Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP016816 20,041 Δ175 bp intergenic (‑762/‑201) JCVSYN2_00065 ← / → JCVSYN2_00070 hypothetical protein/tetracycline resistance ribosomal protection protein Tet(M)

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP016816 20041 20215 175 2335 [0] [5] 2340 JCVSYN2_00065/JCVSYN2_00070 hypothetical protein/tetracycline resistance ribosomal protection protein Tet(M)

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 200400 (0.000)2122 (1.090) 223/232 0.5 100.0% intergenic (‑761/‑376) JCVSYN2_00065/JCVSYN2_00070 hypothetical protein/tetracycline resistance ribosomal protection protein Tet(M)
?CP016816 20216 = 1 (0.000)intergenic (‑937/‑200) JCVSYN2_00065/JCVSYN2_00070 hypothetical protein/tetracycline resistance ribosomal protection protein Tet(M)

Only 100 of 2335 total aligned reads displayed.

AGATAAAAGGTAGTATTTGTTGGCGATCCCCCTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATAATTTTATATTAAAAAATTTAAATTATAATTATTTTTATAGCACGTGATAATTAAAAGTTAGTGAACAAGAAAACAGTGAAGCACCAGTTTCTGAACCAAAAGAAGACGAAAAAACAAAAAAAGATTAAGCAATTTATTTGGAAAA  >  CP016816/19913‑20167
                                                                                                                               |                                                                                                                               
 gATAAATGGTAGTATTGGTTGGCGATCACCCTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTa                                                                                                                                <  2:3810986‑M1/128‑2 (MQ=255)
       agctagaaTTTGTTGTAGATCACCCTAGATTATTTTAGATCTTCTGAAAATAAAAACTATTTTTTCTTTAATTTATTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAAttattgtac                                                                                                                          <  2:2966803/125‑8 (MQ=255)
       aGGTAGTATTTGTTGGCGATCCCCCTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtac                                                                                                                          <  1:2582869‑M1/128‑8 (MQ=255)
             taTTTTTTGGCGATCCCCCTAGAGTCTTTTTCATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgc                                                                                                                    <  1:2725407‑M1/128‑14 (MQ=255)
             taTTTGTTGGCGATCCCCCTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgc                                                                                                                    <  1:684164‑M1/128‑14 (MQ=255)
                ttgtttGCGATCCACCTAGAGTCTTTTACATCATCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTATTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacatttgatac                                                                                                                 >  1:415559‑M1/1‑112 (MQ=255)
                ttgttgGCGATCCCCCTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctac                                                                                                                 <  1:840890‑M1/128‑17 (MQ=255)
                  gttgGCGATCCCCCTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctacta                                                                                                               <  1:221571‑M1/128‑19 (MQ=255)
                  gttgGCGATCCCCCTAGAGTCGTTTACATCTTCGGAAAACAATAACTATTTTTTATTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATTTATTTATATTAAAAAATTattgtacagtttctacta                                                                                                               >  1:4425635‑M1/1‑110 (MQ=255)
                   ttgGCGATCCCCCTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactat                                                                                                              >  2:3954976‑M1/1‑109 (MQ=255)
                    tgGCGATCCCCCTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactata                                                                                                             >  2:1388458‑M1/1‑108 (MQ=255)
                        gatgccagtagagtcttTTACATCATCGTAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTATATTATTAATTTATATATTTATATAAAAAAATTattgtacagttgctactataaggg                                                                                                         <  2:116130‑M1/120‑25 (MQ=255)
                         aTCCCCCTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataatgga                                                                                                        >  2:2310766‑M1/1‑103 (MQ=255)
                           cccccTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaa                                                                                                      >  2:1807689‑M1/1‑101 (MQ=255)
                             cccTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaaga                                                                                                    >  2:3342720‑M1/1‑99 (MQ=255)
                               cTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTTTATTAAAAAATTattgtacagttgctactataagggaaagaaa                                                                                                  >  1:1134957‑M1/1‑97 (MQ=255)
                                 agagTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaat                                                                                                >  2:289154‑M1/1‑95 (MQ=255)
                                 agagTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaat                                                                                                >  2:3892366‑M1/1‑95 (MQ=255)
                                 agagTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaa                                                                                                >  1:613380‑M1/1‑95 (MQ=255)
                                  gagTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaa                                                                                               <  1:1823268‑M1/128‑35 (MQ=255)
                                  gagTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaa                                                                                               <  1:3552136‑M1/128‑35 (MQ=255)
                                     tattttaaATCTTCTGAAATCAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATAattgtacagttgctactataagggaaagaaaaaaaga                                                                                            <  1:2336755‑M1/126‑38 (MQ=255)
                                     tatgatacatcTTCGGAAAACAAAAACTATTTTTTCTATAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaaga                                                                                            <  1:3295296‑M1/123‑38 (MQ=255)
                                     tCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaaga                                                                                            <  1:1419170‑M1/128‑38 (MQ=255)
                                      cTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaataagaa                                                                                           >  2:860428‑M1/1‑90 (MQ=255)
                                         ttACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaaga                                                                                        <  1:526717‑M1/128‑42 (MQ=255)
                                         ttACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaaga                                                                                        <  1:3934334‑M1/128‑42 (MQ=255)
                                           aCATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagataaaaagaaagata                                                                                      >  2:7654‑M1/1‑85 (MQ=255)
                                           aCATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagata                                                                                      >  2:4487734‑M1/1‑85 (MQ=255)
                                            cATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatat                                                                                     >  1:1049402‑M1/1‑84 (MQ=255)
                                             aTCTTCGGAAAACAAAAACTATTTTTTCTTTAATATCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatata                                                                                    <  2:2802365‑M1/128‑46 (MQ=255)
                                               cTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataatgga                                                                                                        >  1:3127199‑M1/1‑81 (MQ=255)
                                                     aaaaCAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtat                                                                            >  1:3620268‑M1/1‑75 (MQ=255)
                                                     aaaaCAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtat                                                                            >  2:4039097‑M1/1‑75 (MQ=255)
                                                        aCAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaa                                                                         >  2:2521685‑M1/1‑72 (MQ=255)
                                                         cAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaag                                                                        <  1:2496745‑M1/128‑58 (MQ=255)
                                                          ataaactATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagt                                                                       <  2:1231445‑M1/126‑59 (MQ=255)
                                                          aaaaaCTATTTTTTCTTTAATTTCTTATTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagt                                                                       <  2:3630643‑M1/128‑59 (MQ=255)
                                                           aacacaatattttctttaatttCTTTTTTTACTTTCAATTTTTAATTTATAAATTTATATTAAAAAATTattgtacagttgatactaaaagggaaagaaaaaaagaaagatataaattgtataaagta                                                                      <  1:4253065‑M1/119‑60 (MQ=255)
                                                            aaaCTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTAAATATAGATATTTATATTAAAAAAATattgtacagttgcaactataagtgaatgaataaaagaaagatataaattgtataaattag                                                                     >  1:1208314‑M1/1‑68 (MQ=255)
                                                              aCTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtaggg                                                                   >  2:4113022‑M1/1‑66 (MQ=255)
                                                              aCTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtaggc                                                                   >  1:3796634‑M1/1‑66 (MQ=255)
                                                               ttaTTTTTTCTTTAATTTATTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggt                                                                  <  1:4003340‑M1/127‑64 (MQ=255)
                                                               cTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggt                                                                  >  1:278238‑M1/1‑65 (MQ=255)
                                                                 aTTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggtta                                                                <  2:3239404‑M1/128‑66 (MQ=255)
                                                                  ttttttCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttag                                                               >  2:3087014‑M1/1‑62 (MQ=255)
                                                                  ttttttCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgta                                                                             >  2:1613975‑M1/1‑62 (MQ=255)
                                                                   tttttCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttaga                                                              <  2:2235305‑M1/128‑68 (MQ=255)
                                                                     tttCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtaggtttagaag                                                            >  2:1994904‑M1/1‑59 (MQ=255)
                                                                      ttgtttaatTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaa                                                                         >  1:3399625‑M1/4‑58 (MQ=255)
                                                                       tCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattttataaattagggttagaagca                                                          >  1:2283768‑M1/1‑57 (MQ=255)
                                                                       tCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagca                                                          >  2:4570348‑M1/1‑57 (MQ=255)
                                                                        cTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggtttgaagcaa                                                         >  1:2067117‑M1/1‑56 (MQ=255)
                                                                        cTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaa                                                         <  2:1314949‑M1/128‑73 (MQ=255)
                                                                           tAATTTCTTTTTTTACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaatta                                                      >  1:1606266‑M1/1‑53 (MQ=255)
                                                                                   ttttttACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattat                                              <  2:522995‑M1/128‑84 (MQ=255)
                                                                                    tttttACTTTCTATTTTTAATTTATATATTTATATAAAAAAATTattgtacatttgctacaataagggaaagaaaaaaagaaagatataaattgtataaagtaggattagaatcaattagtaattatt                                             >  1:2419618‑M1/1‑44 (MQ=255)
                                                                                     ttttACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattatta                                            <  1:1748098‑M1/128‑86 (MQ=255)
                                                                                       ttACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtatggttagaagcaattaataattattatt                                          >  1:1907580‑M1/1‑41 (MQ=255)
                                                                                       ttACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattatt                                          <  2:3501660‑M1/128‑88 (MQ=255)
                                                                                       ttACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattatt                                          <  1:2855217‑M1/128‑88 (MQ=255)
                                                                                       ttACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattatt                                          >  2:2144532‑M1/1‑41 (MQ=255)
                                                                                       ttACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtaggggtagaagcaattaataattattatt                                          <  2:3710760‑M1/128‑88 (MQ=255)
                                                                                        tACTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattatta                                         >  2:2065183‑M1/1‑40 (MQ=255)
                                                                                          cTTTCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaat                                       <  2:603745‑M1/128‑91 (MQ=255)
                                                                                            ttCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgt                                     <  1:3708748‑M1/128‑93 (MQ=255)
                                                                                             tCTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagtgttagaagcaattaataattattattaatgtt                                    >  2:2710278‑M1/1‑35 (MQ=255)
                                                                                              cTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtaggtttagaagcaattaataattattattaatgtta                                   >  2:906866‑M1/1‑34 (MQ=255)
                                                                                              cTATTTTTAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgtta                                   >  2:1063767‑M1/1‑34 (MQ=255)
                                                                                                 tttttAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttattt                                <  2:2404693‑M1/128‑98 (MQ=255)
                                                                                                  ttttAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttt                               <  1:9078‑M1/128‑99 (MQ=255)
                                                                                                   tttAATTTATATATTTATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaatatataaattgtataaagtagggttagaatcaattaataattattattaatgttattttt                              >  2:693915‑M1/1‑29 (MQ=255)
                                                                                                       atttatatatttatatTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctct                          >  1:199718‑M1/1‑25 (MQ=255)
                                                                                                          tatatatttatattaAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttat                       >  2:4383503‑M1/7‑22 (MQ=255)
                                                                                                           atatatttatattAAAAAATTattgtacagttgctaatataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattaatattaatgttatttttctcttata                      <  1:3201614‑M1/123‑108 (MQ=255)
                                                                                                            tatatttatatTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatat                     >  2:1712542‑M1/5‑20 (MQ=255)
                                                                                                             atatttataTTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaagtaataattaatatttatgttatttttctgttttata                    >  1:2636872‑M1/4‑19 (MQ=255)
                                                                                                              tatttatATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagtaagatatatattgtataaagaagggttagaagcaattaataattattattaatgttatttttctcttatatat                   <  1:2979252‑M1/126‑111 (MQ=255)
                                                                                                               atttaTATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatatt                  <  1:1339256‑M1/127‑112 (MQ=255)
                                                                                                                 ttATATTAAAAATTTcttgtaccgttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattca                <  1:464900‑M1/128‑114 (MQ=255)
                                                                                                                 ttATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattca                >  2:1495817‑M1/1‑15 (MQ=255)
                                                                                                                 ttATATTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattca                >  1:3881195‑M1/1‑15 (MQ=255)
                                                                                                                    tatTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatg             <  2:3423561‑M1/128‑117 (MQ=255)
                                                                                                                    tatTAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatg             <  1:1516732‑M1/128‑117 (MQ=255)
                                                                                                                       tAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaa          >  1:3485221‑M1/1‑9 (MQ=255)
                                                                                                                       tAAAAAATTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaa          >  1:4346746‑M1/1‑9 (MQ=255)
                                                                                                                        aaaaaaTTattgtacagttgctactataagtgaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaat         <  2:4260539‑M1/128‑121 (MQ=255)
                                                                                                                         aaaaaTTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaatt        <  1:4510297‑M1/128‑122 (MQ=255)
                                                                                                                         aaaaaTTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaatt        >  1:756621‑M1/1‑7 (MQ=255)
                                                                                                                         aaaaaTTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattca                <  2:3165084‑M1/120‑114 (MQ=255)
                                                                                                                         aaaaaTTattgtacagttgatactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaatt        <  1:3048005‑M1/128‑122 (MQ=255)
                                                                                                                          aaaaTTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaattt       <  2:3010976‑M1/128‑123 (MQ=255)
                                                                                                                          aaaaTTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaatta       <  1:2144532‑M1/128‑123 (MQ=255)
                                                                                                                          aaaaTTattgtacagtagctactataagggaaagaaataaagaaagatataaattgtataaagtagggttagaagcaattaaaaattattattaatgtaattttactcttatatattcaattaaattt       >  1:999885‑M1/1‑6 (MQ=255)
                                                                                                                           aaaTTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaatttt      <  2:2602755‑M1/128‑124 (MQ=255)
                                                                                                                           aaaTTattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaatttt      <  2:1894420‑M1/128‑124 (MQ=255)
                                                                                                                              ttattgtacagttgctactataagggaaagaaaataagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaattttaat   >  2:4173351‑M1/1‑2 (MQ=255)
                                                                                                                              ttattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaattttaat   <  1:1276819‑M1/128‑127 (MQ=255)
                                                                                                                               tattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaattttaatt  >  1:4080771‑M1/1‑1 (MQ=255)
                                                                                                                               tattgtacagttgctactataagggaaagaaaaaaagaaagatataaattgtataaagtagggttagaagcaattaataattattattaatgttatttttctcttatatattcaatgtaattttaatt  <  1:1000478‑M1/128‑128 (MQ=255)
                                                                                                                               |                                                                                                                               
AGATAAAAGGTAGTATTTGTTGGCGATCCCCCTAGAGTCTTTTACATCTTCGGAAAACAAAAACTATTTTTTCTTTAATTTCTTTTTTTACTTTCTATTTTTAATTTATAATTTTATATTAAAAAATTTAAATTATAATTATTTTTATAGCACGTGATAATTAAAAGTTAGTGAACAAGAAAACAGTGAAGCACCAGTTTCTGAACCAAAAGAAGACGAAAAAACAAAAAAAGATTAAGCAATTTATTTGGAAAA  >  CP016816/19913‑20167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: