTGTTT‑ATCTT‑AACAAAT‑AAAAAAAAAACAAAAAC‑‑‑AAAAAAAATtaaaaaaaaaaaaaaaaa                                                                                                         >  2:1676735/1‑128 (MQ=255)
                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:3562647/1‑128 (MQ=255)
                taattaaAATACCATAAAAATATAAATTATTATAAAGTTTTACCTAGGGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaac                                                                                                       <  1:3557710/128‑2 (MQ=255)
                taattaaAAAAAAATAAAAATAATAATTTTTATAATTTTTATCCTCGTGTTTTATTTTTTTATTTTTTT‑TTATT‑AACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                                       <  1:3725962/128‑1 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTATATACTCTTGATCTATTTTTTTATTTGTTT‑ATATT‑AAAAAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:8174/1‑128 (MQ=255)
                 aattaaAATAAAATAAAATTAATAATTCTTATAATGTATATACTCGTTATATATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaact                                                                                                      <  2:1644930/128‑3 (MQ=255)
                 aattaaAAAAAAATAAAATTAATAATTTTTAAAATTTATAACATCTTTTTATATTTTTTTTTTTTTTT‑ATCTT‑AAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                      <  2:4540563/128‑1 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:1302124/1‑127 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTT‑ATCTA‑AACAAAT‑AAAAAAAAAACAAACAACTTAAAAATAaaaaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:2853383/1‑128 (MQ=255)
                    taaAAAACAAAAAAATTTATAATTATTAAAATTTATATCCTCGGGATCTATTTTTTTATTTGTTT‑ATATT‑AACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTaa                                                                                                  <  2:4359749/128‑1 (MQ=255)
                    aaaaaTACCATAAAATTTATAATTCTTATAATTTAGAAAATCTTGAATTATTTTTTTATTTTTTA‑AAAAT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaactaaa                                                                                                   <  2:2997211/127‑6 (MQ=255)
                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:2980086/1‑123 (MQ=255)
                     aaaaTACCATAAACTTAATAATTCTAATAATGTAGATACTCGTTATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaacaaaaa                                                                                                  >  1:1946110/1‑122 (MQ=255)
                      aaaTACAATAAAATTAATAAATATTAAAATTTATATACTAGTTTTCTATTTTTTTATTTTTTT‑ATATT‑CAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                                <  2:3676221/128‑1 (MQ=255)
                        aTAACATAAAATTAATAATTATTATAATTTATATACTTTTGATATATTTTTTTTTTTGTTT‑TTTTT‑AAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                              <  1:3398008/128‑1 (MQ=255)
                         taacATAAAAATTATAATTCTTATAATTTATAACCTCGTGATTAATTTTTTTATTTGTTA‑TTATT‑AACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                             <  2:2926984/125‑1 (MQ=255)
                         atcaaTAAAATTAATAAATCTTAATATGTATAACCCCGTTTTATATTTTTTTTTTTTTTT‑ATATT‑AAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                             <  2:3836549/124‑1 (MQ=255)
                          aacttAAAATTTATAATTCTTATAATGTAGATAATAGTTATATATTTTTTTATTTGTTT‑ATATT‑AAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                           <  2:1003330/124‑1 (MQ=255)
                            attaaaaataataaTTATTATAATTAAGATAAACGTTAAATAATTTTTTATTTTTTA‑AAATT‑AAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                           <  2:1235158/120‑1 (MQ=255)
                              tAAAATTAAAAATTCTAATAATGTACAACCTCGTGATCAATTTTTTTATTTGTTT‑AACTT‑AACAAAT‑AAAAAAAAAACAATCCCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                       <  2:868899/128‑1 (MQ=255)
                              tAAAATTAAAAAATATAATAATTTAAAACCTAGTTATCATATTTTTTATTTGTTT‑ATATT‑CAAAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                       <  2:3363296/128‑1 (MQ=255)
                              aaaaaTTAATAATTTTTATAAATTATATCCTCGTGATATATTTTTTTATTTTTTT‑ATATT‑CACAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                       <  2:4395627/127‑1 (MQ=255)
                                aaCTTTATAATTTTTATAATTTAGATACAAGTTATTTATTTTTTTATTTTTTT‑ATATT‑AAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                     <  2:4128518/128‑1 (MQ=255)
                                 aaataataaATATAATAATTTATATCCTAGTTATCTATTTTTTTATTTTTTT‑AAATT‑AACAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                      <  2:742455/125‑1 (MQ=255)
                                   ttattaATTCTTATAATGTTTTTCCTTTTGATTTTTTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                  <  2:3778651/128‑1 (MQ=255)
                                     aataatTATTTAAATTTATATACTTTTTATATATTTTTTTATTTTTTT‑ATATT‑AAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                               <  2:3646565/128‑1 (MQ=255)
                                                 aaTGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAAACAACTATATTTGATAAAAATGCCttt                                                                    >  1:1167506/1‑126 (MQ=255)
                                                        attatatttatttatttttttattttttT‑TTTAT‑AATAAAT‑TAAAAAAAAAAAATTACC‑‑TTATAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                             <  2:1907504/116‑1 (MQ=255)
                                                        ataatttttatttatttttttattttttT‑TTTTT‑AAAAAAT‑AAAAAAAAAAAAATAACATT‑‑‑AAAAAT‑‑TTAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                            <  1:2116515/116‑1 (MQ=255)
                                                        aTCCTAGTTATATATTTTTTTAATTGTTT‑ATATT‑CAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                             <  2:4034957/128‑1 (MQ=255)
                                                         ttatttttttaaatttttttattttttt‑ATATT‑AAAAAAA‑AAAAAAAAAAAAAAAAACCTT‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                             <  1:4222542/116‑1 (MQ=255)
                                                         tacattttatatatttttttattttttT‑TTATT‑AAAAAAA‑AAAAAAAAAAAAAATCCCCTT‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                             <  2:539468/117‑1 (MQ=255)
                                                         aacacGTGTTCTTTTTTTTTATTAGTTT‑AAATT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑‑TAAAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                            <  1:443830/124‑1 (MQ=255)
                                                          tatagtttttatttttttttttttttT‑ATATT‑AAAAAAA‑AAAAAAAAAAAAATACACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                            <  1:1012030/116‑1 (MQ=255)
                                                          aatcttGATATATTTTTTAATTTTTTT‑AATTA‑AAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                           <  2:212713/123‑1 (MQ=255)
                                                            tCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAAAACAATTTAATAAAATACAATATTATAAcaaaatt                                                        >  2:3462457/1‑123 (MQ=255)
                                                             agttaaattttttttttttttttT‑ATATA‑AAAAAAT‑AAAAAAAAAAAAATAACCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                        <  2:398258/119‑1 (MQ=255)
                                                                tatatttttttttattttttt‑aTATA‑AAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                                     <  2:4164637/122‑1 (MQ=255)
                                                                 ttttttttttttattttttt‑aTAT‑‑‑AAAAAA‑AAAAAAAAAAAAATACCCTTT‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                  <  1:2362556/123‑1 (MQ=255)
                                                                 ttatatttttttattttttT‑ATTTT‑AAAAAAT‑TAAAAAAAAACAATACCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                  <  2:3533305/125‑1 (MQ=255)
                                                                   ttttttttttATTTTTTT‑TAATT‑TAAAAAA‑AAAAAAAAAAAAATACCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                  <  1:3938873/125‑1 (MQ=255)
                                                                   atttttttttATTTTTTT‑TAATT‑AAAAAAA‑AAAAAAAAAAAAATCCACTT‑‑‑ATAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                  <  2:2789934/125‑1 (MQ=255)
                                                                   atATTTTTTTATTTGTTT‑ATATA‑AAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                  <  2:389117/127‑1 (MQ=255)
                                                                   aattttttttattttttt‑aTATT‑AAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                  <  1:1149412/125‑1 (MQ=255)
                                                                     tattttttATTTGTTT‑ATATT‑AAAAAAA‑AAAAAAAAAAAAAATCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                <  1:1094247/126‑1 (MQ=255)
                                                                     aattttttATTTTTTTAATTTT‑AAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                 <  1:1663211/126‑1 (MQ=255)
                                                                      tttttttattttttt‑aTAAT‑AAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                <  2:580604/128‑1 (MQ=255)
                                                                      tttttttATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAATAACCA‑‑TCTTTTTCTAAAAATTACATATAAAACCACAATTTATTTTTaa                                               >  1:4176209/1‑128 (MQ=255)
                                                                       ttttttATTTTTTT‑AAATT‑AAAAAAA‑AAAAAAAAAAAAAACACCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                               <  2:3656476/128‑1 (MQ=255)
                                                                       ttttttATT‑‑TTT‑ATATT‑AAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                           <  1:2441229/128‑1 (MQ=255)
                                                                        ttttttttTGTTT‑TTTTTATATAAAA‑AAAAAAAAAACAAGCCC‑‑‑TT‑AAAAATTAAAAAAAAAACAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                              <  2:2325103/128‑1 (MQ=255)
                                                                          ttttttTGTTT‑ATATT‑CAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                           <  1:3006469/128‑1 (MQ=255)
                                                                          tttATTTTTTT‑ATATT‑AAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                           <  2:154262/128‑1 (MQ=255)
                                                                            ttattGTTT‑ATATT‑AAAAAAA‑AAAAAAAAAACAATCACATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                        <  2:461539/125‑1 (MQ=255)
                                                                             aTTTTTTT‑ATCTT‑AAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TTAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                                       <  2:2546787/128‑1 (MQ=255)
                                                                             aTTTGTTT‑ATTAT‑ATAAAAA‑AAAAAAATAAAAATTCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAAATCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                        <  1:487933/128‑1 (MQ=255)
                                                                             aTTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAACTAAATTTATAAAAATTCCCTATTAAACCAATTTTTTTTTTTAAAAAAAAat                                       >  1:3424900/1‑128 (MQ=255)
                                                                               tttttt‑ATATT‑AAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                      <  2:2146006/125‑1 (MQ=255)
                                                                                   tt‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTATTTTTATTAAAATTCACTATTATACAACATTTTATTTTTAAAATATGTAATTGAc                                 >  2:2414479/1‑128 (MQ=255)
                                                                                   tt‑ATCAT‑CAAAAAT‑AAAAAAAAAAAAATCCACTT‑‑‑ATAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                   <  2:2085589/128‑1 (MQ=255)
                                                                                    t‑ataTT‑AACAAAA‑AAAAAAAAAAAAAACCC‑‑AATAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                  <  2:4204703/128‑1 (MQ=255)
                                                                                    t‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAACAAAATTAATTAAAATTACAATATAAAACAAATTTTATTTTTAAAAAAATATTTTTAc                                 >  1:3704368/1‑128 (MQ=255)
                                                                                     aatataaaaaaaaa‑aaaaaaaaaaaaATACCATT‑‑‑AAAAATT‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                  <  2:4445111/118‑1 (MQ=255)
                                                                                      taatttaaaaaaT‑AAAAAAAAAACAATCCAATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACAAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                <  1:3507974/119‑1 (MQ=255)
                                                                                         tt‑CACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑‑TAAAAACAAAAAATATTTAATAAAATTCCAAATTAAAACACATTTAAATTTTAAAAAAATATATTAActaaaa                            >  1:4075929/1‑123 (MQ=255)
                                                                                            aaaaaaT‑AAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                           <  2:4287864/125‑1 (MQ=255)
                                                                                              caAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTCATTTTTAAAATAAGATATTGACATAatata                         <  2:1088386/128‑1 (MQ=255)
                                                                                              aaaaT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                        <  2:145685/127‑1 (MQ=255)
                                                                                               aaaT‑AAAAAAAAAAAAATACCATT‑‑‑AAAAATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAACACATTTTATTTTTAAAATAAGATATTGACATAatatata                       <  1:17349/128‑1 (MQ=255)
                                                                                                 aT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAAAAAACACTATTTATTAAAAATAAAAATTATAACAAATTTTATTTTAAAAAAAAAAAATTAAAATAttatata                       >  2:3402786/1‑128 (MQ=255)
                                                                                                        aaaaaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAATATTTTTATTAAAATTCCATATTAAACCAAATTTTATTTTTAAAATAATATATTTAAAAAATATaaataaaata                >  1:3871763/1‑128 (MQ=255)
                                                                                                          aaaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑‑‑AAAAACAAACTAAAATTATTAAAATTCCATATTAAACAAAATTTTATTTTTAAAAAAATAAATTAAAATAATATATATATAaaatata            >  2:2262456/1‑128 (MQ=255)
                                                                                                                        ttAAAATTTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta    <  2:3114022/128‑1 (MQ=255)
                                                                                                                        |                                                                                                                                 
ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATA  >  CP016816/202370‑202616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑