Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA38.6% 906.6 / 293.6 915intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (167/375);  new base A (280/61);  total (455/460)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 939 total aligned reads displayed.

GAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420127‑420378
                                                                                                                                    |                                                                                                                               
taaaaATAATATCAATTTTTTAAAAAATTTTTAATTTTAATAAATTAATTATTTTTCAAATTTTTTAATTATTTTAAAATATTTATATATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑ACa                                                                                                                                <  1:1436088/127‑1 (MQ=255)
 aaaaCTAATTTCACTTTTTTAAAAAATTTTTAATTTTAATAAATTAATTTTTTTTCAAATTTTTAAATTATTTTAAAAAAATTATATATAAATCAA‑‑TTTAA‑TGGTCG‑‑TTTTTTTTTTTTTTTTT‑ACaa                                                                                                                               <  1:2265489/128‑1 (MQ=255)
  aaaaTAATATCAATTTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTAAAATTGTTAAATTATTTTAAAATAATTATATAATAATAAA‑‑TTTTA‑TTCTCG‑‑TTTTTTTTTTTTTTTTT‑ACaaa                                                                                                                              <  1:1536060/128‑1 (MQ=255)
  aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTa‑aaaaa                                                                                                                              >  1:1667843/1‑128 (MQ=255)
  aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑Aaaaa                                                                                                                              >  1:1170391/1‑128 (MQ=255)
   aaataaaattaattttttAAAAAAATTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTTTTTTAAAATAATTATTTTTTAATCAA‑‑TTTTA‑TTTTCGT‑TTTTTTTTTTTTTTTTT‑ACaaa                                                                                                                              <  2:2199380/116‑1 (MQ=255)
   aaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑ACaaaa                                                                                                                             >  1:2217188/1‑128 (MQ=255)
    actacaAGAAATTTTTTAAAAAATTTTTAATTTTAAAAACTTAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑ACaaaaa                                                                                                                            <  1:2136623/128‑1 (MQ=255)
         tatcACTTTTTTAAAAAATTTTTAATTTTAAAAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑Taa                                                                                                                      <  2:2037408/125‑1 (MQ=255)
          atcttactatataaaaaTTTTTAATTTTAATAAATTAATTATTTTTAAATTTTTTAATTTATTTTAAAATAATTATAAATTAATAAA‑‑TTTTA‑TTATAT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAat                                                                                                                     <  1:1002713/116‑1 (MQ=255)
          aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑AAAaaaata‑aaat                                                                                                                     >  2:1851107/1‑128 (MQ=255)
           gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTT‑ACAAAAATA‑TAattt                                                                                                                   >  1:267619/1‑128 (MQ=255)
           gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTT‑AAAAAAATA‑TAtttt                                                                                                                   >  1:2101978/1‑128 (MQ=255)
            catttttttAAAAAATTTTTAATTTTAATAAATTAATTATTTTTCAAATTGTTAAATTATTTTAAAATAATTATATATTATTAAA‑‑TTTTA‑TTCTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAattt                                                                                                                   <  1:1569179/125‑1 (MQ=255)
            cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑A‑AAAAATA‑TAattta                                                                                                                  >  2:2097988/1‑128 (MQ=255)
             aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTT‑ACAAAAATA‑TAatttat                                                                                                                 >  2:342542/1‑128 (MQ=255)
               ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCGT‑TTTTTTTTTTTTTTTTT‑AAAAAAAAA‑TAattttt                                                                                                                 >  2:1955426/1‑126 (MQ=255)
               ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTT‑ACAAAAATA‑TAatttattt                                                                                                               >  2:588658/1‑128 (MQ=255)
               tttattAAAAAATTTTTAATTTTAATAAATTAATTATTTTTCAAATTTTTAAATTATTTTCAAATAATATTATATTAATCAA‑‑ATTTA‑TGCGCGT‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAatttat                                                                                                                 <  2:1990494/128‑1 (MQ=255)
                tttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑‑‑TTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGa                                                                                                             >  2:2367218/1‑128 (MQ=255)
                 ttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTT‑AAAAAAAAA‑TAATTTATTTGa                                                                                                             >  1:1121679/1‑128 (MQ=255)
                  tttAAAAAATTTTTAATTTTAAAAACTTAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATATTTTAAACAA‑‑TTTTA‑TGTTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGa                                                                                                             <  2:511771/128‑1 (MQ=255)
                    tAAAAAATTTTTAATTTTAATAACTTAATTATTTATCAAATTGTTAAATTATTTTCAAAACAATATATATTAAACAA‑‑TTTTT‑TGCCCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGAtt                                                                                                           <  1:1851270/128‑1 (MQ=255)
                      aaaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTTATTaa                                                                                                         >  1:1978402/1‑128 (MQ=255)
                        aaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTTATTaaaat                                                                                                      >  1:375789/1‑126 (MQ=255)
                        aaaTTTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTTAAATAATTATATTTTAATAAA‑‑TTTTT‑TTCTTT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAAc                                                                                                       <  2:30633/128‑1 (MQ=255)
                          ttttttaatattaatAAATTAATTATTTTTAAAATTTTTAAATTTTTTTTAAATAATTATCTAATAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGt                                                                                                     <  1:520496/116‑1 (MQ=255)
                             tttaattttaataatTTAATTTTTTTTTATATTTTTATATTTTTTTTAAATTATTATATATTAATAAATTTTTTT‑TTTTTT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGta                                                                                                    <  1:56565/119‑1 (MQ=255)
                             tttaattttaatAAATTAATTTTTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATCAA‑‑TTTTA‑TTCTAG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGtata                                                                                                  <  1:2334361/119‑1 (MQ=255)
                                 aatttaatAACTTTATTATTTTTTAAATTTTTAAATTATTTTAAAATCATTATATATTAATAAA‑‑TTTTA‑TTGTAGT‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATAttt                                                                                               <  1:2048944/123‑1 (MQ=255)
                                  tattaatAACTGAATTATTTTTCAAATTGTTAAAATATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCGT‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTa                                                                                              <  1:2013408/124‑1 (MQ=255)
                                   tttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTGATTAAACTTATATTTAtt                                                                                            >  1:907559/4‑127 (MQ=255)
                                   attaattaatttattattTTTATAATTTTTTATTTTTTTTCAAATAATTATTTATTAATAAA‑‑TTTTT‑TTTTTG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATg                                                                                            <  1:1026280/116‑1 (MQ=255)
                                     ttataaattatatattTTTTTAATTTTTAAATTATTTTTAAATTATTATATTTTAATTAA‑‑TTTTA‑TTTTTT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGtt                                                                                          <  1:12101/116‑1 (MQ=255)
                                     taatatatttatttttTTTTAAATTTTTAAATTTTTTTTAAATTATTTTATTTTAATAAA‑‑TTTTT‑TTGTTT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGtt                                                                                          <  2:676630/118‑1 (MQ=255)
                                     taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTTATTAAACGTATATTTATGtt                                                                                          >  2:1253797/2‑128 (MQ=255)
                                      aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCGT‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TATTTTATTTTATTAAACTTAAATTTAtttt                                                                                          >  1:1393142/1‑128 (MQ=255)
                                      aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCGT‑TTTTTTTTTTTTTTTTT‑AAAAAAAAATTAAATTTTTTAATTAAAATTttatttattt                                                                                           >  1:328042/1‑126 (MQ=255)
                                      aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTTATTAAACTTATATTTATGttt                                                                                         >  1:1817562/1‑128 (MQ=255)
                                       attatataaTTTTTTTTAATTTTTTTAAATTTTTTTAAAATAATTATTTTTTAATAAA‑‑TTTTT‑TTTTTT‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTta                                                                                        <  1:147848/121‑1 (MQ=255)
                                        tAACTTAATTATTTTTATAATTTGTTAATTATTTTAAATTCATAATCAATTAATCAA‑‑TTTTT‑TGGTCG‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTtaa                                                                                       <  2:1351853/128‑1 (MQ=255)
                                        tAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAAATA‑TAATTTATTTAATTAAAATTAtttttattttta                                                                                        >  1:21717/1‑128 (MQ=255)
                                           ttttatttttTTTAAAATTTTTAAATTTTTTTTAAATATTTTTATATTAATAAT‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                    <  1:2367481/124‑1 (MQ=255)
                                           cttatttattTTTAAAATTTTTTAAATATTTTAAAAAAATTATCTATTAATAAA‑‑ATTTA‑TTCTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                    <  2:1040941/123‑1 (MQ=255)
                                                tttttttttAATTTTTTATATTTTTTTTTTATATTTATTTATTTATAAT‑‑TTTTA‑TTTTTT‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATg                                                                               <  2:904125/125‑1 (MQ=255)
                                                ttattTTTCAAATTGTTAAATTATTTTCAAATCGTTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑AAATTTATTTTATTAAAATTATATTTTTTTTTAATAAAAAtt                                                                               >  1:1896600/1‑127 (MQ=255)
                                                ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TATTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTTATTAAACTTATATTTATTTTTATTAAAAATg                                                                               >  1:1337621/1‑128 (MQ=255)
                                                 tattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATATTATTAAAAATATATTTTTTTTTAAAAAAAATga                                                                              >  2:1582268/1‑127 (MQ=255)
                                                   tttttAATATTTTT‑AATTTTTTTTAAATAATTTTCTATTTTTAAT‑‑TTTTA‑TTCTCT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaa                                                                           <  2:1081970/128‑1 (MQ=255)
                                                    ttttaaattttttaaattTTTTTTTAAATATTTTTTTTTTTTTAA‑‑TTTTA‑TGGT‑G‑‑GTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaaa                                                                          <  2:2130926/128‑1 (MQ=255)
                                                       tCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑AAAAAAAAA‑TAATTTATTTTTTTAAAATTATATTTATTTTTAATAAAAATTAaaaaaa                                                                        >  1:748609/1‑126 (MQ=255)
                                                         aaaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTT‑AAAAAAAAA‑TAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATTAAaaagaaag                                                                     >  1:823639/1‑128 (MQ=255)
                                                          aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTTATAAAACATAATTTTTTTTTTAATAAAAAAGTAaaataatt                                                                     >  2:114798/1‑126 (MQ=255)
                                                             ttttAATTTATTTTAAAATAAATTTATTTTATTCAA‑‑TTTTT‑TTGTGT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGa                                                                  <  2:784487/126‑1 (MQ=255)
                                                              tttAAATTATTTTAAAATAATTATATATTAATTAA‑‑TTTTATTTTTTT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGa                                                                  <  1:883874/127‑1 (MQ=255)
                                                                 taaTTTTTTTTAAATAATTATTTTTTAATAAT‑‑TTTTT‑TTTTTT‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTg                                                              <  1:2456902/127‑1 (MQ=255)
                                                                   tttattTTAAATTAATTTTATATTATTTAT‑‑TTTTA‑T‑TTTA‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCa                                                           <  1:634591/127‑1 (MQ=255)
                                                                   attattTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCGT‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATTTAAAATAAATTTAATTGt                                                             >  1:59480/1‑128 (MQ=255)
                                                                      atatataaaTCAATATAAATTAATAAA‑‑TTTTA‑TTCTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCata                                                         <  2:2269872/122‑1 (MQ=255)
                                                                        tttCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGTAAAAGAAAGTTAATTTTCataat                                                       >  1:2291894/1‑128 (MQ=255)
                                                                         ttataaTTATTATTTATTAATTAA‑‑TTTTT‑TTTTTT‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCataata                                                      <  1:1301174/124‑1 (MQ=255)
                                                                          ttaattttttATTTTTTAATTAA‑‑TTTTT‑TTATTG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAtaataa                                                     <  2:818400/120‑1 (MQ=255)
                                                                              aTCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTTAAAAAAAATA‑TAATTTTTTTTATAAAAAGTAAATTTATTTTTAATAAAAATTAAAAAATAAGTAAATTGTAATAAtaaatt                                                  >  1:1709410/1‑128 (MQ=255)
                                                                                  ttATCTATTAATCAA‑‑TTTTA‑TGCTCGTTTTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTTTTTTTTTAAACTTATTTTTTTGTTTAAAAAAAATGTAATAAAATTTTAATTGTAATAAaaattt‑aat                                              >  1:1594202/1‑128 (MQ=255)
                                                                                  ttATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑‑TTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATtt‑aattaa                                           >  2:1409472/1‑128 (MQ=255)
                                                                                   tATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTTATTAAAAGTATATTTATTTTTAATAAAAATTTAAAATAAATTTAATTTTAATAATAATtt‑aattaa                                           >  1:4746/1‑128 (MQ=255)
                                                                                    atatATTAATCAA‑‑TTTTA‑TTTTAG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTaaa                                          <  1:1950833/125‑1 (MQ=255)
                                                                                      cTATTAATCAA‑‑TTTTA‑TGCTCGT‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTAATAAAACTTATATTTTTTTTTAATAAAAATTTAAAAAAAAGTTAATTTTAATAATAATTT‑AATAAAat                                         >  1:2249339/1‑128 (MQ=255)
                                                                                        aTTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTTATTAAACGAATTTTTATTTTTAAAAAAAATTTAAAATAAATTAAATTTTAATAATAATTT‑AATTAAataat                                      >  2:274408/1‑126 (MQ=255)
                                                                                          tAATCAA‑‑TTTTA‑TGCTCG‑‑‑‑TTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAACCGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAAc                                  >  2:1908691/1‑128 (MQ=255)
                                                                                            aTCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAAATTATTTGATTAAAATTATATTTATTTTTAAAAAAAATTTAAAAAAAATTTAATTTACATTATAATTT‑TAATAAattaaataa                                  >  2:2070474/1‑121 (MQ=255)
                                                                                             tCAA‑‑TTTTA‑TTCT‑G‑‑GTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACaa                                <  2:2329440/128‑1 (MQ=255)
                                                                                                a‑‑TTTTA‑TGCTCGT‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑AAATTTATTTATTAAAACTTATATTTTTTTTTAAAAAAAATGAAAAAAAAAGTAAATT‑TAAAAAAAATTTAAATTAAATAAATAAAAAt                               >  1:2079868/1‑128 (MQ=255)
                                                                                                      ttttttgttttttttttttttttttttt‑AATAAAATA‑TTATTTATTTGTTTAAATGTTTATTTATGTTTAATATAAATGGTTAAGAAAGTTAATTGTCATAATAATTT‑AATTAAATATATAACAATGt                             <  2:1532844/117‑1 (MQ=255)
                                                                                                         ttttttttttttttttttttttttt‑AAAAAAATA‑TAATTTATTTGATTAAAATTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAg                          <  1:1085717/120‑1 (MQ=255)
                                                                                                         tttttg‑‑TTTTTTTTTTTTTTTTT‑AAAAAAATA‑TAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGtt                        <  2:2442862/123‑1 (MQ=255)
                                                                                                          gCTCG‑‑‑TTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATTTAAAATAAAGTTAATTTTAATAATAATTT‑AATTAAATATAAAAAAATTTAAtttta                      >  1:696777/1‑127 (MQ=255)
                                                                                                            ttattttttttttttttttttt‑AAAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGttt                       <  2:956543/123‑1 (MQ=255)
                                                                                                             ttttttttttttttttttttt‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGtttt                      <  1:779362/124‑1 (MQ=255)
                                                                                                             ttttttttttttttttttttt‑ACAAAAATA‑TAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGtttt                      <  1:105060/124‑1 (MQ=255)
                                                                                                             cG‑‑TTTTTTTTTTTTTTTTT‑AAAAAATAA‑TAATTTATTTAATTAAGCTTAAATTTTTGTTTAATTAAAATGTAAAAAAAAGTAATTTTTCATAAAAAATT‑AATAAAAATTAAAACAATATAATTTTTaa                    >  2:1296640/1‑128 (MQ=255)
                                                                                                              tttttttttttttttttttt‑tAAAAAATA‑TAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGGATTGTCATAATAATTT‑AATTAAATATATAACAAAGTAAGTTTTa                     <  2:615585/125‑1 (MQ=255)
                                                                                                              tttttttttttttttttttt‑ATAAAAATA‑TAATTTATTTGATAAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTTTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTa                     <  2:720601/125‑1 (MQ=255)
                                                                                                              tttttttttttttttttttt‑ACAATAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTa                     <  1:2193783/125‑1 (MQ=255)
                                                                                                              tttttttttttttttttttt‑ACAAAAATA‑TTATTTATTTGATTAAAAGTATATTTATTTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTa                     <  1:660064/125‑1 (MQ=255)
                                                                                                              cgtttttttttttttttttt‑AAAAAAATA‑TAATTTATTTGATTAAACTTATATTTATTTTTAATAAAAATGTAAAAAAAAGTGAATTTTCATAAATATTT‑AAATAAATATATAAAAATTTAAGTTTTa                     >  2:755465/4‑128 (MQ=255)
                                                                                                                cgtttttttttttttttt‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGTAAAATAAAGTGAATTTTCATAATAATTT‑AATTAAATATATAACAATTTAATTTTTaaa                   >  2:1829111/3‑128 (MQ=255)
                                                                                                                cgtttttttttttttttt‑AAAAAAATA‑TAATTTTTTTGATTAAAAGTATTTTTATTTTTAATAAAAATGGAAAAAAAATGTAATTTTAATAATAATTT‑TAATAAAAAAATAAAATAGTAATTTTTaaa                   >  2:2181536/3‑128 (MQ=255)
                                                                                                                 ttttttttttttttttt‑ACAAATATA‑TAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTaaaa                  <  2:1188983/128‑1 (MQ=255)
                                                                                                                  tttttttttttttttt‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGGAAAACAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAAAAATGTAAGTTTTAAAac                 >  1:1925215/1‑128 (MQ=255)
                                                                                                                  tttttttttttttttt‑AAAAAAATA‑TAATTTTTTTTTTTAAAAGTTTTTTTATTTTTAATAAAAAAGTAAAAAAAATTTAATTTAAATAAAAATTT‑AAATAAAATTATAAAAAATTAATTTTTaaaaa                 >  2:542036/1‑127 (MQ=255)
                                                                                                                    tttttttttttttt‑AAAAAAATA‑TAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTAAAactt               <  1:2405012/128‑1 (MQ=255)
                                                                                                                     ttttttttttttt‑ATAATAATA‑TATTTTATTTGATTAAAAGTATATTTATGTTTTATTAAAATTGAAAAGAAAGTTAATTGTAATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTAAAactta              <  2:1463817/128‑1 (MQ=255)
                                                                                                                     ttttttttttttt‑AATAAAATT‑TAATTTATTTGATTTAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTAAAactta              <  2:1666215/128‑1 (MQ=255)
                                                                                                                       ttttttttttt‑AATAAAATA‑TAATTTATTTGATTAAAATTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTAAAacttact            <  2:433863/128‑1 (MQ=255)
                                                                                                                          cacaaaaacaCAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTAAAACTTACttt          <  1:965850/119‑1 (MQ=255)
                                                                                                                           ttttttt‑AAAAAAATA‑TAATTTTTTTGATTAAAAGTATATTTATGTTTAATAAAAATGTAAAAGAAATTGAATTTTAATAAAAATTT‑AATTAAATATTAAAAAATTTAATTTTTaaaaaaaaattttt        >  2:222633/1‑118 (MQ=255)
                                                                                                                                tt‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttt   <  2:1872054/128‑1 (MQ=255)
                                                                                                                                 t‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGTAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTAAATCTTACTTTTTTGtttt  <  2:855986/128‑1 (MQ=255)
                                                                                                                                 t‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt  <  1:1259751/128‑1 (MQ=255)
                                                                                                                                    |                                                                                                                               
GAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑‑TTTTA‑TGCTCG‑‑TTTTTTTTTTTTTTTTT‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTT‑AATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420127‑420378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑