New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 76896 =3953 (0.820)538 (0.120) 161/226 16.0 13.7% intergenic (‑145/+40) JCVSYN2_00300/JCVSYN2_00305 UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
?CP016816 = 76892 3247 (0.750)intergenic (‑141/+44) JCVSYN2_00300/JCVSYN2_00305 UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 4487 total aligned reads displayed.

TTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTTACTT  >  CP016816/76769‑77024
                                                                                                                                  |                                                                                                                                  
   tatatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑ttttttt                                                                                                                                 >  2:9825597/1‑128 (MQ=255)
    atatatTAGTGAACTTAAGGATGTATAAAACAAATTAATAATAACTTTACAACCCAAATTCCCCTTTAAAATCAAATAACATTATATAAATATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑tttttttt                                                                                                                                <  1:2823224/128‑1 (MQ=255)
     tatatTAGTGAACTTAATGATTTATAAAAAAAATTAATAATAACTGTAAAAACCAAATTCACCTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTACAAC‑‑‑ttttttttt                                                                                                                               <  2:8039190/128‑1 (MQ=255)
      atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑tttttttttt                                                                                                                              >  1:10000149/1‑128 (MQ=255)
      atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑tttttttttt                                                                                                                              >  1:4561584/1‑128 (MQ=255)
      atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑tttttttttt                                                                                                                              >  2:2441969/1‑128 (MQ=255)
       tatTAGTGATCTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCACCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAATAAAAATATTACAAC‑‑‑ttttttttttt                                                                                                                             >  1:8775121/1‑128 (MQ=255)
       tatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑ttttttttttt                                                                                                                             >  2:3212950/1‑128 (MQ=255)
         ttAGTTAACTTAAGTATTTATAATACAAATTAATAATAACTGTACAACCCAAATTACCCTTTAAATTCAAATAAAATTTTATAAATATAAATTTTTTAAAGAAAAATATTAAAAC‑‑‑ttttttttttttt                                                                                                                           <  1:4381003/128‑1 (MQ=255)
         ttAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑ttttttttttttt                                                                                                                           >  2:2248965/1‑128 (MQ=255)
            gTGAACGTAAAGATGTATAATACAAATAAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATTAAATTATATAAAGATAAAATTTTTAAAGAAAAATATTACAAC‑‑‑tttttttttttttttg                                                                                                                        <  2:3549963/128‑2 (MQ=255)
                aatttaGGATTTATATAAAAAATAAAAAAAAACTGTACAACCCAAATTACAATTTAAATTAAAATAACATTATATAAATTTAAATTTTTTAAATAAAAATATTAAAAA‑‑‑ttttttttttttttggaact                                                                                                                    <  1:1980803/123‑7 (MQ=255)
                 attAAGGAATTAAAATACAAAATAAAAAAAACAGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAATATAAATTTATTAAATAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACt                                                                                                                  <  2:2049124/127‑1 (MQ=255)
                  ttAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑ttttttttttttttttttaaat                                                                                                                  >  2:7347260/1‑122 (MQ=255)
                  ttAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAA‑‑‑TTTTTTTTTTTTTTTT‑GAACTa                                                                                                                 >  1:10397340/1‑128 (MQ=255)
                  atAACGATGTAAAATACAAATATAAAATAACTTTACCACCCAAATTCCCCTTAAAATTCAAATAACATTTTATAAACAAAAATTTTTTAAATAAAAATAATACAAC‑‑‑‑ATTTTTTTTTTTTTTGGAACTa                                                                                                                 <  2:6858310/127‑1 (MQ=255)
                   tAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑tttttttttttttttgaaaataa                                                                                                                 >  2:3734211/1‑120 (MQ=255)
                    aatttattataATAAAAAATAATAAAAACTTTTAAACCCAAAATACCCTTTTAATTCAAAAAAAATTTTATAAATATAAAATTTTTAAATAAAAATATTAAAAA‑‑‑ATTTTTTTTTTTTTTTGGAACTaa                                                                                                                <  1:6172601/121‑1 (MQ=255)
                    aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑ttttttttttttttttttttaaat                                                                                                                >  2:8221683/1‑120 (MQ=255)
                      tgttttataATAAAAATTAATAATAAATGTAAAAAACAAATTCACATTTAAAATAAAATAACATTATTTAAATATAAATTTTTTAAAAAAAAATATTACAA‑‑‑‑‑‑ATTTTTTTTTTTTTGGAACTAACa‑tat                                                                                                          <  2:7715512/123‑1 (MQ=255)
                      tgATTTATAATAAAAATTAATAATAACTGTAAAACCCAAATTTCCCTTTAAATTAAAATAACATTATATAAATATAAATTTTTTAAATAAAAATATTACAAC‑‑‑‑‑TTTTTTTTTTTTTTGGAACTAACa‑ta                                                                                                           <  1:1218821/127‑1 (MQ=255)
                      ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTATAAAGAAAAATATTACAAC‑‑‑tttttttttttttttgtataaaaaaa                                                                                                              >  2:5487894/1‑117 (MQ=255)
                       gATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTTGaaaaaaaata                                                                                                             >  2:6461096/1‑121 (MQ=255)
                            ataataAAAATTAAAAAAAAATTTACAACCCAAAATCCCCTTTAAATTAAAAAAACATTATTTAAATATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAAtt                                                                                                      <  2:3349586/128‑1 (MQ=255)
                             taataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGATATAACA‑TATAAttt                                                                                                     >  1:7482539/1‑128 (MQ=255)
                             taataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAAATAACA‑TATAAttt                                                                                                     >  1:1630047/1‑128 (MQ=255)
                               ataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTTGGAACTAACA‑TATAAtttt                                                                                                    >  2:8927684/1‑128 (MQ=255)
                                taCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGTAAAAAAAA‑TATATTTTTAc                                                                                                  >  1:8470401/1‑128 (MQ=255)
                                taCAAATAAATAATAACTGTACAACCCAAATTACCCTTTAAATTCAAATAACATTATAAAAATAAAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTAc                                                                                                  <  2:7524186/128‑1 (MQ=255)
                                  cAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAAATAAAA‑AAAAATTTAAcaa                                                                                                >  2:2790269/1‑126 (MQ=255)
                                  aaaaaTAAAAAAAAATTTAAAACCCAAATTACCCATTAAAATAAAATAAAATTAAATAAATTTAAATTTTTTAAATAAAAAAATTAAAA‑‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCaa                                                                                               <  2:874561/127‑1 (MQ=255)
                                   aaaTTAAAAATAAATGTACCACCCAAAATTCCCTTTTAATTCAAATAAAAATTTATAAATTTTAATTTTTTAAATAAAAATATTAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCaa                                                                                               <  1:9659084/128‑1 (MQ=255)
                                         ataataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGTAAATAACA‑AAAAATTTTACCAA‑ttatta                                                                                        >  1:1833108/1‑128 (MQ=255)
                                         ataaaaaCTGTACAACCCAAATTCCCCTTTTAATTCAAATTAAATTATATTAAGATAAATTTTTTAAATAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑ttatta                                                                                        <  2:10221830/128‑1 (MQ=255)
                                         aaaaaaaatttACAACACAAATTACACTTTAAATTAAAATAAAATTATATAAATTTAAATTTTTTAAATAAAAATATTAAAAC‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑ttatta                                                                                        <  1:3669154/118‑1 (MQ=255)
                                           aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAAAA‑TTTAAATTTACCAT‑TTATTAGa                                                                                      >  1:4762976/1‑128 (MQ=255)
                                             taaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTT‑AAAAAAAAA‑TAATATTTTAAAAA‑ttattaatat                                                                                    >  1:2393419/1‑124 (MQ=255)
                                              aaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTTTGAAATAACA‑TATAATTTTAACAA‑TTATTAAaat                                                                                    >  2:4746969/1‑128 (MQ=255)
                                              aaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑‑TTTTTTTTTTTTTTGTAAAAAAAA‑TATAATTTAAAAAa‑taattataatta                                                                                  >  1:8241920/1‑127 (MQ=255)
                                               aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTTTGAAATAAAA‑TAAAATTTTAAAAA‑ttattatattt                                                                                   >  2:9640737/1‑123 (MQ=255)
                                                  tttaaaCCAAAAATACCCTTTAAATTAAAAAAAAAATATATAAATTTAAATTTTTTAAATAAAAAAATT‑TAAA‑‑‑ATTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGaatttcaa                                                                               <  1:9831067/124‑1 (MQ=255)
                                                   tACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTT‑TAACTAAAA‑TATAATTTTACAAA‑ATATTATaatttcaat                                                                              >  2:1687882/1‑128 (MQ=255)
                                                   tACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTAGAAAAAAAA‑TATAATTTAAAAAA‑TTATTAAaattaaaat                                                                              >  2:6653176/1‑123 (MQ=255)
                                                   tACAACCCAAATAACCCATTAAAATAAAAAAAAAATATATAAATATTAATTTTTAAAATTAAAATTATACAAC‑‑‑TTTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGaatttcaa                                                                               <  1:3523296/128‑1 (MQ=255)
                                                    aCAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTT‑GAAAAAACA‑TTAAAATTTACAAATTTATta‑aatttaaatt                                                                             >  1:89669/1‑128 (MQ=255)
                                                     cAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑‑TTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGaatttcaatttc                                                                           >  2:5917994/1‑128 (MQ=255)
                                                      accccAAATTCCTCCATAAAATCAAAAAAAAAAATAAAAATAAAATATTATTAAAAAAAAAAAATACAA‑‑‑‑ATAATTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGaatttcaatttc                                                                           <  1:3362634/126‑1 (MQ=255)
                                                      aacaaaaaTTTCCCTTTAATTTTAAATAAAATTATATAATTTTAAATTTTTTTAAGAAAAATTTTATAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TATTTAGaatttcaatttc                                                                           <  1:4950455/123‑1 (MQ=255)
                                                      aaacaaaaTTACCAATTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGaatttcaatttc                                                                           <  1:7238157/123‑1 (MQ=255)
                                                       aCCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTT‑‑GAACAAACATTAAAATTTAACCAA‑TATTTGAaattacaattcac                                                                          >  2:8578452/1‑125 (MQ=255)
                                                         ccAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAAAAAACA‑TATAATTTAACCAA‑ATATTAAAATTAAAATTTaaca                                                                        >  1:4037047/1‑128 (MQ=255)
                                                         caaaaTTCCCTTTTAAATTAAAATAAATTTATTTAAATAAAAATTTTTTAAATAAAATAATTAAAA‑‑‑‑‑‑TTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGa                                                                      <  2:7069349/126‑1 (MQ=255)
                                                           aaattacaatttAAATTCAAATAAAATTATATAAATATAAATTTTTTTAATAAAAATATTAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGa                                                                      <  2:4974419/119‑1 (MQ=255)
                                                           aaaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGTAAATAACA‑AATAATTTAACCAA‑TAATTATaattaaaatttccaata                                                                      >  2:1873487/1‑123 (MQ=255)
                                                           aaaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGa                                                                      <  2:5122689/128‑1 (MQ=255)
                                                            tttatcagtttAAATTCAAATAACAATTTATAAATTTAAATTTTTTAATAAAAAATATTATAAA‑‑‑TTTTTATTTTTTTTTAGGAACTAACA‑TATAATTTTACCAT‑TTATTAGAATTTCAATTTCACAGa                                                                      <  1:5756037/120‑1 (MQ=255)
                                                            aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTTTTAAATAACA‑TATAATTTTAAAAA‑ATATTAAAATTTAAATTTAAAAGa                                                                      >  2:6107859/1‑128 (MQ=255)
                                                              ttCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGTAAAAAAAA‑TAAAATTTTACAAA‑TATTTAAAAATTAAATTTcacataaga                                                                   >  1:7888420/1‑123 (MQ=255)
                                                                   atttAAAATAAAAAAAAATTTTATAAATATAAAATTTTTAAATAAAATAATTACAACTTTTTTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGaa                                                                  <  1:2180500/127‑1 (MQ=255)
                                                                    tttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAACT‑‑TTTTTTTTTTTTTTTTGTAACTAAAA‑TATAATTTTAACAA‑ATATTAGAATTAAAATTTCAAATATAAAttt                                                               >  1:6785378/1‑127 (MQ=255)
                                                                    attaaattaaaATAAAATTATATAAATATAAATTTTTTAAATAAAAAAATTAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGAt                                                             <  2:10427177/127‑1 (MQ=255)
                                                                     ttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAATAAAAATATTA‑AAA‑‑‑ATTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGAtt                                                            <  1:8620014/128‑1 (MQ=255)
                                                                      tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTAAATTTAACAGATGAATTGAtat                                                           >  2:9429669/1‑126 (MQ=255)
                                                                       aatataaaaTAAAATTAATTAAATAAAAATTTTTAAAATAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGTTGAATTGATttc                                                          <  2:5723410/122‑1 (MQ=255)
                                                                       aaatttctaTAAAAATATTTAAATATAAATTTTTTAAATAAAAATAATA‑AAA‑‑‑ATTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                          <  1:4227252/120‑1 (MQ=255)
                                                                       aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAAATAACA‑TATAATTTTACCAA‑TATTTATAATTAAAATTAAAAAGATCAATTAAttta                                                          >  1:5986847/1‑127 (MQ=255)
                                                                       aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑‑TTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATttct                                                         >  2:4545202/1‑128 (MQ=255)
                                                                       aaaTTAAAATATAATTATATAAATATAAATTTTTTAAATAAAAATATTA‑AAA‑‑‑TTTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                          <  1:2615691/128‑1 (MQ=255)
                                                                       aaaTTAAAATAAAATTATAAAAATATAATTTTTTTAAAAAAAAATATTAAAA‑‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATttct                                                         <  2:10000149/128‑1 (MQ=255)
                                                                        aaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTT‑‑AAAAAAAAA‑AAAAATTTTACAAA‑TATTTATAATTACATTTTAACATATAAAttttttatta                                                        >  1:3018307/1‑120 (MQ=255)
                                                                        aaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑‑‑TTTTTTTTTTTTTGGAAATAAAA‑TATAATTTTACCAA‑TTATTATAATTTAAATTTCACAGATGAAATTATttattc                                                       >  1:5572818/1‑128 (MQ=255)
                                                                          ttCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGTAACAAACA‑TAAAATTTTACCAA‑TTATTAGAATTTCAATTAAACAGATTAAttttattctta                                                       >  1:9301499/1‑119 (MQ=255)
                                                                            cAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGTACCTAACA‑TATATTTTTACCAA‑TTATTAGCATTTAAAATTAACAGATGAATTTAttaattaaa                                                     >  1:3184996/1‑121 (MQ=255)
                                                                            aaaaaaaaaatataaaAATTTAAATTTTTTAAATAAAAATTATACAA‑‑‑‑AATTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCta                                                     <  1:6588479/118‑1 (MQ=255)
                                                                              atttagattttttaAAGTTTAATTTTTTATAGAAAAATATTACTA‑‑‑‑TTTTTTTTTTTTTTTTGTAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaat                                                   <  2:6279260/116‑1 (MQ=255)
                                                                               attataTTTTATAAATTTAAATTTTTTAAATTAAAATATTAAAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaata                                                  <  1:6371165/123‑1 (MQ=255)
                                                                               aataaaTTATATAAATAAAAATTTATTAAATAAAAAAATTTAATC‑‑‑TTTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaat                                                   <  1:1109655/123‑1 (MQ=255)
                                                                                       atataAATTTAAATTTTTTTAAGAAAAATATTA‑AAA‑‑‑ATTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                                          <  1:1417209/128‑1 (MQ=255)
                                                                                        tataAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTTGAAAATAAAA‑AATAATTTAACAAA‑TTATTTAAATTAAAATTAAAAATATTAATTAATTAATTATAAAAAtttttat                                          >  1:3863567/1‑124 (MQ=255)
                                                                                        tataAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAAATAAAA‑TATAATTTTACAAA‑TTTTTATAATTTAAATTTAAAAAATGAATTTATTAATTATAATAAtttttata                                         >  2:1153104/1‑123 (MQ=255)
                                                                                         ttaAATATAAATTTTTTAAATAAAAATATTAAAAA‑‑‑TTTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                                         <  2:9094618/127‑1 (MQ=255)
                                                                                               tttatatttttAAAGATAATTTTTA‑ATA‑‑‑TTTTTTTTTTTTTTTTGTTAATAACT‑TATAATTTTACGTT‑TTTTTAGAATTTAAATTTAACATATGAATTGATTTCTTCTAATAATTTGTCTATATAGAt                                  <  1:5308528/122‑1 (MQ=255)
                                                                                                aaaaaTTTTTAAATAAAAATATTTCAA‑‑‑‑ATTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg                                 <  2:5307366/127‑1 (MQ=255)
                                                                                                   aTTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTT‑GAAAAAACA‑TATATTTTTACAAT‑TTATTATAATTTAAATTTCACAGATTAATTGATTACTAATAATAATTTTtatatatataatttt                              >  1:77195/1‑121 (MQ=255)
                                                                                                    ttttttAAATTAAAATATTAAAAA‑‑‑TTTTTTTTTTTTTTTT‑GAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttt                             <  2:392729/128‑1 (MQ=255)
                                                                                                      ttttAAATAAAAATATTAAAAC‑‑‑TTTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGttttt                            <  2:8401807/128‑1 (MQ=255)
                                                                                                        ttAAATAAAAATATTAAAAC‑‑‑TTTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTta                          <  2:4330218/128‑1 (MQ=255)
                                                                                                           aattaaatttttAAAAA‑‑‑TTTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTatat                       <  1:8024892/118‑1 (MQ=255)
                                                                                                           aaGTAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCTCAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATc                      <  2:7880003/128‑1 (MQ=255)
                                                                                                             gAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTATAATTTAATTTTCACAGATGAATTGATTTCTTATTATTATTTGTATATATATATGTTTTTTATATCTa                    >  2:4155523/1‑128 (MQ=255)
                                                                                                              aaaaaTATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TAAAATTTTACCAT‑TTATTATAATTAAAATTTAAAAGATTATTTTATTTATTTTAATATTTTGTATATATATATTTTTTTTTTATATaa                   >  2:1317884/1‑128 (MQ=255)
                                                                                                              aaaaaTATTACAAC‑‑‑‑TTTTTTTTTTTTATTGGATCTAAAA‑AATAATTTTACAAA‑TAATTTTATTTACATTTTCACATATTAATTAATTTAATGTAAATATATGTATATAAAGATTTTTTTTatataaaa                   >  2:2981592/1‑124 (MQ=255)
                                                                                                               aaaaTATTATAAC‑‑‑‑TTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaaa                  <  1:9116232/128‑1 (MQ=255)
                                                                                                               aaaaTATTACAAC‑‑‑‑TTTTTTTTTTTTTTTGGAAAAAACA‑TATAATTTTACAAA‑TTATTATAATTTAAATTTAACAGATTAATTAAATTCTTCTAATAATTTTTAAAAATAAATTATTTTTATATCTaaa                  >  2:1509216/1‑128 (MQ=255)
                                                                                                                 aaTATTACAAC‑‑‑‑TTTTTTTTTTTTTTTATAAAAAACA‑AAAAATTTTACAAA‑TAATTATAATTTCAATTAAACAGATTAAATAATTAATTATAATAATTTTTATATATAAATTTTTTTtattaataaata                >  1:51436/1‑119 (MQ=255)
                                                                                                                      attatacaaatttttttttttttttGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCa               <  1:10194730/118‑1 (MQ=255)
                                                                                                                        cAAC‑‑‑TTTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGAt          <  1:9479696/128‑1 (MQ=255)
                                                                                                                        atttaaaatttttttttttttttGGAACTAAAA‑TATAATTTTAACAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGt             <  1:6995114/120‑1 (MQ=255)
                                                                                                                                tttttttttttttttGGAACTAACA‑TATAATTTTACCAA‑TTATTATAATTTCAATTTCAAAGATTAATTTATTTCTTCTAATAATTTTTCTATATAGATGTTTTTTATATATAAATCAGTTATcttta     >  2:2594345/1‑128 (MQ=255)
                                                                                                                                tttttttttttttttGAAACAAAAA‑TATAATTTTACCAA‑TTATTTGAATTTCAATTTAACAGATGAATTTATTTATTATAATAATTTTTATATATATATTTTTTTTATTTATAAATAAGttaaattga     >  2:9221069/1‑120 (MQ=255)
                                                                                                                                  |                                                                                                                                  
TTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTTTGGAACTAACA‑TATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTTACTT  >  CP016816/76769‑77024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.