Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9120GT36.5% 692.1 / 123.7 500intergenic (+296/+162)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (92/220);  new base T (178/1);  total (279/221)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 523 total aligned reads displayed.

AAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203785‑204039
                                                                                                                                       |                                                                                                                                  
  aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGtt                                                                                                                                  >  1:2291683/1‑127 (MQ=255)
    aaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTT‑T‑aaaa                                                                                                                              >  1:1187974/1‑128 (MQ=255)
       taaaaaaTTTTCAATTAAACCCATTTTTAAAAAATCCTATTTTTTATGTTTTTTATTATAATTATCAAAATTAAAACGTTTTAAAATTTTT‑TTTTTTA‑TG‑CTTT‑T‑‑‑TTTTTTTTTTTTTTTTGT‑aaaaa                                                                                                                             <  2:1092790/128‑1 (MQ=255)
       aaaaaatTTTTAATTTAAATCCATTTTTAAAAAATCATATTTTATTTGCTTTTTTTTTAAATTATCAAAATTAAAAATCTTTCAAATTTTT‑TTTTTTT‑GG‑CTTT‑T‑‑‑TTTTTTTTTTTTTTTTGT‑aaaaa                                                                                                                             <  1:199971/127‑1 (MQ=255)
        aaaaatTTTTCATTTAAATTCAATTTTAAAAAATCCTATTTTCTTTGCTTTTTATTATACTTATAAAAATTAAAACGCTTTAAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑a                                                                                                                          <  1:761929/128‑1 (MQ=255)
         aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTATT‑aaaatata                                                                                                                          >  1:1665499/1‑124 (MQ=255)
          atatTTTTTATTTAAATCCATTTTTTAAATATCCATTTTTTTATTGTTTTTATTTTAATTAATAAAATTAAAAAGCTTTTAAATTGTT‑TTTTTTATGG‑T‑TT‑T‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑aa                                                                                                                         <  2:2334405/126‑1 (MQ=255)
          aattttttCATTTTAAGCGTTTTGTAAAAAACCGTATGTTCTAGGCTTTTTTTTATTCTTATCAACATTACAACCCTTTCAAAGTGTA‑TTTTTTA‑GG‑G‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑aa                                                                                                                         <  1:2043290/125‑1 (MQ=255)
          aaatTTTTCATTTAAAGCCATTTTTAAAAAAGAGTTTGTTCTATGCTTTTTATTATACTTATCAAAATTAAAACGCTTTAAAATTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑aaa                                                                                                                        <  1:2342161/128‑1 (MQ=255)
            atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGT‑AAATAT‑taatt                                                                                                                      >  1:1023166/1‑126 (MQ=255)
             tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTT‑T‑Taaaat‑aaaaata                                                                                                                    >  1:992030/1‑128 (MQ=255)
              ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑CTTT‑T‑‑‑TTTTTTTTTTTTTTTTAT‑aaaaaa‑aaaata                                                                                                                     >  1:716369/1‑126 (MQ=255)
              ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑aaaaaa‑aaaact                                                                                                                     >  1:1375865/1‑126 (MQ=255)
               tttttattAAAGCTATGTTTAAAAATTCTTTTGTTCTTGGCTTTTTATTTTAATTATAAACATTTATACGCTTTCAAAGTGTT‑TTTTTTT‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTa                                                                                                                    <  2:942465/122‑1 (MQ=255)
               ttttaattAAATTCATTTTTAAAAAATCCTATTTTTTTTGGTTTTTTTTTTAATTATCAAAATTTCAACGCTTTAAAATTTTT‑TTTTTTA‑GG‑C‑TT‑GTT‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGt                                                                                                                     <  1:887634/122‑1 (MQ=255)
               tttAATTTATAGGCATTTGTTAAAAATCATATTTTTTAGGCTTTTTATTAATCTTATAAACATTTCAACGCTTTTAAATTTTT‑TTTTTTA‑GG‑CTTT‑T‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTa                                                                                                                    <  2:292909/128‑1 (MQ=255)
                       aaataaaTTTGTAAAAAAGACTATTTTCTAGGTTTTTTATTATACTTATCAAAATTAAAACGTTTTCAAAGTTTA‑TTTTTTA‑TG‑A‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGa                                                                                                           <  1:1522019/122‑1 (MQ=255)
                       aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGATTTCAAAGTGTA‑TTTTTTA‑GT‑A‑TT‑GTT‑TTTTTTTTTTTTTTTTat‑aaaaat‑aaaataaataatag                                                                                                             >  1:391741/1‑118 (MQ=255)
                         aGCCATTTTATAAAAATCCAATGTTTTATGCTTTTTATTTTAATTATAAACATTACAACGCTTTCAAAGTTTT‑TTTTTTT‑TG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGAt                                                                                                          <  2:1976748/128‑1 (MQ=255)
                           ctaTTTTTAATAAATCTTTTTTTCTAGTTTTTTTTTTTTAATTTTTAACATTAAAACGCTTTAAAATTTTT‑TTTTTTT‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCa                                                                                                        <  2:492290/126‑1 (MQ=255)
                                 gTAAAAAATCCTATTTTCTTGGTTTTTTATTAATCTTATTAAAATTAAAACGCTTTTAAATTGTT‑ATTTTTT‑GG‑T‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCaaa                                                                                                  <  2:2361491/128‑1 (MQ=255)
                                 gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAAGTAAGATTTGGATAAACCaaa                                                                                                  >  2:1146113/1‑128 (MQ=255)
                                  tAAAAAATCCTATGTTCTAGGCTTTTTATTATACTTATCAAAATTAAAACGATTTCAAAGTTTA‑TTTTTTA‑TG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCaaaa                                                                                                 <  1:2174225/128‑1 (MQ=255)
                                  tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GTT‑TTTTTTTTTTTTTTTTTT‑AATAAT‑AAAAATAATATTTGGTTAAACCaaa                                                                                                  >  1:1421713/1‑128 (MQ=255)
                                   aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑TAAATTTATATTTGGGAAAACCAAAAc                                                                                                >  1:2387502/1‑128 (MQ=255)
                                   aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAA‑AAAAGTATGATTTGGATCATCAaaaaa                                                                                                >  1:2469165/1‑127 (MQ=255)
                                   aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAATTAATATTTGATTAAACCaaaaat                                                                                               >  1:869439/1‑126 (MQ=255)
                                   aaaaaaGCCTATGTTCTAGGCTGTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑TAAAAT‑AAAATTAAGATTTTGTTAAACCAAAAc                                                                                                >  1:521667/1‑128 (MQ=255)
                                         gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GTTTTTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACtata                                                                                            >  1:1870716/1‑128 (MQ=255)
                                          aatATTTTTTATGCTTTTTATTTTACTTATCAACAATAAAACTCTTTAAAAGTTTT‑TTTTTTA‑GG‑CTTT‑T‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCa                                                                                         <  1:2121443/126‑1 (MQ=255)
                                           cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAATAAATATTTTGATAAACCaaaaaaaaataaa                                                                                        >  2:706345/1‑119 (MQ=255)
                                             attttatttgtttttttttATATTTTTAAACATTAAAACTCTTTAAAATTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCaaaa                                                                                      <  1:2064080/117‑1 (MQ=255)
                                             aTGTTATATGATTTTTATTATAATTTTAAACATTTCAAAGCTTTAAAAGTGTT‑TTTTTTA‑TG‑G‑TT‑GTT‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                                       <  1:1926799/128‑1 (MQ=255)
                                               tttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAATTGTA‑TTTTTTA‑TG‑C‑TT‑G‑‑‑‑TTTTTTTTTTTTTTTGT‑AAAAAA‑AAAAAAAATATTTGAATAAACAAAAATAATTTAAAAAAAA‑t                                                                                 >  2:2010410/2‑128 (MQ=255)
                                                 ttttttttttttATTATATTTTTTAAATTTATAAATTTTTAAAATTTTA‑TTTTTTA‑TT‑A‑TT‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTa                                                                               <  1:351180/121‑1 (MQ=255)
                                                  cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAATTAATATTTGTAAAAACCAAAAATATATAAAAAAAA‑tt                                                                                >  2:640155/1‑128 (MQ=255)
                                                  cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAAGTAATATTTTGAAAAACAAAAAATATATAAAAAAAA‑tt                                                                                >  2:147720/1‑128 (MQ=255)
                                                  cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAT‑AAAAATAATATTTTTATAAAAAAAAAAAATAAAAAAAAAA‑tt                                                                                >  2:798464/1‑128 (MQ=255)
                                                  cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑A‑TT‑G‑‑‑TTTTTTTTTTTTTTTTTT‑TAAAATAAAAATTAATATTTTTATAAAACAAAAATATAAAAAAAAAA‑tt                                                                                >  1:928733/1‑128 (MQ=255)
                                                    aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGAGTA‑TATTTTA‑GG‑C‑TT‑G‑‑‑TATTTTTTTTTTTTTT‑T‑AAAAAA‑AAAAATAAAAATTAGAAACAACAAAACTA‑ATTAAAAAAA‑ATaaaaa                                                                           >  2:2114303/1‑128 (MQ=255)
                                                     tgatttttATTATAATTATAAAAATTACATAGCTTTCAAAGTGTT‑TTTTTTA‑TT‑G‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTaaaa                                                                            <  2:2382986/125‑1 (MQ=255)
                                                         ttttATAATAATTAATAAAATTAAAACGCTTTAAAATTTTATTTTTTTT‑GGTT‑TT‑T‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTaaaaaa                                                                          <  2:2161743/128‑1 (MQ=255)
                                                          tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAATTAAAATTTGTATCAAACAAAAATATTTCAAAAAAA‑TTaaaaaaat                                                                        >  1:2222569/1‑127 (MQ=255)
                                                            tattatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAA‑AAAATTAAAATTTGGATAAAAAAAAAATATAAAAAAAAAA‑TTaaaaaaaaat                                                                      >  1:497876/1‑126 (MQ=255)
                                                             tttaaaattattaACATTATAACGTTTTCAAAGTGTT‑TTTTTTT‑GG‑‑‑‑T‑‑‑‑‑TTTTTTTTTTTTTTTTGA‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTAAATCAAAAAAA‑TTAAAAAAAAtagttta                                                                 <  1:2156965/121‑1 (MQ=255)
                                                             attatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAATTAATATTTGGATAAACCAAAAAAATATAAAAAAAA‑TTAAAAAAAAtaa                                                                     >  1:1957802/1‑127 (MQ=255)
                                                             attatACTTATCAACATTACAACGCTTTCAAAGTGTA‑GTTTTTA‑GG‑C‑TT‑GTT‑TTTTTTTTTTTTTTTTGT‑TAAAAT‑AAAATTAAATTTTTGTTAAACCCAAAC‑ATATAAAAAAAA‑AAaataaaaaaga                                                                     >  1:1232254/1‑125 (MQ=255)
                                                              taaatcTTATAAAAATTACATCTGTTTCTAACTGTA‑TTTTTTA‑GG‑C‑TT‑T‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAAAtagtt                                                                   <  1:2141693/123‑1 (MQ=255)
                                                               tataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAA‑AAAATTAAGATTTGGATCAAACAATACTA‑ataaaaaaaa‑ataaaaaaaaataatt                                                                  >  1:641568/1‑122 (MQ=255)
                                                                 taCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAAGTAAAAATTGGTAAAAACAAAAATATATAAAAAAAT‑ATAAAAAAAAttttttt                                                                 >  2:1356627/1‑122 (MQ=255)
                                                                 taCTTATATAAATTAAATAGCTTTAATATTTTA‑TTTTTTA‑GG‑‑‑TT‑T‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAAAtagtttagt                                                               <  2:1765398/128‑1 (MQ=255)
                                                                   cTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTTA‑AAAAAT‑AAAATAAATATTTGTAAAACAAAAAAATATAAAAAATAAT‑TTTAAAAATAtattttagtt                                                              >  1:191495/1‑128 (MQ=255)
                                                                    ttATCAAAATTATATCTTTTTAAAAGTTTT‑TTTTTTATTG‑T‑TT‑T‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAAAtagtttagtt                                                              <  2:591945/128‑1 (MQ=255)
                                                                      aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GTT‑TTTTTTTTTTTTTTTTTT‑AAAAAA‑AAAAGTAAATTTTGGTACAACCAAAATTATAATAAAAAAA‑TTAAAAAAAAttttttttttg                                                             >  1:1729040/1‑118 (MQ=255)
                                                                      aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑TAAAAA‑AAAATTATTATTTTGATACACCAAAAAATTTTAAAAAAAATTTAAAAAAAAtatattttttt                                                             >  2:2305279/1‑119 (MQ=255)
                                                                       tCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAATTAAAATTTTG‑TTAAACAAAAAAATATTAAAAAAA‑ATAAAAAAAAaatttttattttttt                                                         >  1:1549160/1‑119 (MQ=255)
                                                                         aaaaTTACAACGCTTTAAAAGTGTT‑TTTTTTA‑GG‑T‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGttt                                                        <  1:2026850/125‑1 (MQ=255)
                                                                           cATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TTCT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAAATAATATTTGGTTAAAAAAAAACTAAAAAAAAAAAA‑ATAAAAAAAATAATTTATTTGAtttta                                                       >  1:115441/1‑127 (MQ=255)
                                                                           cATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAATTAAGATTTGGAAAAAACAAAACTTTATAAAAAAAA‑TTAAAAAAAATATTTTTTTTGGGttta                                                       >  2:1385480/1‑127 (MQ=255)
                                                                             ttACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GTTTTTTTTTTTTTTTTTTTTT‑AAAAAA‑AAAATTAAAATTTGGTAAAACCAAAACATTATAAAAAAAA‑TTAAAAAAAATattttattttatttta                                                       >  1:2251605/1‑127 (MQ=255)
                                                                               aCAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAATTAATATTTTGATAAACCAAAAAAATATAAAAAAAA‑TTAAAAAAAATATTTTATTTTATTTTaaaaa                                                   >  2:2067860/1‑127 (MQ=255)
                                                                               aCAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAATATTTGGATCAACCAAAACTATATAAAAAAAA‑TTAAAAAAAATATTTTAGTTGAGTTTaaaaaa                                                  >  1:1776001/1‑126 (MQ=255)
                                                                                    gCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GTT‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAAGTAATATTTTGAAAAAACAAAACTATATAAAAAAAA‑TTAAAAAAAAAATTTTAGTTTATTTTaaaaaaatc                                               >  1:1841121/1‑123 (MQ=255)
                                                                                    gCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAAGTAATATTTGGATCAACCAAAAATATATCAAAAAAA‑TTAAAAAAAATATTTTATTTGATTTTAAAAACAGCa                                              >  1:1464554/1‑128 (MQ=255)
                                                                                    gCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAA‑AAAAGTAACTTTTGGTTCACCCAAACCTATAAAAAAAAAA‑TTAAAAAAAAAATTTAATTTAAGTTACAAATATgaa                                              >  1:302658/1‑126 (MQ=255)
                                                                                      tttCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAA‑AAAAGTAAAATTTGGAAAAAACAAAAATAAAACAAAAAAA‑TTAAAAAAAATAGTTTAGTTTAGTTTAAAATCTTCata                                            >  2:1854146/1‑128 (MQ=255)
                                                                                       ttCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAATTAACATTTGGATCAACCAAAAATATATAAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCatata                                          >  1:466841/1‑128 (MQ=255)
                                                                                        ccAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑GTT‑TTTTTTTTTTTTTTTTTT‑AAAAAA‑AAAATTAATTTTTGGATAAACCAAAAAAATTAAAAAAAAA‑TTAAAAAAAATATTTTATTTTATTTTaaaaaatgaaata                                           >  1:277871/2‑119 (MQ=255)
                                                                                         cAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAAGTAAATTTTGGATAAACCAAAAATTTATAAAAAAAA‑TTAAAAAAAAATTTTTATTTTATTTTAAAATATGAatttaat                                        >  1:564080/1‑126 (MQ=255)
                                                                                         cAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAAATTTGGAACAACAAAAAATAATTCAAAAAAA‑TTAAAAAAAATATTTTATATAATTTTAAAATAAGAAtatata                                        >  1:1122710/1‑128 (MQ=255)
                                                                                          atatgtttttttattA‑GG‑T‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatatat                                         <  2:537988/119‑1 (MQ=255)
                                                                                               gtA‑TTTTTTA‑GG‑C‑TT‑GTTTTTTTTTTTTTTTTTTTTT‑AAAAAA‑AAAATTAAAATTTGGATAAACAAAAAATATAACAAAAAAA‑ATAAAAAAATAATTTTTTTTGATTTTAAAAAAAGCATATATATTa                                     >  2:2026389/1‑128 (MQ=255)
                                                                                               gtA‑TTTTTTA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAA‑AAAATTAAGATTTGGATAACCCAAAACTATATAAAAAAAA‑TTAAAAAAAATTGTTTTTTTTAGTTTCAAATCTGGAATTATAGTACa                                   >  2:1944782/1‑128 (MQ=255)
                                                                                                        tA‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAA‑AAAATTAAAATTTGGATAAACAAAAAATATATAAAAAAAA‑TTAAAAAAAAAATTTTAGTTTATTTTAAAATCTGCATATTTTTTACAAATGAAtt                           >  1:1079967/1‑128 (MQ=255)
                                                                                                         a‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAATTATTTTTTTTAGAAACAAAAAATATTAAAAAAAAA‑TAAAAAAAAATATTTTAGTTTTGTTTCAAATCGTAAAATATATAAAAAAGTAAttt                          >  1:2310161/1‑128 (MQ=255)
                                                                                                         a‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAT‑AAAAGTAAGATTTTGATAAACAAAAAAAATAAAAAAAAAA‑TTAAAAAAAATAGTTTAGTTAAGTTTAAAATCTTCAAATTTATTAAAAATGAAttt                          >  2:36398/1‑128 (MQ=255)
                                                                                                         a‑GG‑C‑TT‑GT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAA‑AAAAGTAATATTTGGTACAACCAAAAAAATATAAAAAAAA‑TTAAAAAAAATATTTTAGTTGATTTTCAAAACTGCATTAATATTAAAAAGGAAttt                          >  2:2122707/1‑128 (MQ=255)
                                                                                                              c‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATAAACAAAAAATATATCAAAAAAA‑TTAAAAAAAATATTTTATTTTAGTTTCAAAACTGCATATATATTACAAAGTAATTTAtta                      >  1:126604/1‑126 (MQ=255)
                                                                                                              aggcttgtttttttttttttttttttt‑AAAAAT‑AAAATTAAGATTTGGATAAACCAAAACAAAAACAAAAAAA‑TTAAAAAAAAAAGTTTAGTTTATTTTAAAATATGCATATATATTACAAATGAAtt                           >  2:1880922/10‑128 (MQ=255)
                                                                                                               tttttttttttttttttttttttttt‑AAAAAT‑TAAATTAATATTTTGATCAATCAAAACTTTATTAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:2432458/120‑1 (MQ=255)
                                                                                                                tttattttttttttttttttttttt‑AAATAT‑TAAAGTAATTTTTGTATTAAAAAATACTATATTAAAATAA‑TTAAAAAAAATAGTTTAGTTGTGTTTAAAATCTGCATATTTAGTACAAATGAATTTa                         <  2:1028100/121‑1 (MQ=255)
                                                                                                                 ttttttttttttttttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  2:1548460/122‑1 (MQ=255)
                                                                                                                  ttttttttttttttttttttttt‑AAAATT‑AAAATTTTGATTTGGATGAAAAAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATg                       <  2:125635/123‑1 (MQ=255)
                                                                                                                  tttttttttttttttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                       <  1:2080647/123‑1 (MQ=255)
                                                                                                                  attttttttttttttttttttGT‑AAAAAT‑AAAATTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                       <  1:2194008/123‑1 (MQ=255)
                                                                                                                   g‑‑‑TTTTTTTTTTTTTTTTGT‑AGAAAT‑AAAACTAAGATTTGGAACCACCAAAACTATATCAAAAAAA‑TTAAAAAAAATATTTTATTTGAGTTTCAAATCTGAATATAAACTACAAAGGAAATTATGATat                   >  2:2441510/1‑127 (MQ=255)
                                                                                                                        tttttttttttttttGT‑AAATAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  2:869439/128‑1 (MQ=255)
                                                                                                                        tttttttttttttttGT‑AAAAAT‑ATAAGTAAGATTTGGATCAACCAAAAATATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  2:1291554/128‑1 (MQ=255)
                                                                                                                         ttttttttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCACAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                <  2:2249660/128‑1 (MQ=255)
                                                                                                                           ttttttttttttGT‑AATAAT‑AAAAGTAAGATTTGGAGCAACCAAAACTATATAAAAAAAA‑TTTAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  1:1288454/128‑1 (MQ=255)
                                                                                                                           ttttttttttttGT‑AAATAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  1:1977475/128‑1 (MQ=255)
                                                                                                                            tttttttttttGT‑ATATAT‑AAAAGTTTGATTTGTATAAACCAAAACTATATAAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa             <  2:1724408/128‑1 (MQ=255)
                                                                                                                            tttttttttttGT‑AAAATT‑AATAGTAAGATTTTGATCTAACAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa             <  2:1629163/128‑1 (MQ=255)
                                                                                                                                tttttttGT‑AAAAAT‑AAAAGTAAGATTTGGTACAACCAAAAATATATAAAAAAAA‑TAAAAAAAAAAATTTTATTTTATTTTCAAAAGATAATATATAATAAAAAATATATTATGATACaaaaaaaagt         >  1:807579/1‑125 (MQ=255)
                                                                                                                                 ttttttGT‑ATAAAT‑AATAGTAAGATTTGTATAAAAAAAAAATATATCAAAAAAA‑TTAAAAAAAATATTTTATTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa        <  2:758501/128‑1 (MQ=255)
                                                                                                                                   ttttGT‑TATAAT‑AAAAGTTAGTTTTGGATTAACAAAAACTATATCAAAAAAT‑TTTAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt      <  2:1187974/128‑1 (MQ=255)
                                                                                                                                    tttGT‑AAAAAT‑AAAAGTAAGATTTGGATCACCCAAAAAAAAAAAAAAAAAA‑TTAAAAAAAATAGTTTATTTTAGTTTCAAATATTCAATTATAGTACAAAGGAATTTATGAAAGAAAAAAATttatta     >  2:2271089/1‑128 (MQ=255)
                                                                                                                                     ttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTAAATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:2098463/128‑1 (MQ=255)
                                                                                                                                     ttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACAAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat    <  2:2219429/128‑2 (MQ=255)
                                                                                                                                       gT‑AATAAT‑AAATGTAAGATTTGGATTAATCAATAATATATAATAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt  <  1:2364383/128‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                  
AAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑C‑TT‑G‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAA‑TTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203785‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑