Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8930T.61.0% 262.2 / inf 3546intergenic (‑142/+43)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (724/462);  new base . (1080/774);  total (1812/1734)
Fisher's exact test for biased strand distribution p-value = 1.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.44e-02

Only 100 of 4258 total aligned reads displayed.

AATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76766‑77020
                                                                                                                                   |                                                                                                                                
aaTTTATATATATTATTGTAATTAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAAATCAAAT‑AACATTATATAAAGATAAATTTTTTAAACAAAAATATTACAAC‑‑t                                                                                                                                  <  2:6857914/128‑1 (MQ=255)
aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑t                                                                                                                                  >  1:945678/1‑128 (MQ=255)
        tatatTAGTGAACTTAATGATTTATAAAAAAAATTAATAA‑TAACTGTAAAAACCAAATTCACCTTTAAATTAAAAT‑AAAATTATATAAATATAAATTTTTTAAATAAAAATATTACAAC‑‑t‑tttttttt                                                                                                                         <  2:8039190/128‑1 (MQ=255)
         atatTAGTGAACTTAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑t‑ttttttttt                                                                                                                        >  1:10000149/1‑128 (MQ=255)
          tatTAGTGAACTTAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAATATAAATATTACAAC‑‑t‑tagttttttt                                                                                                                       >  1:5602299/1‑128 (MQ=255)
          tatTAGTGAACTTAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAA‑‑t‑tttttttttt                                                                                                                       >  1:1995455/1‑128 (MQ=255)
          tatTAGTGAACTTAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAAATCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAATAAAAATATTACAAC‑‑t‑tttttttttt                                                                                                                       <  2:3704522/128‑1 (MQ=255)
           atTAGTGAACTTAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑t‑ttttttttttt                                                                                                                      >  2:8753189/1‑128 (MQ=255)
                ttaaCTTAACGATGTATAATACCAATTAATAA‑TAAATTTACAAACCATATTCCCCTTTAAAATCAAAT‑AACATTTAATAAAGATAAATTTTTTAAACAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTTg                                                                                                                 <  2:983289/126‑1 (MQ=255)
                  aaCATAATGATTTATAAAACAAATTAAAAA‑AAACTTTAAAACCCAAATTACCCTTTAAAATCAAAA‑AAAATTATAAAAATATAAATTTTTTAAAGAAAAATATTACAAC‑‑t‑ttttttttttttttggaa                                                                                                               <  2:963581/128‑5 (MQ=255)
                   atctatggaataataataAAAAATAATAATTAAATAT‑CAAACCAAATTCCCATTTAAATTCTAAT‑AAAATTATATTAATTTAAATTTTTTAAAGTAAAATATTAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAAc                                                                                                             <  1:6566802/116‑1 (MQ=255)
                     ttAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑t‑ttttttttttttttttaaata                                                                                                            >  2:4709831/1‑122 (MQ=255)
                     ttAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑t‑tttttttttttttgtaactaa                                                                                                            >  1:4964460/1‑120 (MQ=255)
                     ttAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAA‑‑T‑TTTTTTTTTTTTTTT‑GAACTa                                                                                                           >  1:10397340/1‑128 (MQ=255)
                       aaGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑t‑tttttttttttttttttttaaat                                                                                                          >  2:8221683/1‑120 (MQ=255)
                       aaGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAA‑‑t‑tttttttttttttgtaactaaat                                                                                                          >  2:1984897/1‑118 (MQ=255)
                         tgATTTATAATAAAAATTAATAA‑TAACTGTAAAACCCAAATTTCCCTTTAAATTAAAAT‑AACATTATATAAATATAAATTTTTTAAATAAAAATATTACAAC‑‑‑‑‑TTTTTTTTTTTTTTGGAACTAACata                                                                                                      <  1:1218821/127‑1 (MQ=255)
                            tGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑ATTTTTTATTATAT‑‑AAACTAACATATaa                                                                                                   >  2:2919432/1‑128 (MQ=255)
                             ttataAAAAAAATTAAATA‑AAACAGTAAAACACAAATTCCCATTTAAATTAAAAT‑AACATTAAATAAATCAAAAATTTTTAAATAAAAATAATACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATaa                                                                                                   <  2:7069018/127‑1 (MQ=255)
                             gTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAAGTTTTTAAAGAAAAATATTACCAC‑‑TGTTTTTTTTTTTTTTTGTAAGTAAGatat                                                                                                     >  1:7198506/1‑128 (MQ=255)
                             gTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTACCCTTTAAATTCAAAT‑AACATTAAATAAAGATAAATAATATAAAGAAAAATATTACAAC‑‑T‑TATTTTTTATTTTTTAGAACTAACAtata                                                                                                    >  2:3333397/1‑128 (MQ=255)
                                taataCAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAACT‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAAt                                                                                                  >  1:9091743/1‑128 (MQ=255)
                                taataCAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAAttt                                                                                                >  2:7875359/1‑128 (MQ=255)
                                taataCAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAAATAACATATAAttt                                                                                                >  1:1630047/1‑128 (MQ=255)
                                 tataAAAATTAAATA‑TAAAATTAAAACCCAAATTCCCCTTTAAAATAAAAA‑AAAATTATTTTAATTTAAATTTTTTTAAGTAAAATATTAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAAtttt                                                                                               <  1:1838762/127‑1 (MQ=255)
                                  ataCAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAAtttt                                                                                               >  2:8927684/1‑128 (MQ=255)
                                   taCAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTT‑TAAATAAAATAAAAATTTAc                                                                                             >  2:4292727/1‑128 (MQ=255)
                                   taCAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTATTTTTTTTTT‑TAAATAACATAAAATTTTAc                                                                                             >  1:6179170/1‑128 (MQ=255)
                                      taaTTAATAA‑TAACTGTACAAACCAAATTACCCTTTTAATTTAAAT‑AAAAATATATAAAAATAAATTTTTTAAACAAAAAAATTAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                                          <  1:2605820/127‑1 (MQ=255)
                                      aaaTTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                                          >  2:1272126/1‑128 (MQ=255)
                                      aaaTTAATAA‑TAACTGTACAACCCAAATTACCCTTTAAAATAAAAT‑AAAATTATATAAATATAAAATTTTTAAAGAAAAATATTACAAC‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCaa                                                                                          <  2:1015298/128‑1 (MQ=255)
                                             aaaaaaaaagTACAACCCAAAATCCCCTTTAAATTAAAAT‑TAAATTATAAAAATATAAATTTTTTAAATAAAAAAATTA‑AAA‑‑A‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                                    <  2:570788/119‑1 (MQ=255)
                                              aa‑taaATGTACAACCCAAATTACCCTTAAAATTAAAAT‑AACATTATATAAAGATAAATTTTTTAAATAAAAATATTAAAAC‑‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaa                                                                                 <  1:9791575/128‑1 (MQ=255)
                                                 taaCTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGATAAATATTACAA‑‑‑A‑TTTTTTTTTTTTATTGAAATTAACATTAAATTTTAAAAATTTTTAGaat                                                                                >  1:4229283/1‑128 (MQ=255)
                                                 taaCTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑‑TTTTTTTTTTTTTTGTAAATAACATATAATTTTACCAATTATAAGaatt                                                                               >  2:411905/1‑128 (MQ=255)
                                                  aaCTTTTCAACACAAAATACCCATTAAAATAAAATAAAAATTTTAT‑AACATAAAATTTTTAAAAAAAAAAATTA‑AAA‑‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatt                                                                               <  2:5111566/128‑1 (MQ=255)
                                                  aaCTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAACT‑T‑TTTTTTTTTTTTTTTGGAAATAACAATTTATTTTTCCaataatataaa                                                                                 >  1:4395328/1‑123 (MQ=255)
                                                  aaCTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTTGGAAAAAAAATTAAATTTAACAAATTATTAGaat                                                                                >  2:4519263/1‑128 (MQ=255)
                                                       taaaaacaaaaTTACCATTTAAATTTAAAT‑AAAATTATTTAAATATAAATTTTTTAAATTAAAATATTA‑AAA‑‑A‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                                          <  1:2790269/120‑1 (MQ=255)
                                                       tACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATATTTTTACCAATTATTATaatttcaat                                                                          >  1:856928/1‑128 (MQ=255)
                                                       tACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTAGAAAAAAAATATAATTTAAAAAATTATTAAaattaaaat                                                                          >  2:6653176/1‑123 (MQ=255)
                                                       tACAACCCAAATAACCCATTAAAATAAAAA‑AAAAATATATAAATATTAATTTTTAAAATTAAAATTATACAAC‑‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaa                                                                           <  1:3523296/128‑1 (MQ=255)
                                                          accccAAATTCCTCCATAAAATCAAAA‑AAAAAAATAAAAATAAAATATTATTAAAAAAAAAAAATACAA‑‑‑A‑TAATTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaatttc                                                                       <  1:3362634/126‑1 (MQ=255)
                                                          aaCCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTATaatttaaattta                                                                       >  1:4060737/1‑127 (MQ=255)
                                                             ccATATTTCCCATTAAATTAAAAT‑AAAAATATATAAATATAAAATTTTTTAATAAAAATATTAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTcaca                                                                    <  1:2185589/128‑1 (MQ=255)
                                                              cAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTTTTAACTAAAATATAATTTAAACAATAATTATAATTTAAATTTaaca                                                                    >  2:5907535/1‑128 (MQ=255)
                                                              cAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGTAATAAAATATAATTTTACCAATTATTAGAATTTCAATTTcacta                                                                   >  1:5169809/1‑126 (MQ=255)
                                                              cAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑‑TTTTTTTTTTTTTTGGAAATAAAAATAAATTTAAACAATTATTAAAATTTCAATTTACCAGa                                                                  >  2:9218820/1‑128 (MQ=255)
                                                                   tacaatttaaatttaaaT‑AACATTATATAAATTTAAATTTTTTAAAGAAAAATATTA‑AAA‑‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGaa                                                              <  1:1416705/123‑1 (MQ=255)
                                                                   tCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTATTTTTT‑‑AAATAAAATATAAATTTACCAATTATAATaatttcaatttaaaatattaat                                                             >  2:237530/1‑117 (MQ=255)
                                                                   tCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGATTTTCAATTTCACAGATGaa                                                              >  1:8400799/1‑128 (MQ=255)
                                                                     cccTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGTAAAAAAAATAAAATTTTACCAATTATTAAAATTACAATTAAACAAATAAAtt                                                            >  1:238639/1‑128 (MQ=255)
                                                                     cccTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATAAAATTTTAACAATTATAACAATTACAAAATCAAAGATGAAtt                                                            >  1:9593795/1‑128 (MQ=255)
                                                                         ttATATTAAAAT‑AAAATTATATAATGTTTAATTTTTTTAAATAAAATATTTCAAC‑‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTAAAATTTATTAGAATTTCAATTTCACAGATGATTTGAt                                                         <  1:6779951/128‑1 (MQ=255)
                                                                          tAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAACT‑T‑TTTTTTTTTTTTTTTGGAACTAAAATATAATTTTAAAAAATATTATAATTTAAATTTaactatagatttcat                                                         >  1:7870480/1‑116 (MQ=255)
                                                                           aaaataaaat‑taaattAAATAAATATAAATTTTTTAAATAAAAATAATAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                      <  2:6429622/122‑1 (MQ=255)
                                                                           aaaTTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTTGTAACTAACATATAATTTTAACAATTATTAAAATTTCAATTTCACATATGAATTGAttt                                                       >  2:6088965/1‑128 (MQ=255)
                                                                           aaaTTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTT‑GAAAAAAAATATAATTTTAACAATTAATAAAATTTAAATTTAACATATTAatttatttt                                                      >  2:7704653/1‑127 (MQ=255)
                                                                              ttCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAACTTT‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTTTTAGAATTTAAATTTCACAGATGAATTGATttc                                                      >  1:8021659/1‑128 (MQ=255)
                                                                                  ataaatcATTATTTAAATTTTATTTTTTTAATTAAAATTA‑TATAAA‑‑C‑TTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaa                                                <  1:3188273/122‑1 (MQ=255)
                                                                                   aT‑AAAATTATTAAAATATAAATTTTTTAAATAAAAATAATAAAAA‑‑T‑TTTTTTTTTTTTTTT‑GAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaata                                              <  1:7473131/128‑1 (MQ=255)
                                                                                    attataTTTTATAAATTTAAATTTTTTAAATTAAAATATTAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaata                                              <  1:6371165/123‑1 (MQ=255)
                                                                                    aataaaTTATATAAATAAAAATTTATTAAATAAAAAAATTTAATC‑‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaat                                               <  1:1109655/123‑1 (MQ=255)
                                                                                        cATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTATTTTTTTTTTT‑TAAATAACATATAATTTTAAAAATTATTAAAATTTCAATTTCAAAAATTATTTGATTTATTATAAAAAttt                                          >  2:6273575/1‑128 (MQ=255)
                                                                                        cATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAAAAAAAATATAATTTTACCAATTATTAAATTTTCAATTTAACTAATTAATTTATTTATTATAAAAAttt                                          >  1:3661880/1‑128 (MQ=255)
                                                                                        cATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑‑TTTTTTTTTTTTTTGGAAAAAACATATAATTTTACCAATTATTAAAATTACAATTACACAAATTAATTTATTTATTATAAAAAattt                                         >  1:4576303/1‑127 (MQ=255)
                                                                                         aTTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTT‑GAAATAACAAATAATTTTACAAATTATTATAATTTAAATTTAAAAGATAAATTTATTTATTATAATAATTTg                                         >  2:3894678/1‑128 (MQ=255)
                                                                                            ttataAAGATAAATTTTTTAAATAAAAATATTACAAC‑‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtat                                    <  2:317058/127‑1 (MQ=255)
                                                                                            atataaatataaATTTTTTAAATAAAAATATTATAAC‑‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                                     <  2:10383753/128‑1 (MQ=255)
                                                                                             tataAATAAAAATTTTTTAAATAAAAATATTAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                                     <  1:9241749/128‑1 (MQ=255)
                                                                                             tataAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTTGAAAATAAAAAATAATTTAACAAATTATTTAAATTAAAATTAAAAATATTAATTAATTAATTATAAAAAtttttat                                      >  1:3863567/1‑124 (MQ=255)
                                                                                              ttaAATATAAATTTTTTAAATAAAAATATTAAAAA‑‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                                     <  2:9094618/127‑1 (MQ=255)
                                                                                              attaataTAAATTTTTTAAATAAAAATTTTTAAACT‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                                      <  2:843972/122‑1 (MQ=255)
                                                                                              ataAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTT‑GAAATAACATAAAAATTTAAAAATTATTAGAATTTCAATTTAACAGATGAATTGATTTATTCTAATAAtttttataa                                    >  2:1644048/1‑122 (MQ=255)
                                                                                              ataAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTCCAATATAAATTGATTTCTTCTAATAATTTGTCtat                                    >  1:9954098/1‑128 (MQ=255)
                                                                                                 aatattaaTTTTTTAAATAAAAATAATACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAAGTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtatata                                 <  1:8735122/122‑1 (MQ=255)
                                                                                                   taTAAATTTTTTAAATAAAAATATTACCAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                               <  2:4928515/127‑1 (MQ=255)
                                                                                                    aTAAATTTTTTAAATAAAAATATTA‑AAA‑‑A‑TTTTTTTTTTTTTTTGTATATAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGAt                              <  2:9433549/128‑1 (MQ=255)
                                                                                                    aTAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTTAAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGAt                              >  1:2995262/1‑128 (MQ=255)
                                                                                                       aaTTTTTTAAAGAATAATATTA‑AAA‑‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtt                           <  2:111539/128‑1 (MQ=255)
                                                                                                       aaTTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTAACATATGAATTGATTTCTTCTAATAATTTTTCTATATATAtttt                           >  2:1456019/1‑128 (MQ=255)
                                                                                                         ttttttAAAGAAAAATATTACAAC‑‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTAAATATTGATGtttttt                       >  1:5340464/1‑128 (MQ=255)
                                                                                                         tattaagatataaaaTATTA‑AAA‑‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttt                         <  1:8198959/117‑1 (MQ=255)
                                                                                                           ttttAAATAAAAA‑ATTTAAAA‑‑T‑ATTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTAGAATTTAAATTTCAAAGATGAATTTATTTCTTCTAATAATTTGTCTATATAGATGtttttt                       <  1:5777900/128‑1 (MQ=255)
                                                                                                           ttttAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGTAAAAAAAAAATAATTTTACCAATTATTAAAATTTCAATTTCACATATTAATTTATTTATTATAAAAAATTTTCTTTATATAtttttttt                       >  1:6974996/1‑128 (MQ=255)
                                                                                                            ttttttaattaaTATTTTAAC‑‑A‑CTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt                       <  2:5479724/118‑1 (MQ=255)
                                                                                                            tttAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACAAATTATTAAATTTTAAATTTAAAAGTTGAATTTATTTATTATAATAATTTGTATATATATATTTTTTTta                      >  2:732253/1‑128 (MQ=255)
                                                                                                             ttAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTTGGAACAAAAATATAATTTTACCAATTTTTATAATTTAAATTTCAAAGATTAATTGATTTATTATAATAATTTGTATATATAGTAGTTTTTta                      >  2:2557945/1‑128 (MQ=255)
                                                                                                             ttAAAGAAAAATATTACAAC‑‑‑‑‑TTTATTTTTTTTTTGGAAAAAAAAAAAAATTTTACAAATTATAATATTTTAAATTTCACAGATTAATTGATATCTTCAAATAATTTTTGTATATAGTTTTTTTTtata                    >  2:5280873/1‑128 (MQ=255)
                                                                                                              tAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTtata                    >  1:4769225/1‑128 (MQ=255)
                                                                                                               taataaaaaTATTAAAAA‑‑‑‑‑TTTTTTTTTTTTTTGTAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATc                  <  1:7659635/124‑1 (MQ=255)
                                                                                                                aaGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTAAATTTAAAAGATGAATTGATTTATTATAATAATTTGTCTATATATATGTTTTTTttata                  >  2:7518652/1‑127 (MQ=255)
                                                                                                                   aaaaaTATTA‑AAA‑‑A‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaa               <  2:2765258/128‑1 (MQ=255)
                                                                                                                    aaaaaaTTTAAAA‑‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaa               <  2:1830900/128‑1 (MQ=255)
                                                                                                                    aaaaTATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaaa              <  2:8591938/128‑1 (MQ=255)
                                                                                                                      aataatATAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATc            <  1:10185250/128‑1 (MQ=255)
                                                                                                                      aaTATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATTTTTTTACCAATTTTTATAATTTCAATTTCACAGATGTATTGATTTATTATAATAATTTTTATATATTAATTTTTTTTTTATATAAAta            >  1:5982124/1‑127 (MQ=255)
                                                                                                                      aaTATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTATATATAGATGTTTTTTATATCTAAATc            >  2:3531969/1‑128 (MQ=255)
                                                                                                                          ttACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTg        <  1:8922921/128‑1 (MQ=255)
                                                                                                                                c‑‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATAATATTTTCAATTTCACAGATGAATTGATTTATTATAAAAATTTGTCTATTTATATTTTTTTTATATCTaaaaaaaagatctt   >  2:2190601/1‑117 (MQ=255)
                                                                                                                                   |                                                                                                                                
AATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAA‑TAACTGTACAACCCAAATTCCCCTTTAAATTCAAAT‑AACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑T‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76766‑77020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑