Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816311,1490T.65.1% 509.3 / inf 473intergenic (‑72/‑242)JCVSYN2_01300/JCVSYN2_01305hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand):  ref base T (108/57);  new base . (159/149);  total (267/206)
Fisher's exact test for biased strand distribution p-value = 4.72e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.08e-02

Only 100 of 666 total aligned reads displayed.

GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276
                                                                                                                                   |                                                                                                                               
  aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACCCCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tat                                                                                                                               >  2:660849/1‑128 (MQ=255)
  aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tat                                                                                                                               >  1:950629/1‑128 (MQ=255)
  aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tat                                                                                                                               >  1:2032594/1‑128 (MQ=255)
  aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tat                                                                                                                               >  2:2158634/1‑128 (MQ=255)
        tGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑‑‑tatatatat                                                                                                                         >  1:447529/1‑128 (MQ=255)
         gTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatata                                                                                                                        >  2:2199789/1‑128 (MQ=255)
            ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatat                                                                                                                     >  1:2174737/1‑128 (MQ=255)
            ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatat                                                                                                                     >  2:317048/1‑128 (MQ=255)
            ataaCTAATCAAAATGAACTTAAAATTGAAATTAAATTTTTCTTTTTACACACAACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatat                                                                                                                     <  2:2374358/128‑1 (MQ=255)
             taaCAAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTTTTACATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatata                                                                                                                    <  1:1007440/128‑1 (MQ=255)
              aaataataaaaaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACAACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatat                                                                                                                   <  2:1461063/119‑1 (MQ=255)
              aaatAATACAAATTAACTTAAAATTGTAATTAACTTTTTAATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAAAATATATAACATACATTCAT‑‑‑‑tatatatatatatat                                                                                                                   <  2:282440/125‑1 (MQ=255)
              aaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACAAATATAACATACATTCAT‑‑‑‑tatatatatatatat                                                                                                                   >  1:902956/1‑128 (MQ=255)
               aCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatata                                                                                                                  >  2:2238994/1‑128 (MQ=255)
               aCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGAATCAATATATATATAACATACATTCTT‑‑‑‑ttgttatatatattta                                                                                                                  >  2:1288913/1‑128 (MQ=255)
               aCTAATCCAAATGAACTTAAAATTGTAATAAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatata                                                                                                                  >  2:1434502/1‑128 (MQ=255)
                cTAATAAAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTATAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑taaatatatatatatat                                                                                                                 <  2:671778/128‑1 (MQ=255)
                 tAATCGAAATGATCATAAATATGTTATTAACTATTACATTTTACACACACCTTATAAAAAAATAAAATAATTGTTACATACTATTCAAAACATATATAACATACATTAAT‑‑‑‑tatatatatatatatata                                                                                                                <  1:78751/128‑1 (MQ=255)
                 tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatata                                                                                                                >  2:253270/1‑128 (MQ=255)
                   aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatata                                                                                                              >  2:2451910/1‑128 (MQ=255)
                   aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatata                                                                                                              >  2:2315732/1‑128 (MQ=255)
                   aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCATTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑‑‑tatatatataaatatatata                                                                                                              >  1:1192250/1‑128 (MQ=255)
                   aTCAAAATTAATTTAAATATATAATTAAATTTTTATTTTTTAAAACTCATAATTAAAAAATAAATTAATTTTTACATACGATTCAATACATATATATCATAAATTCAT‑‑‑‑tatatatatatatatatata                                                                                                              <  2:1083859/128‑1 (MQ=255)
                    tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatata                                                                                                                <  1:1315102/125‑1 (MQ=255)
                    tCCAAATGAACATAAAATTTTAATTAACTTTTTCATTTTACACACACCTTATAAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatat                                                                                                             <  1:2108717/128‑1 (MQ=255)
                     ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatata                                                                                                            >  2:2070007/1‑128 (MQ=255)
                     acAAATGAACTTAAAATAGTAATTAACTTTTTCATTTTAAACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatata                                                                                                            <  2:1209921/127‑1 (MQ=255)
                          tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatataatgca                                                                                                       >  1:749039/1‑123 (MQ=255)
                          agAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATAAAAAAATAAAATACATGTTACATACGAATCAAAACATATAAAACATACATTCAT‑‑‑‑taaatatatatatatctatatataatt                                                                                                       >  2:423285/2‑125 (MQ=255)
                           gAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAAt                                                                                                      >  1:1498170/1‑128 (MQ=255)
                             aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatattaagaaa                                                                                                    >  2:512956/1‑121 (MQ=255)
                             aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatataatgcaa                                                                                                    >  1:700635/1‑122 (MQ=255)
                              cTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatataatactat                                                                                                   >  1:1375721/1‑121 (MQ=255)
                               ttAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatataaaaataaatataaaaaaaaata                                                                                                  >  1:1941664/1‑118 (MQ=255)
                               ttAAAATTGTAATTAACATATTCATTTTAAACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAata                                                                                                <  1:617147/128‑1 (MQ=255)
                                 aaaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatataatgaaatatc                                                                                                >  2:2350070/1‑118 (MQ=255)
                                  aaaTTTTAATTAAATTTTTCATTTTAAACACAACTTATTAAAAAATAAAATAATTGTTAAATAATATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAatat                                                                                               <  1:2278434/128‑1 (MQ=38)
                                    aTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTaa                                                                                           <  1:831898/128‑1 (MQ=255)
                                     atGTAATTAACTTTTTCATTTTACACAACCCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAAAATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATg                                                                                        <  1:2422707/127‑1 (MQ=255)
                                       gTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAAtt                                                                                        >  1:1431374/1‑127 (MQ=255)
                                        ttatataattttttATTATAAACACACCTTATTAAAAAATATAATAATTTTTATAAATTATAATAAACATATATAAAATAAATTTAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAAt                                                                                         <  2:958485/120‑1 (MQ=16)
                                        tAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGa                                                                                       >  1:1257121/1‑128 (MQ=255)
                                         aaTTAACTTTTTCATTTTACACACCCCATATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGaaaa                                                                                    <  2:1892682/128‑1 (MQ=255)
                                           ttAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATAATGCAATATGTAAATGAAAatagg                                                                                >  1:1706621/1‑126 (MQ=255)
                                            tAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAat                                                                                   >  2:1525851/1‑128 (MQ=255)
                                             aaatttttCATTTTTAACACCCATTATTAAATAATATAATAATTTTTACATACTATTCTAAACATATATAAAATATATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAata                                                                                  <  2:1228787/125‑1 (MQ=255)
                                             aaCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATTTAAATGAAAATATg                                                                                >  1:2314737/1‑128 (MQ=255)
                                              aCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACTTACATTCAT‑‑‑‑TATATATATATATATATATATATAT‑‑TGCAATATTTATGTGAAAatat                                                                                 >  2:1947926/1‑128 (MQ=255)
                                               cTTTTTCATTTTACACACAACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGt                                                                              <  1:2347269/128‑1 (MQ=255)
                                                   ttCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGtat                                                                            <  1:2238994/128‑1 (MQ=255)
                                                      aTTTTACACACCAATTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataat                                                                         <  1:486373/128‑1 (MQ=255)
                                                      aTTTTAAACACACCTTATTAAAAAATAAAATATTTTTTACATAATATTCAAAACATATATAAAATATATTAAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAg                                                                       <  2:395012/128‑1 (MQ=255)
                                                           acacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATTAAAATGAAAATATTGTataataaa                                                                      >  2:2032098/1‑126 (MQ=255)
                                                             aaacaacTTATTAAAAAATAAAATAATTGTTACATACTATTAAAAACATATATAACATAAATTAAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAAcc                                                                  <  1:659059/122‑1 (MQ=255)
                                                              cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATTCAATATGTAAATAAAAATATGTTATAATATCAACCttt                                                               >  2:1714266/1‑128 (MQ=255)
                                                                ccccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGTTATAATATCAACCGtt                                                               >  1:540794/1‑128 (MQ=255)
                                                                   cTTATTAAAAAATAAAATAATTGTTAATTACTTTTAAAAAAATATATAACATAAATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                            <  2:602556/128‑1 (MQ=255)
                                                                     tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGAAAACTTATATaa                                                          >  1:326421/1‑128 (MQ=255)
                                                                      attaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                         <  2:364028/128‑1 (MQ=255)
                                                                      ataaaaaaaTAAAAAACTTGTTACATACTATTCAAAAAATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTtata                                                           <  2:2394700/125‑1 (MQ=39)
                                                                       ttaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAATAAAAAATATTGTATAATAGAAACCTTTTATaaat                                                        >  2:1039599/1‑127 (MQ=255)
                                                                          aaaaaTAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATATAAAAAAAAATATGATATAATATCAACATATTATAAATTaa                                                     >  1:1043406/1‑128 (MQ=255)
                                                                           aaaataaaatACTTTTTACATAATATTCAAAAAATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaa                                                    <  1:278792/128‑1 (MQ=255)
                                                                           aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAATATATGTTATAATATAAACAGTTTATAAATTaaa                                                    >  1:1590961/1‑128 (MQ=255)
                                                                             aatataataATTTTTATATAAGATTAAAAACATATATAAAATATATTAATTATATATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAg                                                        <  2:2278039/128‑1 (MQ=25)
                                                                             aataaaataaTTGTTAAATAATATTCAAAAAATATATAACATACATTAAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                  <  2:1328169/128‑1 (MQ=255)
                                                                             aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATAAAATATTTAAATTAAAATATTGTATAATAACAAAAGTTTATaaatatctta                                                  >  2:572009/1‑121 (MQ=255)
                                                                              aaaaaataATTGTTACATTATATTCAAAACATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaa                                                   <  2:810214/126‑1 (MQ=39)
                                                                               taatataTTTGTTAAATAAGATTCAAAAAATATATAAAATATATTAAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                  <  2:1615483/128‑1 (MQ=38)
                                                                               taaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATTTAAATGAAAATATGTTATAATAGCAACAGTTTATAAAGaaaaaaaa                                                >  2:1847582/1‑128 (MQ=255)
                                                                                aaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATGAAATATGTAAATGAAAATATGTTATAATATCAAAAGTTTATAAATTaaaaaa                                                 >  2:1001808/1‑128 (MQ=38)
                                                                                 aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATTTATATAAAA‑‑AAATATATAAATAAAAATTTTATATAATAGAAAGAGTATAAAAATTAAAAAAATa                                              >  1:1620814/1‑128 (MQ=255)
                                                                                    taattGTTACATAATATTCAAAACATATATAAAATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTa                                           <  2:1970862/125‑1 (MQ=255)
                                                                                     aCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATTAAAATATGTTATAATATCAACCTTTTATAAATTAAAAAAATAGTac                                          >  1:1762517/1‑127 (MQ=255)
                                                                                       ttGTTATATAATTTTAAAAATATATATAAAATATATTAT‑‑‑‑TTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAat                                        <  2:2096306/128‑1 (MQ=255)
                                                                                       ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAAAATGAAATATGAAAATAAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAat                                        >  2:1166315/1‑128 (MQ=255)
                                                                                       ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAat                                        >  1:1122948/1‑128 (MQ=255)
                                                                                         gTTACATACGATTCAAAACATATATAACAAACATTCAT‑‑‑‑TATATATATATATATATATATAATCA‑‑‑AATATGTAAATGAAAATATATTATAATAAAAAAAATTTATAAAGAAAAAAAATAATAAAtataa                                    >  1:36885/1‑127 (MQ=255)
                                                                                             aaTACTATTCTAAACATATATAAAATACATTAAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATactact                                <  2:482681/127‑1 (MQ=255)
                                                                                              aTACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAAAATATGTTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATAtactac                                 >  1:1838935/1‑128 (MQ=255)
                                                                                                     tCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGGTATAATAGCAACCTTTTATAAAGTAAAAATATAATAAATATACTAattattaa                          >  2:179246/1‑126 (MQ=255)
                                                                                                        aaaCATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATTAAAATATTGTATAATAGCAACCTTTTATAAATTAAAAAAATAGTATATATACAAATTATTTACta                       >  1:1089378/1‑128 (MQ=255)
                                                                                                         aaCATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                      <  2:1257121/128‑1 (MQ=255)
                                                                                                          atatatatatAATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaat                     <  2:719762/126‑1 (MQ=255)
                                                                                                          aCATATATAACATATATTC‑‑‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaataa                   <  2:1393903/128‑1 (MQ=255)
                                                                                                          aCATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATTCTATATTTAAATGAAAATATTGTATAATAGCAACCGTTTAATAAGTAAAAAAAAAGTAAATAAACTAAATAtttcaaaaa                     >  2:1556628/1‑122 (MQ=255)
                                                                                                            atatatAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATTTAAAAGAAAATATGGTATAATATAACACGTTTATAAAGAAAAAAAATAAAAAATATACAACTAATTAACtaaaaa                   >  1:1531404/1‑128 (MQ=255)
                                                                                                              atataACATACATTCAT‑‑‑‑TATATATATATATATATATATATAT‑‑TGAAATATGTAAATGAAAATATGTTATAATAGCTACCGTTTTTTATGTAAAATAATAGTATATTTTCTAATAATTTAATATTataa                 >  1:1787249/1‑128 (MQ=255)
                                                                                                              atataACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGATATATTAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACATATTTACTAATAAAATc               >  2:1775241/1‑128 (MQ=255)
                                                                                                               tataACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATATAAAAGAAAATATGTTATAATAGAAAACTTATATAAAGTAAAAAAATAGTAAATATAATACTTAATTACAAAAAAAAt                >  1:1059888/1‑128 (MQ=255)
                                                                                                                ataACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATc               >  1:1890198/1‑128 (MQ=255)
                                                                                                                ataACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGAAACCGTTTATAAAGTAAAAAAATAGTAAATATAATACTAATTAAATAATAAAAta               >  2:838317/1‑127 (MQ=255)
                                                                                                                    catacatTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAAtata             >  1:1457800/1‑128 (MQ=255)
                                                                                                                     atacatTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAAAGAAAATATTGTATAATAGCAACAGTTTATAAAGAAAAAAAATAGAAAATATACTACTTATTTACTAATAAAATATAttt          >  2:757650/1‑128 (MQ=255)
                                                                                                                      tacatTCAT‑‑‑‑TATATATATATATATATATATATATAATTAAATATGTAAATTAAAATATGTTATTATAGAAACCGTATATATAGTAAAAAAATTGAATAAATACTACTTATTTTCAAAAAAAatatata           >  2:633329/1‑127 (MQ=19)
                                                                                                                      tacatTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTAATAATAAAATCTAtttt         >  1:2389083/1‑128 (MQ=255)
                                                                                                                      tacatTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATAAAATATTTAAATTAAAATATTTTATAATAGAAAAATAGTATATAGTAAAAAAATATAATATATACTAATTATATAATATAAAAATATAtttt         >  2:893424/1‑128 (MQ=255)
                                                                                                                        cattcat‑‑‑‑tATATATATATATATATATATATATAAATATATATTTATAATAAAATATTATATAATAGCAACCGTTTATAAATAAAAAAAATAATAAATATACTACTTATATAATAAAAAAATCTAtttt         >  2:1667901/1‑128 (MQ=255)
                                                                                                                           tcat‑‑‑‑tATATATATATATATATATATATATAATGCAATATGTAAATGAATATATTGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTAATTATATAATAATAATATATATAtttat      >  1:1158772/1‑128 (MQ=38)
                                                                                                                                   tatatatatatatatatatatatataTTTATATTTATAAATAAATATATTTTATAATAACAAAATTATAAAAAATAAAAAAATAAAAAATAAAAGAATTATTAAATAATAATATATATTtttataaaa  >  1:247141/1‑124 (MQ=255)
                                                                                                                                   |                                                                                                                               
GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: