BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP016816	420,157	2 bp→TT	intergenic (‑440/+402)	JCVSYN2_01895 ← / ← JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,157	0	A	T	99.6%	3195.7 / NA	1039	intergenic (‑440/+403)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (2/2); new base T (549/483); total (552/487)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP016816	420,158	0	A	T	98.8%	2997.1 / NA	1040	intergenic (‑441/+402)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base A (4/9); new base T (548/479); total (552/488)
Fisher's exact test for biased strand distribution p-value = 1.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1079 total aligned reads displayed.

TAAATTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTACAAAAATATA‑ATTTATTTGATTAAACGTAT  >  CP016816/420035‑420282

||

 aaattCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATttttaattt                                                                                                                           >  2:2038621/1‑127 (MQ=255)

  aattCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATttttaatttt                                                                                                                          <  1:280885/128‑3 (MQ=255)

   attcattcATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATttttaatttta                                                                                                                         >  2:826428/1‑125 (MQ=255)

      cattcatACTTATAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATa                                                                                                                      <  1:699440/128‑1 (MQ=255)

      cattaatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATATTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATa                                                                                                                      <  1:1829169/128‑1 (MQ=255)

       attcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTtaataa                                                                                                                     >  1:2309277/1‑128 (MQ=255)

       attcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTtaataa                                                                                                                     >  2:2156573/1‑128 (MQ=255)

        ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                    <  1:2104675/128‑1 (MQ=255)

        ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                    >  2:166650/1‑128 (MQ=255)

        ttcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                    >  1:1858325/1‑128 (MQ=255)

        atcatACATATACTCTCATAAATCTAAGTTTCTAAAATTAATTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAAc                                                                                                                    <  1:599588/127‑1 (MQ=255)

         tcatACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACt                                                                                                                   <  1:1972339/128‑1 (MQ=255)

           atACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGa                                                                                                                 <  1:1380120/128‑1 (MQ=255)

           atACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGa                                                                                                                 <  1:164515/128‑1 (MQ=255)

            tACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGaa                                                                                                                >  2:1976435/1‑128 (MQ=255)

              cTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAatt                                                                                                              <  1:465509/128‑1 (MQ=255)

              cTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAatt                                                                                                              <  2:70570/128‑1 (MQ=255)

                  tAGTCTCATATATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTAttt                                                                                                          <  2:1080760/128‑1 (MQ=255)

                  tAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTAttt                                                                                                          <  1:1683356/128‑1 (MQ=255)

                  tAGGCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAATAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTAttt                                                                                                          <  2:2264850/128‑1 (MQ=255)

                    gTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTAttttt                                                                                                        <  2:1581756/128‑1 (MQ=255)

                      ctcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTATTTTTATTAACTGAATTATTTTTCa                                                                                                      >  2:505844/1‑128 (MQ=255)

                       tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                     <  2:912907/128‑1 (MQ=255)

                       tcATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaa                                                                                                     >  2:1860093/1‑128 (MQ=255)

                        cATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCaaa                                                                                                    <  1:1239502/128‑1 (MQ=255)

                         aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                   <  1:82167/128‑1 (MQ=255)

                         aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAt                                                                                                   >  2:657483/1‑128 (MQ=255)

                         aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGAACTTTTTTAAAAAATTTTTAATTTTAATAACTTAATTATATTTCAAAt                                                                                                   >  2:1311166/1‑128 (MQ=255)

                         aTAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATAC‑TTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATATTAATAACTGAATTATTTTTCAAAtt                                                                                                  >  1:631542/1‑128 (MQ=255)

                          tAAATCTAAGTATCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAAtt                                                                                                  <  2:2064151/128‑1 (MQ=255)

                           aaaTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTg                                                                                                 <  1:769264/128‑1 (MQ=255)

                            aaTCTAAGTTTATAAACTTATATTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAAATACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGt                                                                                                <  2:1225840/128‑1 (MQ=255)

                             aTCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGtt                                                                                               >  1:792116/1‑128 (MQ=255)

                             aTCTAAGTTGCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGtt                                                                                               <  2:1522992/128‑1 (MQ=255)

                              tCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTTTTa                                                                                              >  1:1000261/1‑128 (MQ=255)

                                 aaGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAat                                                                                           <  1:728282/128‑1 (MQ=255)

                                 aaGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAat                                                                                           <  1:1548346/128‑1 (MQ=255)

                                 aaGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAat                                                                                           <  2:343122/128‑1 (MQ=255)

                                  aGTATCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAatt                                                                                          <  2:600112/128‑1 (MQ=255)

                                    tttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTTTTAAattat                                                                                        >  1:935081/1‑128 (MQ=255)

                                     ttCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattatt                                                                                       >  2:1897200/1‑128 (MQ=255)

                                       cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                     >  1:904125/1‑128 (MQ=255)

                                       cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTAtttt                                                                                     >  1:1039759/1‑128 (MQ=255)

                                       cTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTATTATAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATAAtttt                                                                                     >  1:999968/1‑128 (MQ=255)

                                        tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                    <  1:1460188/128‑1 (MQ=255)

                                        tAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTc                                                                                    <  2:75336/128‑1 (MQ=255)

                                         aaaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCAGTTTTTTAAAAAATTTTTAATTTTAATAAATGAATTATTTATCAAATAGTTAATTTAttttaa                                                                                   >  1:1298918/1‑126 (MQ=255)

                                          aaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAGAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCaa                                                                                  <  2:119870/128‑1 (MQ=255)

                                          aaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCaa                                                                                  >  2:1813159/1‑128 (MQ=255)

                                          aaaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAAAAAATGAATTATTTTTCAAATTGTTAAATTATTTTCaa                                                                                  >  2:2188149/1‑128 (MQ=255)

                                           aaTTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGAAATATTAGAAAACTACTAGCACATTTTTAAAAAATTTTTAAATTTAATAACTGAATTATTTTTCAAATTGTTAAATAATTTTCaaa                                                                                 <  2:1714948/128‑1 (MQ=255)

                                               attTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAatt                                                                                          >  2:533422/1‑115 (MQ=255)

                                                ttttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTATTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCAtt                                                                            <  1:1775986/128‑1 (MQ=255)

                                                 tttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTa                                                                           <  1:259187/128‑1 (MQ=255)

                                                  ttATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTAt                                                                          >  2:1276718/1‑128 (MQ=255)

                                                   tATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATc                                                                         <  2:1944246/128‑1 (MQ=255)

                                                     ttaaatgataaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTa                                                                       >  1:1517442/10‑128 (MQ=255)

                                                      cATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAt                                                                      <  1:2343840/128‑1 (MQ=255)

                                                         ttAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTaa                                                                   >  2:297523/1‑128 (MQ=255)

                                                         ttAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAAATATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTaa                                                                   >  2:2315329/1‑128 (MQ=255)

                                                           aaaaaaaTAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATc                                                                 >  2:264676/1‑128 (MQ=255)

                                                                aataatACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAttt                                                            >  1:855450/1‑128 (MQ=255)

                                                                 ataataCTTTTATTAGTTGAAATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAAtttt                                                           <  2:2001238/128‑1 (MQ=255)

                                                                  taataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTa                                                          >  1:2453763/1‑128 (MQ=255)

                                                                   aataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTAt                                                         >  2:1423535/1‑128 (MQ=255)

                                                                    ataCTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATg                                                        >  2:2217789/1‑128 (MQ=255)

                                                                         tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCGTTATCTATTAATCAATTTTATtctctt                                                   >  1:961619/1‑126 (MQ=255)

                                                                         tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑Gt                                                  >  1:1110698/1‑128 (MQ=255)

                                                                         tttATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTATAATTTTAATAACTGAATAATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATAAATCAATTTTATGCTC‑Gt                                                  >  1:2012632/1‑128 (MQ=255)

                                                                          ttttttttttatatatTTTAAAACTACTATCAATTTTTTAAATAATTTTTAATTTTATTAAATTAATTATTTTTCAAATTTTTAAATTTTTTTCAAATAATTATCTATTAATCAATTTTATGCTC‑Gtt                                                 <  2:1459295/118‑1 (MQ=255)

                                                                          ttattaTTTTATATATTAGAAAAATAATAGCAATTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCAATATCAATTAAACAATTTTATGCTC‑Gtt                                                 <  1:365639/128‑1 (MQ=255)

                                                                          ttattaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAattat                                                                                        >  2:2426443/1‑90 (MQ=255)

                                                                            attaGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGATC‑Gtttt                                               >  1:657940/1‑128 (MQ=255)

                                                                              taGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTAATTATCAAATAATTAAATTATTTACAAATCATTATCTATTAATAAATTTTATGATC‑Tttttat                                             >  1:1719008/1‑126 (MQ=255)

                                                                                 ttGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATTCTC‑Gttttttttt                                          >  1:1161560/1‑128 (MQ=255)

                                                                                      atatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTA‑Gtttttttttttttt                                     >  1:2079991/1‑128 (MQ=255)

                                                                                      atatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGATC‑Gtttttttttttttt                                     >  2:2389608/1‑128 (MQ=255)

                                                                                       tatTAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑Gttttttttttttttt                                    >  1:1339728/1‑128 (MQ=255)

                                                                                          tAGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑Gtttttttttttttttttt                                 >  1:402772/1‑127 (MQ=255)

                                                                                           aGAAAACTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTaa                                >  2:2456902/1‑127 (MQ=255)

                                                                                            taaaaATAATATCAATTTTTTAAAAAATTTTTAATTTTAATAAATTAATTATTTTTCAAATTTTTTAATTATTTTAAAATATTTATATATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTACa                               <  1:1436088/127‑1 (MQ=255)

                                                                                             aaaaCTAATTTCACTTTTTTAAAAAATTTTTAATTTTAATAAATTAATTTTTTTTCAAATTTTTAAATTATTTTAAAAAAATTATATATAAATCAATTTAATGGTC‑GTTTTTTTTTTTTTTTTTACaa                              <  1:2265489/128‑1 (MQ=255)

                                                                                              aaaaTACTAGCACTTTTTTTAAAAAATTTTAATTTTAATAAATTAATTATTTTTTAAATTTTTTAATTTTTTTTAAATAATTTTTTTTTAATTAATTTTTTGTTC‑Gttttttttttttttttttacaa                             <  2:2361484/128‑6 (MQ=255)

                                                                                              aaaCTACTAGCACTTTTTTAAAAAATTTTTTATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑Gtttttttttttttttttttaaa                             >  2:2116516/1‑123 (MQ=255)

                                                                                              aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTACaaa                             >  1:2047638/1‑128 (MQ=255)

                                                                                               aaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTACaaaa                            >  1:2217188/1‑128 (MQ=255)

                                                                                                  tactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTTTaaaaaaa                         >  1:2173410/1‑126 (MQ=255)

                                                                                                   aaataaaatttttaAAAAAATTTTTAATTTAAATAATTTATTTTTTTTTAAAATTTTTAAATT‑TTTTAAAAAAATTTTTTATTAATAAATTTTTTTTTT‑G‑TTTTTTTTTTTTTTTTAAAAAAATATa‑a                     <  2:942614/120‑1 (MQ=255)

                                                                                                     tatcaattttttAAAAAATTTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAAAAATTATTTATTAATAAATTTTATGCTC‑G‑TTTTTTTTTTTTTTTTACAAAAATATA‑at                    <  1:1586802/122‑1 (MQ=255)

                                                                                                     taGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTAAAAatatcgga                      >  1:2403660/1‑124 (MQ=255)

                                                                                                      aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTCTTTTTTTTTTTTTTTTTTTAAAAAAATaaa‑a                     >  1:492619/1‑128 (MQ=255)

                                                                                                      aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTTTAAAAAaatata                     >  2:438934/1‑126 (MQ=255)

                                                                                                        cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTAAATAaattta‑attt                  >  1:1943747/1‑128 (MQ=255)

                                                                                                         atttttttAAAAATTTTTTATTTTTATTAATTTATTTATTTTAAAAATTTTTAATTAATTTTAAAAAAATTTTAT‑TTAAATAAATTTATTGAA‑GTTTTTTTTTTTTTTTTTACAAAAATATA‑atttat                <  1:1201596/126‑1 (MQ=255)

                                                                                                          cTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTAAAAAAAAAAA‑atttat                >  1:53740/1‑128 (MQ=255)

                                                                                                           ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTTTAAAATAATATatttat                >  2:570806/1‑128 (MQ=255)

                                                                                                             ttttAAAAAATTTTTAATTTTAATAATTTTATTATTTTTAAAATTGTTAAATTATTTTAAAATAATTATATATTAATCAATTTTAT‑‑TA‑TTGTTTTTTTTTTTTTTTACAAAAATATA‑ATTTATTTGAt           <  2:1153012/128‑1 (MQ=255)

                                                                                                               ttAAAAAATTTTTAATTTTAATAAATTATTTATTTTTAAAATTTTTTAATTATTTTAAAATAATTATATATTAATCAATTTTATTCTC‑G‑TTTTTTTTTTTTTTTTACAAAAATATA‑ATTTATTTGAtt          <  1:1062196/128‑1 (MQ=255)

                                                                                                                 aaaataTTTTTAATTTTAATAAATTAATTATTTTTTAAATTTTTTAATTATTTTAAAATAATTATATATTAATAAATTTTATTTTA‑TTTTTTTTTTTTTTTTTTACAAAAATATA‑ATTTATTTGATTa         <  1:328835/128‑1 (MQ=255)

                                                                                                                    aaaTTTATAATTTTAATTACTGAAATATATTTGAAATTGTTAAATTATTTTACAATCATTATCTAATAATCAATTTTATGCTC‑GGTTTTTTTTTTTTTTTTACAAAAATATA‑ATTTATTTGATTAAAc      <  1:1898938/128‑1 (MQ=255)

||

TAAATTCATTCATACTTTTAGTCTCATAAATCTAAGTTTCTAAAATTATTTTATCATTTAAAAAAATAATACTTTTATTAGTTGATATATTAGAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTACAAAAATATA‑ATTTATTTGATTAAACGTAT  >  CP016816/420035‑420282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`