Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4860T.58.9% 461.9 / inf 908intergenic (+264/‑411)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (52/259);  new base . (184/262);  total (310/598)
Fisher's exact test for biased strand distribution p-value = 2.53e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.86e-06

Only 100 of 990 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑A‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202359‑202612
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aGTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                                    <  1:7192018/128‑1 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATACACtta                                                                                                                                   >  1:1011112/1‑127 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                                   >  1:8551870/1‑127 (MQ=255)
     gtgtAAATAATAGAGTTAAGGTTAATTAATATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACCATCACCttaaaaa                                                                                                                               >  1:8452472/1‑123 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAAAAAT‑AAAAAAAAAACAAACCAC‑‑Taaa‑‑a‑aaataaaa                                                                                                                    >  1:3130976/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑A‑AATTaaaaaaaa                                                                                                                >  1:1019482/1‑128 (MQ=255)
                agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑ATAA‑‑A‑AAATaaaaaaaaa                                                                                                               >  1:2731718/1‑128 (MQ=255)
                   gttaatgttaatTAAAATACCATAAACTATATAATTCATATAAAGTAGAACCTCCTGTTCTATTTTTTTATTTTTTTATCTT‑CACAAAA‑AAAAAAAAAACAAACCCC‑‑TTAA‑‑A‑AATTaaaaaaaaaaaa                                                                                                            <  2:9244581/128‑1 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCAC‑‑ATTAA‑‑A‑AATTaaaaaaaaaaaa                                                                                                            >  1:1185975/1‑128 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCACC‑‑TTAA‑‑A‑AATTaaaaaaaaaaaaa                                                                                                           >  2:8173578/1‑128 (MQ=255)
                     taattttaattaaAATAACATAAAATTAATAATTCTTATAATTTATATCCTCGTTATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑A‑AATTaaaaaaaaaaaaaa                                                                                                          <  2:246714/123‑1 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑A‑AATTaaaaaaaaaaaaaa                                                                                                          >  1:10014824/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTT‑CACAAAT‑AAAAAAAAAAAAATACC‑‑ATTAA‑‑A‑AATTaaaaaaaaaaaaaaa                                                                                                         >  1:2526811/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAA‑‑A‑AATTaaaaaaaaaaaaaaa                                                                                                         >  2:8274931/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTA‑AACAAAT‑AAAAAAAAAACAATCCC‑‑‑ATAA‑‑A‑AAATaaaaaaaaaaaaaaaa                                                                                                        >  1:582078/1‑128 (MQ=255)
                       attttaattaaAATAAAAAAAAATTAAAAAATATTATAATTTAAATCATCTTTAACTATTTTTTTAATTTTTTATAAA‑AACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAA‑‑A‑AATTaaaaaaaaaaaaaaaa                                                                                                        <  2:4125004/125‑1 (MQ=255)
                       aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATAATTTAATTTGTTTAACTT‑AACAAAT‑AAAAAAAAAAAAATACAC‑‑‑TAA‑‑A‑AAATtaaaaaaaaaaaaaaaa                                                                                                       >  2:10201600/1‑128 (MQ=255)
                       aGGTTAATTAAAATAACATAAAATTAATAATTATTATAATTTATATAATATTTATATATTTTATTATTTTTTTATCTT‑AACAAAT‑AAAAAAAAAAAAATAAAC‑‑‑AAA‑‑A‑AAATtaaaaaaaaaaaaaaaa                                                                                                       >  2:7651806/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATATATTTTTTAATTTTTTTATCTT‑CACAAAA‑AAAAAAAAAACAAAAC‑‑‑AATAA‑‑A‑AAATtaaaaaaaaaaaaaaaaa                                                                                                      >  2:3054352/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCATATTGATCTATTTTTTTATTTTTTTATATT‑AAAAAAT‑AAAAAAAAAAAAA‑‑AAAAATTAA‑‑A‑AATTaaaaaaaaaaaaaaaaa                                                                                                       >  1:6170581/1‑128 (MQ=255)
                         gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CACAAAT‑AAAAAAAAAAAAAAAAC‑‑ATAAA‑‑A‑AAATaaaaaaaaaaaaaaaaaa                                                                                                      >  1:2881798/1‑128 (MQ=255)
                          gtaaataaaATACCATAAAATTAATAAATAAAAAAATTTAGATAATCTTGTTATATTTTTTTTTATTTTTATAAT‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑A‑AATTaaaaaaaaaaaaaaaaaaa                                                                                                     <  2:2258738/127‑1 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CACAAAT‑AAAAAAAAAACCATCCCC‑‑TAAA‑‑A‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:7896108/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGAAGATCCACGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAAAAAACCATTAAAA‑‑A‑Taaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:7981354/1‑128 (MQ=255)
                             attaaAAAACCATAAAATAAATAATTGTTTTAATTTTTTTCCTCGTGTTTTATTTTTTTTTTTTTTTATATT‑AAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑A‑AATTaaaaaaaaaaaaaaaaaaaact                                                                                                  <  1:1102860/128‑3 (MQ=255)
                               taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑AACAAAT‑AAAAAAAAAACAAAAACC‑‑TTAA‑‑A‑AATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:7904493/1‑125 (MQ=255)
                                aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAAAAACCC‑‑ATAAA‑‑A‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:6765196/1‑124 (MQ=255)
                                aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATATT‑AACAAAT‑AAAAAAAAAACAAAACC‑‑ATAAA‑‑A‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:4833587/1‑124 (MQ=255)
                                aaaaTACCAAAAACTTATATATTTTTATAAATTATATCCACGTTATATATTTTTTTATTTTTTTTAATT‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAA‑‑A‑AAAAAAAAAAAAAAAAAAAAAAAAACTa                                                                                                <  1:5314267/128‑1 (MQ=255)
                                aaaaTACAAAAAATATAATAATTATTATAATTTTTATCCTCTTTTTATATTTTTTTATTTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTaa                                                                                               <  2:8431198/128‑1 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAA‑‑A‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:8117668/1‑128 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑A‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:4365321/1‑128 (MQ=255)
                                   aTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCCATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑A‑AATTaaaaaaaataaaaaaaaactaaaaacaa                                                                                            <  1:3357850/128‑11 (MQ=255)
                                   aTACCATAAAATTAATAATTTTTTTAATTTTTTTACACGTGTTCTATTTTTTTATTTGTTTAATTA‑AAAAAAA‑AAAAAAAAAAAAATCCCCTTAAAA‑‑A‑TTAAAAAAAAAAAAAAAAAAAAAAACTaaa                                                                                              <  2:8843651/128‑1 (MQ=255)
                                   aTAACATAAAAATAATAATTTTTTAAATTTACAACCACGTTATCAATTTTTTAAATTTTTTATCTT‑CACAAAA‑AAAAAAAAAACAAACCCC‑‑ATAA‑‑A‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAaaac‑a                                                                                         <  2:1789696/128‑1 (MQ=255)
                                   aTAACATAAAAATAATAATTATTAATATTTTGATACAGGTTTTTTTTTTTTTTATTTTTTTTTATT‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑A‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAaaac‑a                                                                                         <  1:5519710/128‑1 (MQ=255)
                                    taacaaaaaaTTTATAATTATTTTAATTTATTTCCTCGTTATATATTTTTTTATTTGTTTATATT‑AAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAA‑‑A‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAaaac‑a                                                                                         <  1:8927445/122‑1 (MQ=255)
                                         tAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAAA‑AAAct                                                                                     >  1:3523151/1‑128 (MQ=255)
                                           taattAATAATTTTTATAATTTTTTTCCTTGTTTTTTATTTTTTTTTTTGTTTATTTT‑CAAAAAA‑TAAAAAAAAAAAAAAACC‑‑TTAA‑‑A‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTa                                                                                  <  1:8690066/125‑1 (MQ=255)
                                           aaatttaaaatTATTAAAATTTATATCATTTTTATTTATTTTTTTATTTTTTTAATTT‑AAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAActct                                                                                   <  2:3790356/120‑1 (MQ=255)
                                            aataaataatACTAATAATTTAGAAACTCGTGTACTATTTTTTTATTTTTTAAAATT‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTa                                                                                  <  2:2041674/124‑1 (MQ=255)
                                                     atCTTTTAATGTAGATCCTCTTGATATATTTTTTTAATTTTTTATAAT‑AAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTaaa                                                                         <  2:9511676/127‑1 (MQ=255)
                                                     atCTTATAAATTATATCCTCGTTATAAATTTTTTTATTTTTTTAAATA‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTaaa                                                                         <  2:7241106/127‑1 (MQ=255)
                                                                gacatacacGTGATCTATTTTTTTATTTTCTTAACTT‑CCAAAAT‑AAAAAAAAAAAAAACCCC‑‑ATAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCctacta                                                              <  1:8821492/120‑1 (MQ=255)
                                                                   ataatatttatttatttttttattttttTATTTT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑ATAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATtata                                                            <  2:91688/116‑1 (MQ=255)
                                                                     tatctttaattttttttttatttttttaATTT‑AAAAAAA‑AAAAAAAAAAAAAAACAC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  2:9867120/116‑1 (MQ=255)
                                                                     cacctttatatatttttttattttttATTATT‑AAAAAAT‑AAAAAAAAAAAAAACCCC‑TTAAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATAcc                                                          <  2:9755295/118‑1 (MQ=255)
                                                                     aactatttttttttttttttttttttTATTAT‑TAAAAAA‑AAAAAAAAAAAAAAACCC‑ATTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATAcc                                                          <  2:3281929/116‑1 (MQ=255)
                                                                      caattttataaTTTTATTATTTTTTTTAAAT‑AACAAAA‑AAAAAAAAAAAAAAACCCATT‑‑A‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACcac                                                        <  2:8970595/118‑1 (MQ=255)
                                                                      atctataaatATTTTTTTAATTTTTTATATT‑AAAAAAT‑AAAAAAAAAA‑AAAAAAATTTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACca                                                         <  2:5881077/119‑1 (MQ=255)
                                                                       tagttatatATTTTATTATTTTTTTATATT‑‑AAAAAA‑AAAAAAAAAACAATAACCATAAAA‑‑A‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACcac                                                        <  2:4981190/120‑1 (MQ=255)
                                                                       catttataaatttttttatttttttATATT‑AAAAAAA‑AAAAAAAAAAAAATACCATTAAAAATA‑AAAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATAc                                                           <  2:5760328/119‑1 (MQ=255)
                                                                        atttttttttttttttATTTGTTTTTATT‑AAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑A‑‑A‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  2:6391261/119‑1 (MQ=255)
                                                                        atttatatatttttttattttttTATTAT‑AAAAAAA‑AAAAAAAAAAAAATAACATT‑‑‑A‑‑A‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  2:266169/121‑1 (MQ=255)
                                                                         tttatatatttttttattttttTTAATT‑AAAAAAT‑AAAAAAAAAAAAATACCC‑‑ATAA‑‑A‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:7838225/122‑1 (MQ=255)
                                                                          ttttttATTTTTTTTTTTTTTTTTATT‑TAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAA‑‑A‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:9086116/123‑1 (MQ=255)
                                                                          ttatatatttttttattttttTAAATT‑AAAAAAT‑AAAAAAAAAACAATACCC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:8578763/123‑1 (MQ=255)
                                                                          ttaaatATTTTTTTAATTTTTTATAAT‑AAAAAAA‑AAAAAAAAAACAAAACCC‑TTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  2:2897633/123‑1 (MQ=255)
                                                                           ttttattttttttattttttta‑AAT‑AACAAAA‑AAAAAAAAAAAAAACCCCAAAAAA‑‑A‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:9139454/122‑1 (MQ=255)
                                                                           ttattATTTTTTTTTTTTTTTA‑AAT‑AAAAAAA‑AAAAAAAAAAAAAAACCCATAAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:937129/124‑1 (MQ=255)
                                                                           tatttatttttttattttttTATATA‑AAAAAAA‑AAAAAAAAAAAAATCACC‑‑TTAA‑‑A‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                  <  1:2092972/124‑1 (MQ=255)
                                                                             tCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAACCTAAAAAC‑AAAATATATTTATTAAAATTCACTATATAACAACattttat                                                 >  1:9618419/1‑128 (MQ=255)
                                                                               tATTTTTTTTTATGTTTATATTAAATAAAT‑AAAAAAAAAAAAA‑‑CCCTTT‑‑A‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAATAAC‑AAACTCTATTTCTTTAAATTCCCTATTATACCACattttatttt                                              <  2:9411732/128‑1 (MQ=255)
                                                                                atttttttatttttttATATT‑AAAAAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑A‑‑A‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:5530634/128‑1 (MQ=255)
                                                                                atttttttatttttttAAATT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  2:10490346/128‑1 (MQ=255)
                                                                                aTTTTTTTATTTGTTTATATT‑AACAAAT‑AAAAAAAAAAAAAATACATT‑‑‑A‑‑A‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  1:9492180/128‑1 (MQ=255)
                                                                                 tttttttatttttttaTTTT‑AAAAAAA‑AAAAAAAAAAAAATACCCATT‑‑‑‑‑A‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  2:3650835/128‑1 (MQ=255)
                                                                                   ttttttttttttTAAATT‑AAAAAAA‑AAAAAAAAAAAAAACCCCATAAAA‑‑A‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:8766996/128‑1 (MQ=255)
                                                                                     ttttttTGTTTTTATT‑‑AAAAAA‑AAAAAAAAAAAAAAACCCATTAAA‑‑A‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                          <  2:5588550/128‑1 (MQ=255)
                                                                                      ttATTT‑TTTATATT‑AACAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑A‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                     <  2:7349133/128‑1 (MQ=255)
                                                                                       tATTTGTTTATAAT‑AAAAAAT‑AAAAAAAAAACAATACCCTT‑‑‑A‑‑A‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                      <  2:1532981/128‑1 (MQ=255)
                                                                                           tttttATATT‑AAAAAAT‑AAAAAAAAAAAAATACCC‑TTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                    <  2:6227069/126‑1 (MQ=255)
                                                                                            tgttttaaattacaAATAAAAAAAAAAACAATACCC‑TTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                     <  2:9622448/117‑1 (MQ=255)
                                                                                             tttATATT‑AAAAAAA‑AAAAAAAAAACAATCCCC‑TTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                  <  2:4526874/128‑1 (MQ=255)
                                                                                              tttatgataaaaaaT‑AAAAAAAAAAAAAAACACTT‑‑‑A‑‑A‑AAATTAAAAAAAAAATAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  2:3154341/117‑1 (MQ=255)
                                                                                              ttATCTA‑TAAAAAA‑AAAAAAAAAAAAATCACC‑‑ATAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  2:5189595/128‑1 (MQ=255)
                                                                                              ttATATT‑TAAAAAA‑AAAAAAAAAAAAATACACATAAAA‑‑A‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAAATCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                  <  1:9023296/128‑1 (MQ=255)
                                                                                                tataataacaAAA‑AAAAAAAAAAAAAAACCC‑TTAAA‑‑A‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  2:8901693/121‑1 (MQ=255)
                                                                                                aatatttaaaaaT‑AAAAAAAAAAAAATAACC‑‑TAAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                               <  2:6997560/119‑1 (MQ=255)
                                                                                                 tattttaaaaaT‑AAAAAAAAAAAAAATTACTTTT‑‑‑‑A‑AATTTTAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                              <  1:3845765/120‑1 (MQ=255)
                                                                                                  attaaaaaaaT‑AAAAAAAAAATAAAACC‑‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  1:1385741/121‑1 (MQ=255)
                                                                                                   tattaaaaaa‑aaaaaaaaaaaaaaaaCCA‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                             <  2:10292770/122‑1 (MQ=255)
                                                                                                   atttaaaaat‑aaaaataaAACAATTAAC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  2:1338663/122‑1 (MQ=255)
                                                                                                    attaaaaaa‑aaaaaaaaaaaaaaaaCCA‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  2:4825332/123‑1 (MQ=255)
                                                                                                     ttaaaaaaataaaaaaaaaCAATAACA‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                           <  1:8076442/118‑1 (MQ=255)
                                                                                                     ttaaaaaa‑aaaaaaaaaaaaaaaaCCCAATAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  2:6499210/124‑1 (MQ=255)
                                                                                                      aaaaaaa‑aaaaaaaaaaaaaaCCCCTTAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  2:1163104/125‑1 (MQ=255)
                                                                                                       caaaaa‑aaaaaaaaaaaaATCCCATT‑‑‑A‑‑A‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                       <  2:6829766/126‑1 (MQ=255)
                                                                                                       aaaaaT‑AAAAAAAAAAAAATCAC‑‑ATTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                        <  1:8305050/126‑1 (MQ=255)
                                                                                                         aaaT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAAACAAAAACAAAACTCAATTTATTAAAAAACACAATTATAACAAATTTTATTTTTAAAAAAAAATATTAAAattata                       >  1:9328745/1‑128 (MQ=255)
                                                                                                         aaaT‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑A‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatat                      <  2:8667480/128‑1 (MQ=255)
                                                                                                          acaaaaaaaaaaaaaaATCACC‑ATAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                       <  1:9750577/124‑1 (MQ=255)
                                                                                                           aaaaaaaaaaaaaaaATACCCTTAAAA‑‑A‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                       <  1:9981309/125‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaaaaaaCCATTT‑A‑‑A‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAAC‑ACACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                   <  1:8196207/127‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaaATACCC‑TTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                    <  2:8081523/127‑1 (MQ=255)
                                                                                                              aaaaaaaaaaaaaaATCCAATTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                    <  2:1010180/128‑1 (MQ=255)
                                                                                                                aaaaaaaaCAATCCCC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAGAAAAAA‑TAAAAAC‑AAACTCTATTTGTTAAAATTACCTATTATAACACATTTTATTTTTAAAATAAAATATTGAAAAAATAAATATCTa               >  2:3923870/1‑128 (MQ=255)
                                                                                                                        cAATCCCC‑‑TTAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAAC‑AAACTCTATTTATTAAAATTCCCTATTATAAAACATTTTATTTTTAAAATAAGATATTTAAATAATATATAGATAatttata        >  2:7982053/1‑128 (MQ=255)
                                                                                                                          aatacaatttAA‑‑A‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat       <  2:10386318/121‑1 (MQ=255)
                                                                                                                           ataacctttAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑ATACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat       <  2:3526572/122‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                  
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑A‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202359‑202612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑