Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816311,1490T.65.7% 2459.7 / inf 2186intergenic (‑72/‑242)JCVSYN2_01300/JCVSYN2_01305hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand):  ref base T (481/267);  new base . (728/704);  total (1211/975)
Fisher's exact test for biased strand distribution p-value = 1.95e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.04e-06

Only 100 of 3052 total aligned reads displayed.

GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276
                                                                                                                                 |                                                                                                                               
gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAAATTTTTCATTTTACAGACACCTTATTAATAAATAAAATACTTGTTACATACTAATCAAAACATATATAACATAcattcat‑‑t                                                                                                                                 >  2:3849555/1‑128 (MQ=255)
  aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tat                                                                                                                               >  2:2684690/1‑128 (MQ=255)
      gTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatat                                                                                                                           >  1:6114036/1‑128 (MQ=255)
       ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatata                                                                                                                          >  1:2791673/1‑128 (MQ=255)
         gTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatata                                                                                                                        >  2:3372181/1‑128 (MQ=255)
            ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑tatatatatatat                                                                                                                     >  1:2622903/1‑128 (MQ=255)
            ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTAATAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatat                                                                                                                     >  2:8631777/1‑128 (MQ=255)
                ataataaaaattaaattAAAATTTTAATTAAATTTTTTATTTTACACACAACTTATTAAAAAATAAAATACTTGTTACATAAGATTAAAAAAATATATAACATAAATTCAT‑‑tatatatatatatatat                                                                                                                 <  1:5695709/121‑1 (MQ=255)
                 tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatata                                                                                                                >  1:3149263/1‑128 (MQ=255)
                 tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatata                                                                                                                >  1:9476113/1‑128 (MQ=255)
                  aaTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatat                                                                                                               >  1:1000916/1‑128 (MQ=255)
                  aaTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatat                                                                                                               >  2:1244362/1‑128 (MQ=255)
                   aTCCAAATTAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatata                                                                                                              <  1:3566537/128‑1 (MQ=255)
                   aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatata                                                                                                              >  1:812350/1‑128 (MQ=255)
                   aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGATACATACGATTCAAAACATATATAACAAACATTCAT‑‑tatatatatatatatatata                                                                                                              >  1:9626010/1‑128 (MQ=255)
                    tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatat                                                                                                             <  1:7918393/128‑1 (MQ=255)
                    tCCAAATCAAATTAAAATTTTAATTAACTATTTCATTTTACACACCCCTTATTAAAAAATAAAATAATTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatat                                                                                                             <  2:7243627/128‑1 (MQ=255)
                     ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACAATCTA‑‑tataaatatataaatatatata                                                                                                            >  1:6639933/1‑128 (MQ=255)
                     ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatata                                                                                                            >  2:10453464/1‑128 (MQ=255)
                     ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatata                                                                                                            >  1:6269534/1‑128 (MQ=255)
                     ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatata                                                                                                            >  2:4478621/1‑128 (MQ=255)
                        aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataa                                                                                                         >  2:2330099/1‑127 (MQ=255)
                         aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataat                                                                                                        >  1:1076577/1‑126 (MQ=255)
                          ttatcTTAAATTTTTTATTAAATTTTTCTTTTTACACATCAATTTTTATAATATAAAATATTTGTTACATAAGATTCAAAACATATATATATTACATTATT‑‑tatatatatatatatttttatatattg                                                                                                       <  1:1253000/124‑3 (MQ=255)
                          tGAACTTAATATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATCCGATTCAAAACATATATAACATACATACAT‑‑tatatatatatatatatatatataatg                                                                                                       >  1:1537022/1‑125 (MQ=255)
                          tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCATATTAAAAAATAAAATACTTGTTACATACGATTAAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATaa                                                                                                       >  2:6616470/1‑128 (MQ=255)
                             actaataaTTGTAATAAACTTTTTCATTATACACACAACTTATAAAAAAATAAAATACTTTTTACATAAGATTCAAAAAATATATAACATACAATCAT‑‑tatatatatatatatatatatataatgcaa                                                                                                    <  2:4323483/122‑7 (MQ=255)
                             aCTTAAAATTGTAATTAACTTTTTCTTTTTACACACAACTTATTAAAAAATAAAATAATTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgcaa                                                                                                    <  2:4107641/128‑7 (MQ=255)
                             aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgcaa                                                                                                    <  1:7325556/128‑7 (MQ=255)
                             aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatataatgcaata                                                                                                    >  2:2138055/1‑120 (MQ=255)
                             aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAAttc                                                                                                    >  1:6413828/1‑126 (MQ=255)
                               ttAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACAGACGATTCCAAACATATATAACATACAGTCAT‑‑tatatatatatatatatatataatcaaatatt                                                                                                  >  1:5464560/1‑118 (MQ=255)
                               tgaaaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACGTTCAT‑‑tatatatatatatatatatatataattcaata                                                                                                  >  2:10094487/3‑120 (MQ=255)
                                 aaaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatataatccaatatcta                                                                                                >  2:6442335/1‑116 (MQ=255)
                                  aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataaagaaatatgt                                                                                               >  2:3143236/1‑117 (MQ=255)
                                   aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatacaaaataaa                                                                                              >  2:7782575/1‑116 (MQ=255)
                                       gTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATg                                                                                        >  2:5438498/1‑128 (MQ=255)
                                             aaCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATGAAAata                                                                                  >  2:8250782/1‑128 (MQ=255)
                                             aaCTTTTTCATTTTACACACCACTTATTAAAAAATAAAATAATTGTTACATAAGATTAAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAata                                                                                  <  2:9374760/128‑1 (MQ=255)
                                               cTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATATATAAATATTTATATAAAAata                                                                                  >  2:2800577/1‑128 (MQ=255)
                                                 ttttaattttaaAAACAAATTTTTAAAAAATAAAATACTTGTTATATAATATTAAAAACATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGt                                                                              <  1:4305423/128‑1 (MQ=255)
                                                  ttttattttaCACACACCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGta                                                                             <  1:8295774/128‑1 (MQ=255)
                                                   ttCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATA‑ATTA‑‑‑AATATGTAAATTAAAATATGTTataa                                                                          >  1:10197495/1‑128 (MQ=255)
                                                     ttttatatacacCACTTTTTTAAAAATATAATATTTGTTAGATATTTTTTAAAAAATTTATAATATAAATT‑AT‑‑T‑TTTATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTttaa                                                                          <  1:7001069/120‑1 (MQ=255)
                                                      aTTTTACAAAACACTTATTAAAAAATAAAATAATTGTTATATACTATTCAAAACATATATAACATATATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataat                                                                         <  1:9794335/128‑1 (MQ=255)
                                                        tttACAAAAACCTTATTAAAAAATAAAATAATTTTTACATAAGATTAAAAAAATATATAAAATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataat                                                                         <  1:9298536/128‑1 (MQ=38)
                                                           acacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCaa                                                                    >  2:8474968/1‑128 (MQ=255)
                                                             aaacaacTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGt                                                                <  1:8945979/122‑1 (MQ=255)
                                                              cacaCCTTATTAAAAAATAAAATAATTTTTAAATAATATTCAAAAAATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAAc                                                                   <  2:631173/128‑1 (MQ=38)
                                                              cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATTCTATAATATCAACCttt                                                               >  1:4746607/1‑128 (MQ=255)
                                                               acaccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATg                                                                                        <  2:6189392/101‑1 (MQ=39)
                                                                cagattattaAAATATAAAATACTTGTTACATACGATTCAAAAAATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGtt                                                               <  1:4491714/124‑1 (MQ=255)
                                                                caccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTta                                                             <  1:8484756/126‑1 (MQ=255)
                                                                 cccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGttt                                                              <  2:3701532/128‑1 (MQ=255)
                                                                     tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAAAATGCAATATGTAAATCAAAATAAGGTATAATATCAACAGTTtat                                                            >  1:7120034/1‑128 (MQ=255)
                                                                      ataataaaatataatATTTGTTACATAATATTTTAAAAATATATAAAATACATACAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                         <  2:9579519/123‑1 (MQ=255)
                                                                         aaaaaaTAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTa                                                      <  2:195118/128‑1 (MQ=255)
                                                                            aaataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaaa                                                 <  2:5850411/128‑1 (MQ=255)
                                                                            aaataaaataCTTGTTACATACGATTCAAAACATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaa                                                   <  1:530187/128‑1 (MQ=255)
                                                                             aataaaataCTTGTTACATACGATTTAAAACATATATAACATACATT‑AT‑‑T‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaaaa                                                <  2:524353/128‑1 (MQ=255)
                                                                                aaaataTTTGTTAGATACTATTTTAAAAATATATAAAATAAATTATTTATATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaa                                                   <  1:7770099/128‑1 (MQ=255)
                                                                                aaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATTTGGTATAATAGCAACCGTTTATAAAGTAAAAAAAt                                               >  1:5128984/1‑128 (MQ=255)
                                                                                 aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATATAAATCTATATATATATAAAAATATTTTATAAAATCAAACGTATATAAATTaaaaa                                                  >  1:222316/1‑128 (MQ=255)
                                                                                 aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATA‑AA‑GCAATATGTAAATGAAAATATGGTATAATAGCAAACGTTTATAAACTAAAAAAATa                                              >  2:7030575/1‑128 (MQ=255)
                                                                                 aaataATTTTTAAATAATATTAAAAAAATATATAACATATATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATa                                              <  1:10355963/128‑1 (MQ=255)
                                                                                     aattGTTACATAAGATTCAAAATATATATAAAATACAT‑‑‑T‑‑TAT‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGAAACCGTTTATAAAGTAAAAAAATAGTAAat                                        <  1:3782811/126‑1 (MQ=255)
                                                                                     aCTTGTTACATACGATTCAAAACATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaa                                          <  2:7595368/128‑1 (MQ=255)
                                                                                      attGTTAAATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                       <  1:4057515/127‑1 (MQ=255)
                                                                                       ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATTTAAAAGAAAATATTGTATAATAGACACCTTTTATAAAATAAAAAAATAGAAAat                                        >  1:1951101/1‑128 (MQ=255)
                                                                                       ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAat                                        >  1:8635094/1‑128 (MQ=255)
                                                                                        ttttACATACGATTCAAAACATATATAACATACATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                       <  2:1028229/126‑1 (MQ=255)
                                                                                        tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATAAAAAA‑‑ATATATATAAAAAAAAAAATAATATAATATAAAAATTTTAAAAATAAAAAAAATaataaata                                       >  2:9762767/1‑128 (MQ=255)
                                                                                        tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGGTATAATAGCAACCTTTTATAAATTAAAAAAATATTAAata                                       >  1:2393283/1‑128 (MQ=255)
                                                                                        tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATTCAATATGTAAATGAAAATATGTTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAAtata                                     >  2:2463468/1‑128 (MQ=255)
                                                                                        atttatttattaTTTAAAATATATATAACATATAATAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                       <  1:1748407/117‑1 (MQ=255)
                                                                                         gTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAATAAAAAAAATAGTAAatat                                      >  1:2964386/1‑128 (MQ=255)
                                                                                          ttaaataataTTCAAAAAATATATAACATACATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAAtata                                     <  2:5035224/119‑1 (MQ=255)
                                                                                           tACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATA‑A‑AAAGAAATATATAATAGAAAATATTATATAATAGCAACCGTATATAAATTAAAAAAATAAAAAATAaac                                    >  1:3395505/1‑128 (MQ=255)
                                                                                             cATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATATAAATTAAAATATTTTATAATAGCAACAATATATAAATTAATAAAATAGTAAATataata                                  >  2:5629944/1‑128 (MQ=255)
                                                                                               taagATTAAAAACATATATAACATAAATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTa                              <  2:7977203/125‑1 (MQ=255)
                                                                                                actaTTAAAAACATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACtt                               <  2:9186962/125‑1 (MQ=255)
                                                                                                 agattataaaaATATATATAATAAATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGATAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATactact                                <  2:1820869/121‑1 (MQ=38)
                                                                                                   aatatataCATATATATCTAAGATACAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTa                              <  1:6797671/121‑1 (MQ=38)
                                                                                                   aTTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGGTATAATAGCAAACTTTTATAAAGTAAAAAAATAGTAAATATAATACTTa                              >  1:9108466/1‑128 (MQ=255)
                                                                                                    ttCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTAttt                           <  2:7388647/128‑1 (MQ=255)
                                                                                                     tCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTa                          >  2:3534848/1‑128 (MQ=255)
                                                                                                     tCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTa                          <  2:8853374/128‑1 (MQ=255)
                                                                                                       aaaaCATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACt                        <  2:9024561/128‑1 (MQ=255)
                                                                                                          tctaatttaACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaat                     <  2:1627183/121‑1 (MQ=255)
                                                                                                           cATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaata                    <  1:7533175/128‑1 (MQ=255)
                                                                                                           cATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATAATACTTATTTACtaata                    >  1:4959927/1‑128 (MQ=255)
                                                                                                           cATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATATTAAATATACTACTTTTTTACTTATaaa                  >  1:5992337/1‑128 (MQ=255)
                                                                                                              atataACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATATAAAAGAAAATATATTATAATAGAAAACGTTTATAAAGTAAAAAAATATTATATATAAAAATTATATTCTAATaaaa                 >  1:5847115/1‑128 (MQ=255)
                                                                                                              atataACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGATATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATc               >  2:2994449/1‑128 (MQ=255)
                                                                                                                   acatacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCTTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTAACTAATAAAATCTAt            >  1:9932959/1‑128 (MQ=255)
                                                                                                                   acatacatTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAt            <  2:1407668/128‑1 (MQ=255)
                                                                                                                     atacatTCAT‑‑TATATATATATATATATATATATATAAAGAAATATTTAAATGAAAATATTTTATAATATAAACATTTTATAAATTAAAAAAATATTAAATATAATACATATTTACTAAAAAAatatat            >  2:4759666/1‑128 (MQ=25)
                                                                                                                      tacatTCATTATATATATATATATATATATATATATAATGCAATATATAAATGAAAATATGGTAAAATATCAACCGTTTAAAAATTAAAAAAAAACTAAATATACTACTTATTTACTAATAAAATCTa             >  2:6034367/1‑128 (MQ=255)
                                                                                                                              t‑‑tATATATATATATATATATATATATAAAGCAATATGTAAATGAAAATATGTTATAATAGCAACCGTATATAAAGTAAAAAAATATTAAATATTCTAATTATTTACTAATAAAATCTATTtttattaa   >  1:87683/1‑126 (MQ=255)
                                                                                                                                 tatatatatatatatatatatatataATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTTAAAATAAAATATATTTTTATTaaa  >  2:6810772/1‑128 (MQ=255)
                                                                                                                                 |                                                                                                                               
GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑