BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP016816	420,163	2 bp→TT	intergenic (‑446/+396)	JCVSYN2_01895 ← / ← JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,163	0	A	T	99.3%	3157.0 / NA	1040	intergenic (‑446/+397)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (2/5); new base T (550/481); total (552/488)
Fisher's exact test for biased strand distribution p-value = 2.62e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP016816	420,164	0	A	T	98.3%	2755.5 / NA	1028	intergenic (‑447/+396)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (4/13); new base T (540/470); total (544/484)
Fisher's exact test for biased strand distribution p-value = 2.45e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1041 total aligned reads displayed.

CATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTAAAATTAAAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATT  >  CP016816/420041‑420285

||

gattcatACTTTTAGTCTGATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATa                                                                                                                            <  2:1800069/127‑1 (MQ=255)

aattaatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATa                                                                                                                            <  2:1556811/127‑1 (MQ=255)

 attcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTtaataa                                                                                                                           >  1:1300773/1‑128 (MQ=255)

  ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAAc                                                                                                                          >  1:2375843/1‑128 (MQ=255)

  ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAAc                                                                                                                          >  1:1858325/1‑128 (MQ=255)

  atcatACATATACTCTCATAAATCTAAGTTTCTAAAATTAATTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAAc                                                                                                                          <  1:599588/127‑1 (MQ=255)

   tcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACt                                                                                                                         >  1:106076/1‑128 (MQ=255)

   tcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACt                                                                                                                         >  1:2299584/1‑128 (MQ=255)

     atACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑a                                                                                                                      <  1:1380120/128‑1 (MQ=255)

       aCTTTTATTCTCTTAAATCTAAGTTTCTAATATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑Aat                                                                                                                    <  1:817907/128‑1 (MQ=255)

       aCTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTATAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑Aat                                                                                                                    >  1:1342844/1‑128 (MQ=255)

        cTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑Aatt                                                                                                                   <  1:465509/128‑1 (MQ=255)

        cTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑Aatt                                                                                                                   <  2:130267/128‑1 (MQ=255)

        cTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑Aatt                                                                                                                   <  2:560524/128‑1 (MQ=255)

         ttttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑Aatta                                                                                                                  <  1:99090/128‑1 (MQ=255)

           ttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑Aattatt                                                                                                                >  1:277125/1‑128 (MQ=255)

           ttAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑Aattatt                                                                                                                <  1:93177/128‑1 (MQ=255)

            tAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTAttt                                                                                                               <  1:1683356/128‑1 (MQ=255)

             aGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTAtttt                                                                                                              <  2:487743/128‑1 (MQ=255)

             aGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTAtttt                                                                                                              <  1:491873/128‑1 (MQ=255)

                ctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTATCACGTTTTTAAAAAA‑ATTTTAATTTTAATAAATG‑AATTATTTTTCa                                                                                                           >  1:68741/1‑128 (MQ=255)

                 tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCaa                                                                                                          <  2:1705999/128‑1 (MQ=255)

                 tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCaa                                                                                                          <  2:339010/128‑1 (MQ=255)

                 tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCaa                                                                                                          <  2:836605/128‑1 (MQ=255)

                   aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAAt                                                                                                        <  2:1376844/128‑1 (MQ=255)

                   aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATAAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAAt                                                                                                        >  2:1040761/1‑128 (MQ=255)

                   aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATAC‑TTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATATTAATAACTG‑AATTATTTTTCAAAtt                                                                                                       >  1:631542/1‑128 (MQ=255)

                    tAAATCTAAGTTTCTAAAATTATTTTATAATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAAtt                                                                                                       <  2:2455102/128‑1 (MQ=255)

                     aaaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATAAGTTGATATATTAGAAAACTACTATCACTTTTTTAAAAAA‑TTTTAAATTTTAATAACTG‑AATTATTTTTCAAATTg                                                                                                      >  1:1827570/1‑128 (MQ=255)

                       aTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGtt                                                                                                    >  2:2147103/1‑128 (MQ=255)

                        tCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTTTTa                                                                                                   >  1:1000261/1‑128 (MQ=255)

                          tAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTaaa                                                                                                 <  1:1203818/128‑1 (MQ=255)

                           aaGTTTCATAAATTATTTTATCATTTAAAAAAATAATAGTTTTATTAGTTGATATATTATAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAat                                                                                                <  2:1646657/128‑1 (MQ=255)

                              tttCTAAAAATATTTTATCAATTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATATTAATAACTG‑AATTATTTTTCAAATTGTTAAattat                                                                                             <  1:1549540/128‑1 (MQ=255)

                               ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAattatt                                                                                            >  2:151903/1‑128 (MQ=255)

                                tCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTAttt                                                                                           <  1:2156573/128‑1 (MQ=255)

                                tCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTAttt                                                                                           >  2:645301/1‑128 (MQ=255)

                                tCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑ATTTTAATTTTAATAAATT‑AATTATTTTTAAAATTGGTAAATTAttt                                                                                           >  2:1186432/1‑128 (MQ=255)

                                 cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTAtttt                                                                                          >  2:203193/1‑128 (MQ=255)

                                 cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTAtttt                                                                                          >  1:1039759/1‑128 (MQ=255)

                                 cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTAtttt                                                                                          <  1:2199670/128‑1 (MQ=255)

                                  tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTc                                                                                         >  2:1878561/1‑128 (MQ=255)

                                  tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTc                                                                                         <  2:75336/128‑1 (MQ=255)

                                  tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTc                                                                                         <  2:387568/128‑1 (MQ=255)

                                   aaaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCa                                                                                        >  1:901030/1‑128 (MQ=255)

                                    aaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCaa                                                                                       <  2:2413998/128‑1 (MQ=255)

                                     aaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAATCTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCaaa                                                                                      >  2:1454630/1‑128 (MQ=255)

                                     aaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCaaa                                                                                      >  2:2353174/1‑128 (MQ=255)

                                         attTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCAt                                                                                  >  2:261401/1‑128 (MQ=255)

                                            ttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                               >  1:849872/1‑128 (MQ=255)

                                               ttaaatgataaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTa                                                                            >  1:1517442/10‑128 (MQ=255)

                                               tCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTT‑AATTATTTTTCAAATTGTTAAATTATTTTCACTACATTATCTa                                                                            >  2:2380929/1‑128 (MQ=255)

                                                  tttAATAAAATTATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTATTAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTa                                                                         <  2:2300992/128‑1 (MQ=255)

                                                  tttAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTa                                                                         >  1:2006318/1‑128 (MQ=255)

                                                   ttAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCtaataa                                                                        >  1:754579/1‑128 (MQ=255)

                                                      aaaaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCa                                                                     >  1:1895930/1‑128 (MQ=255)

                                                       aaaaaTAATACTTTTAATAGTTGATATATTATAAAAATAATAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAAATG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCaa                                                                    <  1:1771329/128‑1 (MQ=255)

                                                        aaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAt                                                                   >  2:2209939/1‑128 (MQ=255)

                                                          aataataatTTTATTAGTTTATATATTAGAAAACTACTAGCAATTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAttt                                                                 <  2:2247584/128‑1 (MQ=255)

                                                          aataatACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAttt                                                                 <  1:1246989/128‑1 (MQ=255)

                                                           ataataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAtttt                                                                <  2:1991718/128‑1 (MQ=255)

                                                           ataataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAtttt                                                                >  1:256222/1‑128 (MQ=255)

                                                           ataataCTTTTATTAGTTGATATATTAGAAAAATACTAGCACTTTTTTAAAATA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAtttt                                                                <  1:1655648/128‑1 (MQ=255)

                                                             aataCTTTTATTAGTTGATATATTATAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAt                                                              <  1:65757/128‑1 (MQ=255)

                                                              ataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAta                                                             >  2:2094211/1‑127 (MQ=255)

                                                                aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑ggt                                                         >  1:2334204/1‑126 (MQ=255)

                                                                aCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAAATG‑AATTATTTTTAAAATTTTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCt                                                         >  2:914084/1‑128 (MQ=255)

                                                                  ttttATTAGTTGATATATTAGAAAACTACTAACACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GATCg                                                       >  1:788307/1‑128 (MQ=255)

                                                                   tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑TCTCG‑t                                                     >  1:1715582/1‑128 (MQ=255)

                                                                   tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑t                                                     >  1:1968270/1‑128 (MQ=255)

                                                                   tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑t                                                     >  1:1110698/1‑128 (MQ=255)

                                                                    ttattaTTTTATATATTAGAAAAATAATAGCAATTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCAATATCAATTAAACAATTTTAT‑‑GCTCG‑tt                                                    <  1:365639/128‑1 (MQ=255)

                                                                     tattaGTTGATATATTATTAAAATATTAGCAATTTTTTAAAAAA‑TTTTTTATTTTAATAACTT‑AATTATTTTTCAAATTTTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑ttt                                                   <  1:1153282/128‑1 (MQ=255)

                                                                     tattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑TCTCG‑ttt                                                   >  2:528014/1‑128 (MQ=255)

                                                                           ttGATATATTTGAAAACTATTAGCAATTTTTTAAAAAA‑TTTTTAAATTTAATAACTGAAATTATTTTT‑AAATTTTTAAATTATTTTCAAATCATTATCTATTAATAAATTTTAT‑‑TCTCG‑ttttttttt                                             <  2:285312/128‑1 (MQ=255)

                                                                                    tAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑tttttttttttttttttt                                    >  1:402772/1‑127 (MQ=255)

                                                                                        aaaCTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑TTTTTTTTTTTTTTTTa‑aaaaa                               >  1:726539/1‑128 (MQ=255)

                                                                                         aataaattctctttttttAATATT‑TTTTAAATT‑TAATTATTG‑AATTATTTTTCAAATTTTTAAATTATTATCAAATCATTATTTATAAATAAAATTTAT‑‑GCTCG‑TTTTTTTTTTTTTTTTT‑ACaaaaa                             <  1:2253451/116‑1 (MQ=255)

                                                                                         aaataataGCTCTTTTTTAAAAAA‑TTTTTAATTTTAATAAATT‑TATTTTTTTTAAAATTTTTAAATTATTTTCAAATAATTATATATTAATAAATTTTAT‑‑GCTCT‑TTTTTTTTTTTTTTTTT‑ACaaaa                              <  2:1125260/122‑1 (MQ=255)

                                                                                         aaCTACTAGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑tttttttttttttttttttttaa                               >  2:2181444/1‑122 (MQ=255)

                                                                                           ctagtaTCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑tttttttttttttacaaaaatataa                             <  2:598277/128‑13 (MQ=255)

                                                                                           ctactaGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTT‑ATTTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑tttttttttttttttaaaaaaataa                             >  2:2053628/1‑118 (MQ=255)

                                                                                           ctactaGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑‑TTTTTTTTTTTTTTTT‑ACAAAAata                           >  2:1218034/1‑128 (MQ=255)

                                                                                             aaataaaatttttaAAAAAA‑TTTTTAATTTAAATAATTT‑ATTTTTTTTTAAAATTTTTAAATT‑TTTTAAAAAAATTTTTTATTAATAAATTTTTT‑‑TTTTG‑‑TTTTTTTTTTTTTTTT‑AAAAAAATATaa                        <  2:942614/120‑1 (MQ=255)

                                                                                               tatcaattttttAAAAAA‑TTTTTAATTTTAATAAATT‑AATTATTTTTAAAATTTTTAAATTATTTTAAAAAAATTATTTATTAATAAATTTTAT‑‑GCTCG‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAat                       <  1:1586802/122‑1 (MQ=255)

                                                                                               tatcaattttttAAAAAA‑TTTTTAATTTTAAAAAATT‑AATTATTTTTAAAATTGTTAAATTATTTTAAAATCATTAAATATTAATCAATTTTAT‑‑TCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATaa                        <  1:209913/122‑1 (MQ=255)

                                                                                               tatcACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTT‑AATTATTTTTAAAATTTTTAAATTAATTTAAAATCATTTTATATTAATAAATTTTAT‑‑TCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATaa                        <  1:2038621/125‑1 (MQ=255)

                                                                                               taccaattttttTAAAAA‑TTTTTAATTTTAAAAAATT‑TATTATTTTTAAAATTTTTAAAATATTTTAAAAAAAATATATATTAATCAAATTTTT‑‑TCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATaa                        <  2:693819/122‑1 (MQ=255)

                                                                                                ataaattttttAAAAAA‑TTTTTAATTTTAATAAATG‑TATTATTTTTCAAAATTTTTAATTATTTTCAAATCATTATAAATTAATAAATTTTAT‑‑GCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAat                       <  2:1967618/123‑1 (MQ=255)

                                                                                                aGCACTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑TTTTTTTTTTTTTTTTT‑AAAaaaataaaat                       >  2:1851107/1‑128 (MQ=255)

                                                                                                 taaattttttAAAAAATTTTTAATTTTAAATAA‑TT‑AATTTTTTTTTAAATTTTTAAATTTTTTTTAAATAATTATATATTATTAATTTTTTTTATCTTT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATaa                        <  1:1462396/124‑1 (MQ=255)

                                                                                                  cACTATTTTAAAAAA‑ATTTTAATTTTAATAACTG‑AATTATTTTTCAAATTCTTAAAATATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑TCTCG‑‑TTTTTTATTTTTTTTT‑ACAAAAATAAAattta                    >  1:1941849/1‑128 (MQ=255)

                                                                                                    cTTTTTTAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAAAAAAatttat                   >  1:53740/1‑128 (MQ=255)

                                                                                                     ttttttAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCT‑TTTTTTTTTTTTTTTTT‑AAAAAAAAATAatttatt                  >  1:1436139/1‑128 (MQ=255)

                                                                                                      tttttAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑TCTCG‑TTTTTTTTTTTTTTTTTAACAAAAATAAAttttatt                  >  2:1244519/1‑128 (MQ=255)

                                                                                                      tttttAAAAAA‑TTTTTAATTTTAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAatttattt                 >  1:2077360/1‑128 (MQ=255)

                                                                                                       ttttAAAAAA‑TTTTTAATTTTAAAAAATT‑AATTATTTTTAAAATTTTTAAATTATTTTAAAATCATTATCTATTAATCAATTTTAT‑‑TCTCGTTTTTTTTTTTTTTTTTT‑ACAAAAATATAatttattt                 <  1:243054/128‑1 (MQ=255)

                                                                                                           aaaata‑TTTTTAATTTTAATAAATT‑AATTATTTTTTAAATTTTTTAATTATTTTAAAATAATTATATATTAATAAATTTTAT‑‑TTTAT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTa            <  1:328835/128‑1 (MQ=255)

                                                                                                             aaat‑TTTTAAATTT‑AATAATTT‑AATTATTTTTTAATTTTTTAAATTTTTTTTAATTCATTATATATTTATAAATTTTAT‑‑GCTGGTTTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTaaa          <  2:1940428/128‑1 (MQ=255)

                                                                                                                     ttaatttatatAATTT‑AATTTTTTTTATATTTTTTAATTTTTTTTAAAATAATTTTATATTTATAAATTTTAT‑‑‑TTTA‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATAtt  <  1:960324/126‑1 (MQ=255)

||

CATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAA‑TTTAAAATTAAAATAACTG‑AATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAT‑‑GCTCG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATT  >  CP016816/420041‑420285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`