BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP016816	420,157	2 bp→TT	intergenic (‑440/+402)	JCVSYN2_01895 ← / ← JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,157	0	A	T	99.6%	8928.3 / NA	2825	intergenic (‑440/+403)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (5/7); new base T (1508/1302); total (1513/1312)
Fisher's exact test for biased strand distribution p-value = 5.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP016816	420,158	0	A	T	98.5%	8617.7 / NA	2827	intergenic (‑441/+402)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (4/39); new base T (1509/1275); total (1513/1314)
Fisher's exact test for biased strand distribution p-value = 9.68e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2926 total aligned reads displayed.

AAATTAAATTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATAT  >  CP016816/420031‑420284

||

       attcattcATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATttttaatttta                                                                                                                              >  1:7868512/1‑125 (MQ=255)

       attcattcATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATttttaatttta                                                                                                                              >  2:3146303/1‑125 (MQ=255)

        ttcattcaTACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATttttaattttaa                                                                                                                             <  1:1009341/128‑5 (MQ=255)

          cattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATa                                                                                                                           <  1:6004179/128‑1 (MQ=255)

          cattcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATa                                                                                                                           <  2:1964891/128‑1 (MQ=255)

           attcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTtaataa                                                                                                                          >  1:23611/1‑128 (MQ=255)

            ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                         >  2:4183975/1‑128 (MQ=255)

            ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                         >  1:973714/1‑128 (MQ=255)

            ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                         <  2:7100882/128‑1 (MQ=255)

            ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGATGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                         >  2:2108133/1‑128 (MQ=255)

             tcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACt                                                                                                                        >  1:6777509/1‑128 (MQ=255)

                tACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGaa                                                                                                                     <  1:2822699/128‑1 (MQ=255)

                  cTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAatt                                                                                                                   <  1:7145103/128‑1 (MQ=255)

                   atttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAatta                                                                                                                  <  1:1670766/127‑1 (MQ=255)

                     ttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAattatt                                                                                                                >  1:6639601/1‑128 (MQ=255)

                     ttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAattatt                                                                                                                <  1:7568926/128‑1 (MQ=255)

                     ttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTAATAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAattatt                                                                                                                >  1:5049374/1‑128 (MQ=255)

                      tAGTCTCATAAATCTAAGTATCTAAAATTATTTTATCAATTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTAttt                                                                                                               <  2:5656267/128‑1 (MQ=255)

                       aGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTAtttt                                                                                                              >  2:7336023/1‑128 (MQ=255)

                        gTCTCATAAATCTAAGTTTCATAATTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATATCTGAATTAttttt                                                                                                             <  1:3317060/128‑1 (MQ=255)

                           tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                          >  1:6131830/1‑128 (MQ=255)

                           tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                          >  2:492691/1‑128 (MQ=255)

                           taaTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                          <  1:5885335/126‑1 (MQ=255)

                           taaTAAATCTAAGTTGCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                          <  2:5826781/126‑1 (MQ=255)

                             aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                        <  1:766229/128‑1 (MQ=255)

                             aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                        >  2:5248348/1‑128 (MQ=255)

                             aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                        <  2:3432709/128‑1 (MQ=255)

                              tAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTCAAAtt                                                                                                       >  2:5380271/1‑128 (MQ=255)

                              tAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAtt                                                                                                       <  2:6121500/128‑1 (MQ=255)

                               aaaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTg                                                                                                      <  2:365798/128‑1 (MQ=255)

                               aaaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTg                                                                                                      <  1:193931/128‑1 (MQ=255)

                                aaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGt                                                                                                     <  2:160630/128‑1 (MQ=255)

                                 aTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGtt                                                                                                    <  1:2657967/128‑1 (MQ=255)

                                   cTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTaa                                                                                                  >  2:7246548/1‑128 (MQ=255)

                                       gTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTTAatta                                                                                              >  1:1544445/1‑128 (MQ=255)

                                        tttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattat                                                                                             <  2:6743182/128‑1 (MQ=255)

                                        tttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattat                                                                                             <  1:7737959/128‑1 (MQ=255)

                                         ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTATCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattatt                                                                                            >  2:6620936/1‑128 (MQ=255)

                                         ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAACATTTTTAATTTTAATATCTGAATTATTTGTCAAATTGTTAAattatt                                                                                            >  1:7281709/1‑128 (MQ=255)

                                         ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTCAAATTTTTAAattatt                                                                                            >  2:4617256/1‑128 (MQ=255)

                                         ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGtt                                                                                                    <  1:5275046/120‑1 (MQ=255)

                                         ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGt                                                                                                     >  2:4760160/1‑119 (MQ=255)

                                         ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattatt                                                                                            >  1:545767/1‑128 (MQ=255)

                                          tCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAttt                                                                                           <  2:1756680/128‑1 (MQ=255)

                                           cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                          >  1:1803292/1‑128 (MQ=255)

                                           cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                          >  2:5042880/1‑128 (MQ=255)

                                           cTAAAATTATTTTATCATTTAAAAAAATAATACTTATATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                          <  2:6492329/128‑1 (MQ=255)

                                            tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                         <  2:406451/128‑1 (MQ=255)

                                            tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                         <  1:4228469/128‑1 (MQ=255)

                                             aaaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCa                                                                                        >  2:1313283/1‑128 (MQ=255)

                                             aaaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCa                                                                                        >  2:2889427/1‑128 (MQ=255)

                                                attattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAAt                                                                                     <  2:2258591/128‑1 (MQ=255)

                                                  tattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCa                                                                                   <  2:1127511/128‑1 (MQ=255)

                                                  tattTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCa                                                                                   <  1:3146303/128‑1 (MQ=255)

                                                    ttttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCAtt                                                                                 <  1:3726372/128‑1 (MQ=255)

                                                    ttttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCAtt                                                                                 >  2:5504019/1‑128 (MQ=255)

                                                     tttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTa                                                                                <  2:2754149/128‑1 (MQ=255)

                                                     aaaataaTTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCTAATTGTTAAATTATTTTCAAATCATTa                                                                                >  1:4085394/7‑128 (MQ=255)

                                                       aaTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATc                                                                              <  2:1871134/127‑1 (MQ=255)

                                                        aTCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCt                                                                             >  2:5977701/1‑128 (MQ=255)

                                                          cATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAatt                                                                                                                   <  2:6981866/88‑1 (MQ=255)

                                                          cATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAt                                                                           <  2:5135209/128‑1 (MQ=255)

                                                               aaaaaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATc                                                                      >  1:6436790/1‑128 (MQ=255)

                                                                  aaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑t                                                                  >  1:6314970/1‑128 (MQ=255)

                                                                  aaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑t                                                                  >  1:7413832/1‑128 (MQ=255)

                                                                     ataataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑tttt                                                               >  2:3947260/1‑128 (MQ=255)

                                                                     ataataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑tttt                                                               <  1:1333702/128‑1 (MQ=255)

                                                                      taataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTa                                                              >  1:2207432/1‑128 (MQ=255)

                                                                          aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCt                                                          >  2:3272750/1‑128 (MQ=255)

                                                                          aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCt                                                          >  1:5716662/1‑128 (MQ=255)

                                                                             tttATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATTCTC‑‑G‑‑t                                                   >  2:4349844/1‑128 (MQ=255)

                                                                             tttAATATTTTAAATATTATAAAACAACTACCACTATTTTAAAAAAATTTTAAATT‑TAATAACTGAATTATATTTCAAATTGTTAAATTAATTTCAAATCATTATCAATTAATCAA‑TATTATGCCC‑‑G‑‑t                                                   <  1:298174/128‑1 (MQ=255)

                                                                              tttttatttttaataataGAAAAATACTATCAAT‑TTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATAAA‑TTTTATGCTC‑‑G‑‑tt                                                  <  2:3527880/116‑1 (MQ=255)

                                                                                attaGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑T‑‑tttt                                                >  2:4504154/1‑128 (MQ=255)

                                                                                     ttGTTAAATTATAAAAATACTATCACT‑TTTTTAAAAAATTTTTAATTTTAAAAACTTAATTATTTTTCAAATTGTTAAATTATTTTAAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑ttttttttt                                           <  2:2479268/128‑1 (MQ=255)

                                                                                      ttatatatTATAAAAATACTATCACT‑TTTTTAAAAAATTTTTAATTTTAATAAATTAAATATTTTTAAAATTTTTAAATTATTTTCAAAACATTATCAATTAAACAA‑TTTTATGCTC‑‑G‑‑tttttttttt                                          <  2:6870036/126‑1 (MQ=255)

                                                                                        atatatTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑tttttttttttt                                        >  1:6542342/1‑128 (MQ=255)

                                                                                          atatTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑tttttttttttttt                                      >  1:6910483/1‑128 (MQ=255)

                                                                                          atatTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑tttttttttttttt                                      >  1:3949197/1‑128 (MQ=255)

                                                                                            atTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTGAAATCATTATCTATTAATAAA‑TTTTATGCTC‑‑T‑‑ttattttttttttttt                                    >  1:837232/1‑128 (MQ=255)

                                                                                                 aaaaATAATAGAACA‑TTTTTAAAAAATTTTTAAATATTAAAAATTAATTATTTTTAAATTTGTTAAAATATTTTTAAATAATTTTCTATTAATAAA‑TTTAATTCTC‑‑G‑‑TTTTTTTTTTTTTTTTTACaa                               <  1:3559947/128‑1 (MQ=255)

                                                                                                  aaaCTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑‑TTTTTTTTTTTTTTTTACaaaa                             >  1:4605826/1‑128 (MQ=255)

                                                                                                  aaaCTACTAGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TATTATGCTC‑‑G‑‑TTTTTTTTTTTTTTTTTAaaaa                              >  2:772573/1‑128 (MQ=255)

                                                                                                   aaatattataaat‑tttttAAAAAATTTTTATTTTTAATAAATTTATTTTTTTTAAAATTTTTTAATTATTTTAAAATAAATTTATTTTAATAAATTTTTTTTTTT‑‑T‑‑TTTTTTTTTTTTTTTTTACaaa                              <  1:2074732/116‑1 (MQ=255)

                                                                                                     aaaatataaat‑tttttTAAAAATTTTTAATTTTTATAACTTTATTTTTTTTAAAATTTTTTAATTATTTTAAAATCTTTATCTATTATTAAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTTTTTTTTTACAAAAat                           <  1:5169366/118‑1 (MQ=255)

                                                                                                        ctaGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑ttttttatttttttttttttaaaaaaaa                        >  2:2641520/1‑117 (MQ=255)

                                                                                                        ctaGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑‑TTTTTTTTTTTTTTTTA‑AAAAATATaaa                      >  2:6401358/1‑127 (MQ=255)

                                                                                                          aGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATTCTC‑‑G‑‑‑TTTTTTTTTTTTTTTTAAAAAAATATAatt                     >  2:1496610/1‑128 (MQ=255)

                                                                                                          aGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTTTTTTTTTAAAAAAAaataat                      >  2:3023968/1‑128 (MQ=255)

                                                                                                          aGCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGATC‑‑GT‑TTTTTTTTTTTTTTTTTAAAAAAATATaa                       >  2:7484834/1‑128 (MQ=255)

                                                                                                           gCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAatt                     >  2:873236/1‑128 (MQ=255)

                                                                                                           gCACT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAatt                     >  1:701228/1‑128 (MQ=255)

                                                                                                             aCT‑TTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTTTTTTTTTAAAAAAATATAatttt                   >  1:4426870/1‑127 (MQ=255)

                                                                                                                 tttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑GT‑TTTTTTTTTTTTTTTTTAAAAAAATATAatttatt                 >  2:6272250/1‑128 (MQ=255)

                                                                                                                 tttttAAAAAATTTTTAATTTTAATAAATTAATTATTTTTTAAATTTTTTAATTTTTTTATAATAATTATATATTTATTAA‑TTTTTTTCTCTTT‑‑TTTTTTTTTTTTTTTTTACAAAAATATAatttat                  <  2:3787806/128‑1 (MQ=255)

                                                                                                                    ttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTTTTTTTTAAAAAAATAATAAtttattttat             >  2:7898600/1‑128 (MQ=255)

                                                                                                                     tAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTTTTTTTATTCAAAAAAATAatttatttttta            >  1:2502193/1‑124 (MQ=255)

                                                                                                                     tAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑‑TTTTTTTTTTTTTTTTACAAAAATATAATTTATTttatta           >  2:7608127/1‑128 (MQ=255)

                                                                                                                         aaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑‑TTTTTTTTTTTTTTTTAAAAAAATAAAATTTATTTTTTTAAAct       >  1:4859005/1‑127 (MQ=255)

                                                                                                                            ttttAAATTTTAATAAATTAATT‑TTTTTAAAATTTTTAAAATTTTTTTAAATAATTATATTATAATAAA‑TTTTATTTTT‑‑GTTTTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGt      <  2:2356407/128‑1 (MQ=255)

||

AAATTAAATTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACT‑TTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTATGCTC‑‑G‑‑TTTTTTTTTTTTTTTTTACAAAAATATAATTTATTTGATTAAACGTATAT  >  CP016816/420031‑420284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`