Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,3110CA33.8% 7422.2 / inf 4054intergenic (+275/‑267)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (945/1665);  new base A (1085/245);  total (2125/1929)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 4145 total aligned reads displayed.

TTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTAAA  >  CP016816/165182‑165438
                                                                                                                                          |                                                                                                                                
    attttttTATATTTTTTTTTTATTTAAATTTTTTAAAAATTAATTTTAAATTTTAAAAAAATTTT‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑Ct                                                                                                                                 <  2:8928715/127‑1 (MQ=255)
     ttttttttatttttttttATATTAAAATTTTTAAAAAATAAATTTTAAATTTA‑AAAAAATAG‑‑‑‑‑‑‑A‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTaaa                                                                                                                              <  2:8586937/118‑1 (MQ=255)
      ttttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATATTTGAAATATAAATTTTATTTTTTTTTTTTTATAATTAT‑ATaaa                                                                                                                              >  2:5492695/1‑128 (MQ=255)
         ttaatatTTTTTTTATATTTTAATTTTTAAAAATTTTATTTTTATATTT‑AAAAATTATA‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTaaaaaa                                                                                                                           <  2:4810752/125‑1 (MQ=255)
           ttttttttttttATATTCAAATTTTTAAAAAATTAATTTTAAATTTT‑AAAAAAAA‑‑‑‑‑‑‑‑T‑CTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑g                                                                                                                      <  1:8067766/124‑1 (MQ=255)
           ttttttttttGTATAATTAAATTTTTAAAAAATTTAATTTTACATTT‑AAAAAA‑ATT‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATa                                                                                                                        <  1:9301382/124‑1 (MQ=255)
              atTTTTTTTATATTTAAAATTTATAAAAATTAATTTTTATATTT‑TAAAAATATC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑Ga                                                                                                                     <  2:6906615/128‑1 (MQ=255)
              atTTTTTGTTTTTTCAAATTTTTAAAAAATTAAATTGTACTTGT‑AAAAAAAATG‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑Ga                                                                                                                     <  1:1273257/128‑1 (MQ=255)
              atTTTTTGTATATTCAAATTTTTAAAAAAATAATTTTAAATTTT‑AAAAAATATC‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑Gaa                                                                                                                    <  1:8215944/128‑1 (MQ=255)
               ttttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATAGCTT‑‑‑‑T‑TTTTTTTTTTTTTTTTTTTTATTGTAAATATAAATTTTATTTATTTTGTTTTATAATTAT‑ATAAAAAAATaa                                                                                                                       >  2:4419499/1‑127 (MQ=255)
               ttttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTTTTTTTTTTTATAAGTAT‑ATAAAAAAATA‑Taat                                                                                                                   >  2:7172197/1‑127 (MQ=255)
                   ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTTTTTTATAATTAT‑ATAAAAAAATA‑aaaataa                                                                                                                >  1:5095372/1‑125 (MQ=255)
                    tttttatttaaaTTTTTTAAAAATTAATTTTAAATTTT‑AAAAAATATC‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGaaa                                                                                                              <  2:2014770/119‑1 (MQ=255)
                    tttttattaaaaTTTTTAAAAAATTTATTTTAAATTTT‑TAAAAATA‑T‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGaaa                                                                                                              <  1:4909332/119‑1 (MQ=255)
                    tttataTTAAAATTTTTTAAAAATTATTTTTTTATTTT‑AAAAAATATT‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGaa                                                                                                               <  1:10235065/126‑1 (MQ=255)
                    tGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTTTTTTCTAATTAT‑ATAAAAAAATA‑TAAAGaaa                                                                                                               >  2:6258887/1‑128 (MQ=255)
                     gttttttgaaaTTTTTAAAAAATTTATTTTAACTTTT‑AAAAAATATC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGaaa                                                                                                              <  1:8533238/120‑1 (MQ=255)
                      tataTGCAAATTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATAGCT‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTTTATTTTAAATATAATTTTTATGTTTTTTTTTTTAAAATTTT‑ATAAAAAAATA‑AAAAGaaaa                                                                                                              >  1:9929942/1‑128 (MQ=255)
                      tataTGCAAATTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATTTTAATATAAATTTTATTTATTTTTTTTTATAATTTT‑AAAAAAAAATA‑TAAATTaaaa                                                                                                             >  1:5245070/1‑128 (MQ=255)
                      tataTGCAAATTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTATTTTATAATAAA‑ATAAAAAAAAA‑AAAATTaaaaa                                                                                                            >  1:2819649/1‑128 (MQ=255)
                          tGCAAATTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGTAAATAATAATTTTTTGTATTTTGTTGATTATTTTT‑AAAAAAAAATA‑TAAATGaaaaaaat                                                                                                         >  2:6737622/1‑126 (MQ=255)
                           gCAAATTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATAGCT‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAATTAT‑ATAAAAAAATA‑GAAATAAAAAAata                                                                                                         >  2:9501535/1‑128 (MQ=255)
                             aaaTTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTGTTGTATAATTAT‑ATAAAAAAATA‑GAAAGTAAAAAATAttta                                                                                                     >  2:3517378/1‑126 (MQ=255)
                              aaTTTTTAAAAAATTAATTTTTATTTTT‑TAAAATT‑‑T‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATTATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTa                                                                                                   <  1:3521578/128‑1 (MQ=255)
                               aTTTTTAAAAATTTATTTTTTATTTTT‑AAAAAAT‑TT‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTa                                                                                                   <  1:6145322/128‑1 (MQ=255)
                                   ttaaaaaaTTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTATAAATTAAATAATAATTTTATTTTTTTTTTTTTATAATTTT‑ATAAAAAAAAA‑TAAAGTAATAATTTTTTTTataat                                                                                               >  1:2347225/3‑127 (MQ=255)
                                    ttaaaaattaattTTAATTTTT‑AAAAATTTTT‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAg                                                                                               <  2:7375204/123‑1 (MQ=255)
                                    taaaaaaTTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTAATAATTTAATAATAAATTATATTTATTTT‑TTTAAAAAATATAAAAAAAAAAAA‑AAAATGAAAAAATATTTTTaaaat                                                                                               >  1:5949049/2‑127 (MQ=255)
                                      aaaaattaattTGAACTTGT‑AAAAAATAGCT‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTTTAATTTAAATAAAAATTTTTTTTTTTTTTTTTTATATTTAT‑ATAAAAAAATA‑TAAATAAAAAATTATTTTTaaaatt                                                                                              >  2:10134850/4‑126 (MQ=255)
                                         aattaattTTAAATTGT‑AAAAAATAGC‑‑‑‑‑‑C‑TTTTTTTTTTTTTTTTTTATAATTGAAATAAAATTATTAGTTTTTTTTTTTTCAAAGTA‑‑GAAAAAAAATATTAAATAAAAAATTATTTTTaaaatatata                                                                                          >  1:5789961/1‑122 (MQ=255)
                                         aattaattTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTTAATAATGTAAAAAAAAATTTTAGGTATTTTTTTTAATAAGTAT‑CAAAAAAAATA‑TAAATCAAAAAATATTTTTAAAAGTataaa                                                                                         >  1:4549508/1‑124 (MQ=255)
                                          attaattTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑TCTTTTTTTTTTTTTTTTTTATATTGGAAATAAAAATTTTATGTTTTTTTTTTGCAAATTAT‑CAAAAAAAAAA‑TAAAGAAAAAAAT‑TTTTTaaaatatataa                                                                                         >  1:6836450/1‑121 (MQ=255)
                                          attaattTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTT‑TAATTGAATTATAAATTTTAATTTTTTTTTTTTAAAAATAT‑ATAAAAAAATA‑AAAATTTAAAAATATTTTTAAAATTAATaat                                                                                        >  1:267506/1‑126 (MQ=255)
                                           ttaattTGAACTTGT‑AAAAAATAGCT‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTTTTGTATAAGTAT‑ATAAAAAAATA‑GAAAGTAAAAAATATTTTTAAAATTaaaaa                                                                                         >  2:5145744/1‑125 (MQ=255)
                                           ttaattTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTATTTATTTTTTTTTATAATTAA‑AAAAAAAAATA‑AAAAGTAAAAAATATTTTTAAATGTAATaaa                                                                                        >  1:1886358/1‑126 (MQ=255)
                                            taattTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTAAAATGGAAAAATAAATTTTAGTTTTTTTTTTGTATAATTAA‑AAAAAAAAATA‑AAAAGAAAAAAAAATTTTTAAAAGaaaaaaaa                                                                                       >  1:3671416/1‑123 (MQ=255)
                                             aattTGAACTTGT‑AAAAAATAGCTTTTTTT‑TTTTTTTTTTTTTTTTTTTTAATTTAAATATAATTTTTATTTTTTTTTTTTTATAATTAT‑ATAAAAAAATA‑AAAATAAAAAAATATTTTAAAAAATat                                                                                            >  2:3715480/1‑127 (MQ=255)
                                             aattTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTATATTGGAAATTTAAATTTTATTTATTTTTTTGTATAATTAT‑ATAAAAAAATA‑TAAATTAAAAAATATTGTTaaatttataaaaaaa                                                                                     >  2:4199366/1‑116 (MQ=255)
                                              attTTAAATTTT‑TAAAAATATT‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTaaa                                                                                     <  1:4373458/128‑1 (MQ=255)
                                                   aaCTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTTTTTTTTTTTAAAATTAT‑ATAAAAAAATA‑AAAATAAAAAAATTATTTTAAATGTTATAATAAAattat                                                                                >  1:7039851/1‑128 (MQ=255)
                                                      ttGT‑AAAAAATAGCT‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTAAAATGGAAATAAAAATTTTTGTTTTTTTTTTTTATAATTAT‑ATAAAAAAATA‑AAAAGAAAAAAATTTTTTTAAAATTAAAAATAAAATTAttt                                                                              >  1:8337132/1‑128 (MQ=255)
                                                      ttGT‑AAAAAATAGC‑‑‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTAAATTGGAAAAATAATTTTTAGGTATTTTTTTGTAAAATTAT‑ATAAAAAAATA‑AAAAAAAAAAAATATTGTTAAAATTAATAAAAAAATTATATAATg                                                                          >  2:2700935/1‑128 (MQ=255)
                                                         t‑AAAAAATATG‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGt                                                                         <  1:5411402/128‑1 (MQ=255)
                                                           aaaaaaTAGC‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTTTTTTGTTTTATAATTAT‑CTAAAAAAATT‑AAAAGTAAAAAATATTTTTAAAATTAAAAATAAAATTATTTAAtttt                                                                        >  2:7924906/1‑128 (MQ=255)
                                                               ttttaaaaatttt‑ttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt                                                                           <  1:4156246/116‑1 (MQ=255)
                                                               ttaaatttttttt‑ttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt                                                                           <  2:5355505/116‑1 (MQ=255)
                                                               ttaaaaatttttt‑ttttttttttttttttttATAATGGAAATATAAATTTTATGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt                                                                           <  2:9830350/116‑1 (MQ=255)
                                                                atataatatttt‑ttttttttttttttttttATAATGGAAATATAAATTTTATGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg                                                                          <  2:2503745/117‑1 (MQ=255)
                                                                    aaattttt‑ttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaa                                                                      <  2:8434002/121‑1 (MQ=255)
                                                                      atattt‑ttttttttttttttttttATTATTGAAATATAAATTTTAGGTATTTTGTTGTATAAGTAT‑ATAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatt                                                                    <  1:298223/123‑1 (MQ=255)
                                                                       ttttt‑ttttttttttttttttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                                   <  1:2059148/124‑1 (MQ=255)
                                                                       ttttt‑ttttttttttttttttttATAATGGAAATATAAATTTTATGTATTTTGTTGTATAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta                                                                   <  2:1851423/124‑1 (MQ=255)
                                                                         ttt‑ttttttttttttttttttATAATGTAAATTTAATTTTTTGTTTTTTTTTTTTAAAATTAA‑ATAAAAAAATA‑TAAAGGAAAAAAATTTTTAAAAATTAAAAAAAAATTTTTTTAATTTTAATaaaa                                                                 >  1:2204622/3‑128 (MQ=255)
                                                                          tt‑ttttttttttttttttttATAATGGAATAAAAAATTTTTGGTTTTTTTTTTTATAATAAT‑CTAAAAAAATT‑AAAATGAAAAAATATTGTTAAAATTATTAATAAAATTTTTTTAT‑ttaatattaaa                                                               >  1:959857/2‑122 (MQ=255)
                                                                             ttttttttttttttttttATAATGTAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACt                                                              <  2:3130626/128‑1 (MQ=255)
                                                                               ttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTta                                                            <  1:1482884/128‑1 (MQ=255)
                                                                                 ttttttttttttttATAATGGAAATATAAATTTAAGGTATTTTTTTTTATAAGTAT‑ATAAAAAAATA‑AAAAGGAAAAAATATTGTTAAAATTAATAATAAATTTATTAAATTTTAATTAAAACTtaat                                                          >  1:3867724/1‑127 (MQ=255)
                                                                                  tttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTAGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaat                                                         <  1:3156944/128‑1 (MQ=255)
                                                                                    tttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTtaaataa                                                       <  1:8857153/128‑1 (MQ=255)
                                                                                        tttttttATAATTGATATATAATTTTTATGTATTTTTTTTTATAAGTAT‑TTAAAAAAATA‑GAAATGAAAAAATATTGTTAAAAGTAATAATAAAATTATTTAATGTTAATTAAAACTTAAATAAAACa                                                   <  1:7654621/128‑1 (MQ=255)
                                                                                        tttttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACa                                                   <  1:555466/128‑1 (MQ=255)
                                                                                          tttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTTAGTAT‑ATAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATa                                                 <  2:7699856/128‑1 (MQ=255)
                                                                                              tataATTTAAATATATATTTTAGGTATTTTGTTGTCTAAGTAT‑ATAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAAt                                             <  2:2376845/128‑1 (MQ=255)
                                                                                                   tGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaata                                        <  2:1192966/128‑1 (MQ=255)
                                                                                                   tGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaata                                        <  2:5869005/128‑1 (MQ=255)
                                                                                                    ggAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaataa                                       <  2:9652966/128‑1 (MQ=255)
                                                                                                     gAAATATAAATTTTATGTATTTTTTTGTATAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                                      <  2:825917/128‑1 (MQ=255)
                                                                                                          ataAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAg                                 >  1:1079795/1‑128 (MQ=255)
                                                                                                              aTTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                             >  2:3969782/1‑128 (MQ=255)
                                                                                                               ttttATGTATTTTGTTGTATAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttat                            <  2:2868773/128‑1 (MQ=255)
                                                                                                               ttttAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACAt                                                  >  2:10478508/1‑106 (MQ=255)
                                                                                                               ttttAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttat                            >  1:8686718/1‑128 (MQ=255)
                                                                                                               ttttAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttat                            >  2:9130573/1‑128 (MQ=255)
                                                                                                                tttATGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                           <  2:6040363/128‑1 (MQ=255)
                                                                                                                  tAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATATTTTATTaa                         >  1:2492406/1‑128 (MQ=255)
                                                                                                                   atgTATTTTGTTGTATAATTAT‑CTAATAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaaa                        <  1:725426/126‑1 (MQ=255)
                                                                                                                    tttATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑TAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAAc                       <  2:5716770/126‑1 (MQ=255)
                                                                                                                    ggTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAAc                       >  2:6500730/1‑128 (MQ=255)
                                                                                                                       aTTTTGTTGTATAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTaa                    <  2:8125190/128‑1 (MQ=255)
                                                                                                                        ttttGTTGTTTAAGTAT‑CTAAAAAAATA‑GAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   <  1:3321158/128‑1 (MQ=255)
                                                                                                                        ttttGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   <  1:10390212/128‑1 (MQ=255)
                                                                                                                        ttttGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt                   >  2:2222238/1‑128 (MQ=255)
                                                                                                                          tttttttttAATTAT‑TTATAAAAATA‑GTAATGAAAATATATTGTTAATATTAATTCTAAAATTATTTAATGTTAATTAAAACTTAAATAATACATAAAATTAATAAAAATATTTTATTAAACTAAttt                 <  1:66272/120‑1 (MQ=255)
                                                                                                                          ttgttgTCTCAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt                 <  1:9074804/128‑1 (MQ=255)
                                                                                                                          ttgttgTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt                 <  2:3318618/128‑1 (MQ=255)
                                                                                                                          ttgttgTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAAAATAAAATTAATAAAAATAGTTTATTAAACTAAttt                 >  1:10000058/1‑128 (MQ=255)
                                                                                                                          ttgttgTATAATTAT‑ATAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt                 <  1:6404242/128‑1 (MQ=255)
                                                                                                                           tgttgtCTAAGTAT‑CTAAAAATATA‑GAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTc                <  2:4964796/128‑1 (MQ=255)
                                                                                                                            gttgtATAAGTAT‑ATAAAAAAATA‑GAAAGTAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCg               <  2:10325869/128‑1 (MQ=255)
                                                                                                                              tgtCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGtt             <  1:9463209/128‑1 (MQ=255)
                                                                                                                                tCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTg           <  1:9768410/128‑1 (MQ=255)
                                                                                                                                 atAAGTAT‑CTAAAAAAATA‑GAAAGTAAAAAATATTGTAAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGa          <  2:4597980/127‑1 (MQ=255)
                                                                                                                                  tAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAt         >  2:1623943/1‑128 (MQ=255)
                                                                                                                                  tAAGTAT‑ATAAAATAATA‑TAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAt         <  1:1715721/128‑1 (MQ=255)
                                                                                                                                   aaGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATATAAATAGTTTATTAAACTAATTTCGTTTGAtt        >  1:7903780/1‑128 (MQ=255)
                                                                                                                                    aGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAttt       >  2:8724258/1‑128 (MQ=255)
                                                                                                                                     gTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGAtttt      >  1:4725323/1‑128 (MQ=255)
                                                                                                                                      tAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGATAATAAAAACTTAAATAAAACATAAAAATAATAAAAATAGTTTAATAAACTAAATTcttattaattat     >  2:935415/1‑117 (MQ=255)
                                                                                                                                          cTAAAAAAATA‑GAAATGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTaaa  <  1:7421818/128‑1 (MQ=255)
                                                                                                                                          cTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTaaa  >  2:1419472/1‑128 (MQ=255)
                                                                                                                                          |                                                                                                                                
TTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGT‑AAAAAATAGC‑‑‑‑‑‑T‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAT‑CTAAAAAAATA‑GAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGATTTTTAAA  >  CP016816/165182‑165438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑