Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4810CA38.8% 290.6 / 60.0 341intergenic (+259/‑416)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (87/101);  new base A (32/87);  total (130/211)
Fisher's exact test for biased strand distribution p-value = 7.49e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 385 total aligned reads displayed.

AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202354‑202603
                                                                                                                                  |                                                                                                                           
agtGAAGTTAGTTTAAATAATATAGTTAAGGTTAATAAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATc                                                                                                                             <  2:44880/128‑1 (MQ=255)
actGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATc                                                                                                                             <  2:2407682/126‑1 (MQ=255)
 gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATATAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATcc                                                                                                                            <  1:151972/128‑1 (MQ=255)
  tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAATccc                                                                                                                           >  1:386337/1‑128 (MQ=255)
  tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTAAC‑AAAT‑AAAAAAAAAACAATcaa                                                                                                                           >  2:305675/1‑126 (MQ=255)
    aagtaagtTTAAATAAAAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAAATCTTAAAATGTAGATCCTCGTGATCAATTTTTTTAT‑TTGTTTATCTTCAC‑AAATAAAAAAAAAAACAATcccc                                                                                                                          <  2:1216985/128‑1 (MQ=255)
    aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCTCCt                                                                                                                         <  2:1740869/128‑1 (MQ=255)
      tttATTGTAAATAATATAGTTAATGTTAATTAAAATAACATAAACTTAATAAATATTATAATTTATATCCTAGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACCtta                                                                                                                       <  2:729839/127‑2 (MQ=255)
      gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACCtta                                                                                                                       >  2:2768213/1‑127 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACCCCtaaa                                                                                                                      >  1:2961743/1‑125 (MQ=255)
         aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCACGTGATCTATTTAATTAT‑TTGATAATATTCAC‑AAAA‑AAAAAAAAAAAAAAcccaaaaaaa                                                                                                                    >  1:528444/1‑121 (MQ=255)
           tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATACACttaaaaat                                                                                                                  >  1:1119358/1‑122 (MQ=255)
               aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACCttaaaaattaaa                                                                                                              >  2:337825/1‑118 (MQ=255)
                   ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGAGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCAAT‑‑‑AAAAATaaaaaaaa                                                                                                       >  2:2485768/1‑128 (MQ=255)
                    taGAGTTAAGGTAAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAATCACATT‑‑‑AAAAATaaaaaaaaa                                                                                                      >  2:2917663/1‑128 (MQ=255)
                     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTAT‑TTTTTTATCTTCAA‑AAAT‑AAAAAAAAAACAAAAACC‑‑TAAAAAAATaaaaaaaaa                                                                                                      >  1:1098895/1‑128 (MQ=255)
                        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTAAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATACC‑‑‑ATAAAAAATaaaaaaaaaaaaa                                                                                                  >  2:2645386/1‑128 (MQ=255)
                        gTTAAGGTTAATTAAAATACCATAAACTTAATAATACTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AACAAAAAACCAATCACC‑‑TTAAAAAGTaaaaaaaaaaaa                                                                                                   >  1:2685811/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                 >  2:1461494/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TATTTTAT‑ATTTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAAACACATAaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:2011260/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTTTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACACCTT‑‑‑AAAAATaaaaaaaaaaaaaa‑aa                                                                                              >  1:1633141/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAAT‑‑‑CAAATAAAAAATaaaaaaaaaaaaaa‑aa                                                                                              >  1:256130/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAAAACAATT‑‑‑AAAAATaaaaaaaaaaaaaa‑aa                                                                                              >  1:1007304/1‑128 (MQ=255)
                            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aa                                                                                              >  1:259960/1‑128 (MQ=255)
                             ttttaattaaAATAAAAAAAAAATAAAAAATAATATAATTTATATCCTCGTGAACTATTTTTTTAT‑TTTTTTATATTAAA‑AAAA‑AAAAAAAAAACAATCCCC‑‑ATAAAAATTaaaaaaaaaaaaaa‑aaa                                                                                             <  2:786421/126‑1 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTTATCTATTTTTTTAT‑TTTTTTATATTAAC‑AAAT‑AAAAAAAAAAAAAT‑‑‑AAAATAAAAAATaaaaaaaaaaaaaa‑aaaa                                                                                            >  2:579191/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACACC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaa                                                                                             >  2:2747456/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTAT‑TTTTTTATATTCAC‑AAAT‑AAAAAAAAAACAAAAAAC‑‑TAAAAAAATaaaaaaaaaaaaaa‑aaa                                                                                             >  1:1773896/1‑128 (MQ=255)
                              gTTAATTAAAATAAAAATAAATTAAAAATTTTTAAAAATTATATACTCGTTTTATATTTTTTTAT‑TTTTTTATATTAAA‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaa                                                                                            <  2:949887/128‑1 (MQ=255)
                              gTTAAATAAAAAAAAAAAAAATTAAAAATTATTATAATTTATTTCCCCGGTTTATATTTTTTTTT‑TTGTTTATAATAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaa                                                                                            <  1:843765/128‑1 (MQ=255)
                               ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATACACTT‑‑‑AAAAATaaaaaaaaaaaaaa‑aaaaaa                                                                                          >  2:1622825/1‑128 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaaaa                                                                                          >  1:3026621/1‑128 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaaaa                                                                                          >  2:2819327/1‑128 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACATT‑‑‑AAAAATaaaaaaaaaaaaaa‑aaaaaaa                                                                                         >  1:685551/1‑128 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaaaa                                                                                          >  2:2873612/1‑128 (MQ=255)
                                 aattaaAATACCATAAAATTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTATTTAA‑TTGTTTATCTTCAA‑AAAT‑AAAAAAAAAACAATACCATTAAAAATaaaaaaaaaaaaaaaaa‑aaaaa                                                                                           >  2:2731135/1‑128 (MQ=255)
                                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAA‑‑ACCAATTAAAAAATaaaaaaaaaaaaaa‑aaaaaaaa                                                                                        >  2:3135483/1‑127 (MQ=255)
                                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAAACC‑‑ATAAAAAATTaaaaaaaaaaaaaa‑aaaaaaaa                                                                                        >  1:1830922/1‑127 (MQ=255)
                                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTATAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAAACCCATTAAAAATAaaaaaaaaaaaaaaaa‑aaaaaa                                                                                          >  2:1295156/1‑128 (MQ=255)
                                  attaaAATACCATAAACTAAATAATTCTTATAATGTAGATACACTTGATCTATTATTTTAT‑TTCTTTATATTCAC‑AAAT‑AAAAAAAAAAAAAACAC‑‑AATAAAAAATaaaaaaaaaaaaaa‑aaaaaaaa                                                                                        >  1:3177480/1‑127 (MQ=255)
                                    ttaaataaaataAAATTAATAATTATTAAAAATTATAAACTTGTTATTTAATTTTTTAT‑TTGTTTATATTTAC‑AAAT‑ATAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaaactaaa                                                                                      <  2:1155069/126‑6 (MQ=255)
                                    taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑‑AAAAAAAAACAATAAAC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaaaaaaaaa                                                                                     >  2:410217/1‑124 (MQ=255)
                                      aaaaaacATAAAAATAAAAATTATTATAATTTATAACCTCGTTATATATTTTTTTAT‑TTTTTTATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTaaa                                                                                    <  1:2759442/122‑1 (MQ=255)
                                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa‑aaaaaaaaaaaa                                                                                    >  1:732158/1‑123 (MQ=255)
                                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTAT‑TTGTTTATCTTCAA‑AAAT‑AAAAAAAAAACAAT‑‑CAAATAAAAAATTaaaaaaaaaaaaaa‑aaaaaaaaaaaa                                                                                    >  1:46182/1‑123 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                   >  2:2422444/1‑128 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                   >  1:2832231/1‑128 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTAaaaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                   >  1:331876/1‑128 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTAT‑TTGTTTATCTTCAC‑AATT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                   >  1:2541369/1‑128 (MQ=255)
                                         taacATAAAATTAAAAATTCTTATAATTTATAATATCTTGCTCTATTTTTTTAT‑TTGTTTATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAaaaca                                                                                <  2:1487744/125‑1 (MQ=255)
                                         tACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAAATAAaaac                                                                                 >  1:3063722/1‑128 (MQ=255)
                                           caaTAAAAATAATAAATCTTATAATTGATATCCTCTTTATATTTTTTTTTTT‑TTTTTTATAATAAA‑AAAT‑AAAAAAAAAACAATCCCCTTAAAAATTAAAAAAAAAAAAAAAA‑AAAAAAACTAAaaac                                                                                 <  2:2550804/126‑1 (MQ=255)
                                           acATAAAATAAAAAATTATTAAAAATTACAACATCCTTATATATTTTTTTAT‑TTGTTTATCTTAAA‑CAAT‑AAAAAAAAAAAAAACCCC‑TTAAAAATTAAAAAAAAAAAAAAA‑AAAAAAACTAAaaaca                                                                                <  1:279247/127‑1 (MQ=255)
                                            cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTAAAAAAAAAAAAAATAAAAAAAAAAAaaacaa                                                                               >  1:1575779/1‑128 (MQ=255)
                                               aacattAAAAATTTTTAAAATGAACAAACTCGTGATAATTTTTTTAAT‑TTGTTAAAATTCAA‑AAAA‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAAT‑AAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTa                                                                         <  2:2702045/124‑1 (MQ=255)
                                                aaCTTAATAATTATTATAAATTATAACCTAGTGATCTATTTTTTTTT‑TTGTTTATAATAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTa                                                                         <  2:3027901/128‑1 (MQ=255)
                                                 aattAATAATT‑TTAATATTAAGATCATCCTGATTAATTTTTTTAT‑TTGTTTTTCTTAAC‑AAAT‑AAAAAATAAAAAATACC‑‑ATTAAAAATTTAAAAAAATAAAAA‑AAAAAAACTAAAAACAAACTCTAt                                                                        <  2:1997638/126‑1 (MQ=255)
                                                 aattAAAAATTCATAAAATTTATATTCACGTGATTTTTTTTTTTTT‑TTTTTTATCTTCAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTa                                                                         <  1:1675869/126‑1 (MQ=255)
                                                 aaatataaatTTTTATATTTTATATACTTGTTTTTTATTTTTTTAT‑TTTTTTATTTTAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTa                                                                         <  1:2407523/121‑1 (MQ=255)
                                                      ataatTCTTATAATGTAGATACTAGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCtt                                                                   <  2:100418/128‑1 (MQ=255)
                                                        aaatCTTATTATTTACTTGCTCGTGATTTATTTTTTTAT‑TTTTTAATATTCAC‑AAAA‑TAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTa                                                                  <  2:2538118/125‑1 (MQ=255)
                                                           tattATAATTTACATCATCCTGATATAATTTTTTAT‑TTGATTATCTTCAC‑AAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                              <  2:1419760/126‑1 (MQ=255)
                                                                   tttatatcatcTTGATCTATTTTTTTTT‑TTTTTTATCTTAAA‑AAAT‑AAAAAAAAAA‑AATACCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                      <  2:2504317/123‑1 (MQ=255)
                                                                        ttattatttatatatttttttat‑tttttTATAATAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                  <  2:182510/116‑1 (MQ=255)
                                                                         taatctttatatATTTTTTAAT‑TTTTTTATCATAAA‑AAAA‑AAAAAAAAAACAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                 <  2:2990024/117‑1 (MQ=255)
                                                                         actactttttttatttttttat‑tttttTATAATAAA‑AAAA‑AAAAAAAAAAAAAATCCCCTT‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                 <  2:387584/117‑1 (MQ=255)
                                                                          aatctttatatatttttttat‑tttttTATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                <  2:1357047/118‑1 (MQ=255)
                                                                           tattttttttttttttttAT‑TT‑TTTATATTAAA‑AAAT‑AAAAAAAAAAAAATCACCTTAAAAATTAAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                <  2:2938804/117‑1 (MQ=255)
                                                                           atatttttattttttttttt‑tttttTATATTAAA‑AAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                              <  2:26110/117‑1 (MQ=255)
                                                                            tttttaaaatatttattAT‑TTTTTTAAATAAAA‑AAAA‑AAAAAAAAAAAAAACCCCTTAAAAATTAAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                <  2:546740/117‑1 (MQ=255)
                                                                              tttattatattttttat‑ttttttatTATAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                            <  2:1101097/119‑1 (MQ=255)
                                                                              tgttatatttttttttt‑tttttTATTTATAA‑AAAT‑AAAAAATATA‑AATTACC‑‑TTAAAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  2:1713310/120‑1 (MQ=255)
                                                                              ggatattATTTTTTTTT‑TTTTTTATGATCAA‑AAAA‑AAAAAAAAAAAAAACCACAT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  1:3134443/122‑1 (MQ=255)
                                                                                 attttttttttttA‑TTGTTTATAATAAA‑AAAA‑AAATAAAAAAAAAACCCCTAAAAAATTAAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  1:2055350/123‑1 (MQ=255)
                                                                                 atattttttttttt‑tttttTATATTAAA‑AAAT‑AAAAAAAAAAAAAT‑AACATTAAAAATTAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                          <  1:2905451/123‑1 (MQ=255)
                                                                                    tttttttttATATTTTTTTTATTAAA‑AAAA‑AAAAAAAAAAAAAAACCCTTAAAAATTAAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                         <  2:3208405/126‑1 (MQ=255)
                                                                                    attttttttAT‑TT‑TTAAAATTAAA‑AAAA‑AAAAAAAAAAAAAAACC‑‑ATTAAAAATAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  2:2219029/126‑1 (MQ=255)
                                                                                     aTTTTTTTTT‑TTTTTTTTTTTAAA‑AAAT‑AAAAAAAAAA‑AATTACCATT‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                    <  2:2292918/128‑1 (MQ=255)
                                                                                     aTTTTTTTTT‑TTGTTTATCATAAA‑AAAA‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  1:2873612/128‑1 (MQ=255)
                                                                                       ttttttAT‑TTG‑TTATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑TAAAAAATTAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:759205/128‑1 (MQ=255)
                                                                                        ttttttt‑tttttTATATTAAA‑AAAA‑AAAAAAAAAACAATACAATTT‑‑AAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                  <  2:498374/128‑1 (MQ=255)
                                                                                        tttttAT‑ATGTTTATATTAAC‑AAAA‑AAAAAAAAAAAAAATCCCCTT‑‑AAAAAT‑TAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                 <  2:856984/128‑1 (MQ=255)
                                                                                         ttttat‑tt‑tttattTTAAAAAAAA‑AAAAAAAAAAAAAAAACCTAAAAAATAAAAATAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  1:761612/128‑1 (MQ=255)
                                                                                             tttatttttATATTAAC‑AAAT‑AAAAAAAAAACAAAACCCAT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                             <  2:623100/122‑1 (MQ=255)
                                                                                             tt‑tttttTATATTAAA‑AAAT‑AAAAAAAAAAAAAAAACC‑‑ATAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                             <  1:2730196/127‑1 (MQ=255)
                                                                                             aT‑TTTTTTATATTCAA‑AAAA‑AAAAAAAAAACAAACCCC‑TTAAAAATTAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                              <  1:2431593/128‑1 (MQ=255)
                                                                                                ttttttATATTAAA‑AAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                           <  2:357453/125‑1 (MQ=255)
                                                                                                ttttttATATTAAA‑AAAA‑AAAAAAAAAAAAATAAC‑‑ATTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                           <  2:3171651/125‑1 (MQ=255)
                                                                                                 tttttATTTTTAA‑AAAT‑AAAAAAAAAAAAAAACCATTT‑‑AATATTTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                          <  2:2116165/126‑1 (MQ=255)
                                                                                                  ttttATTTTTAC‑AAAT‑AAAAAAAAAAAAAATAC‑‑ATTAAAAAAT‑‑AAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                       <  1:2485768/127‑1 (MQ=255)
                                                                                                   ttttttatttaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                       <  1:346510/116‑1 (MQ=255)
                                                                                                     tttacttaaaaaaa‑aaaaaaaaaaaaATCCCAATT‑‑AAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                       <  1:2744151/118‑1 (MQ=255)
                                                                                                     ttatataaaaaaaa‑aaaaaaaaaaaaaaACCCTT‑‑‑AAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                      <  2:2838841/118‑1 (MQ=255)
                                                                                                     tattattaaaaaaT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                     <  2:1925632/118‑1 (MQ=255)
                                                                                                     taaaaataaaaaaa‑aaaaaaaaaaCAATACC‑‑ATTAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                       <  1:1210251/118‑1 (MQ=255)
                                                                                                        tattaaaaaaa‑aaaaaaaaaaaaaaACCCTT‑‑‑AAAAATTAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                   <  2:1542890/121‑1 (MQ=255)
                                                                                                           taataaaa‑aaaaaaaaTACAATCCCCTT‑‑‑AAAAAT‑‑TAATAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACAACATTTTATTTTTAAAATAAGATATTGACataata              <  2:2072583/124‑1 (MQ=255)
                                                                                                                  t‑AAAAAAAAAACAAACCCC‑‑ATAAAAATAAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCATAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata          <  1:263808/128‑1 (MQ=255)
                                                                                                                     aaaaaaaaaCAATACAC‑TTAAAAATTTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatat         <  2:2458485/128‑1 (MQ=255)
                                                                                                                           aaaCAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAAAAAAATGTTATAAAATAACGTTTTTTACAAAATTTTTTTTTTAAAAAAAAAAATTGAAataataattttaatatat  >  1:1327813/1‑116 (MQ=255)
                                                                                                                                  |                                                                                                                           
AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAA‑AAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202354‑202603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑