Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4600CA31.9% 484.1 / 45.3 355intergenic (+238/‑437)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (148/83);  new base A (35/73);  total (183/172)
Fisher's exact test for biased strand distribution p-value = 5.75e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 380 total aligned reads displayed.

TTTATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAAT  >  CP016816/202333‑202590
                                                                                                                               |                                                                                                                                     
tttATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTc                                                                                                                                       >  2:1830039/1‑128 (MQ=255)
tttATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTc                                                                                                                                       >  2:1860660/1‑128 (MQ=255)
  tattGATTAAAGTAAAAGTAGTTAAGTTAGTGTAAATAATAGAGTTAAGGTAAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTTcac                                                                                                                                     <  2:2086886/128‑1 (MQ=255)
  tataGATTAAAGT‑AAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTcaca                                                                                                                                    >  2:1097937/1‑128 (MQ=255)
    taGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACaa                                                                                                                                   <  2:1321900/128‑1 (MQ=255)
     agattttattaaaagtaGTTAAGTTAGTGTAAATAATAGTGTTAAGTTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACaaa                                                                                                                                  <  2:1675718/119‑1 (MQ=255)
        ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGTTTAATTAAAATACCATAAACTAAAAAATTCTTATAATGAAGATCCACAAAATCTATTAATATATATAAATATCTACACaaaa‑aa                                                                                                                              >  2:2441297/1‑128 (MQ=255)
        ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCATAACAAAT‑aa                                                                                                                              >  2:542497/1‑128 (MQ=255)
        ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑aa                                                                                                                              <  1:1245633/128‑1 (MQ=255)
        ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑aa                                                                                                                              <  2:20306/128‑1 (MQ=255)
        ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATACTTATAAATTAGATAAACGTGATCTATTTTTTTATTTATATATCTTAACaaaa‑aa                                                                                                                              >  2:431368/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGATTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATAATCTTTATCTATTTTATTATTTATTAATCTTCACAAAT‑aaa                                                                                                                             >  1:7923/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAATTTTAATTAAAATAACATAAACTAAATAATTATTATAATGTAGATAATCTTTATCTATTTATTTATATGTTTATATTCACAAAT‑aaa                                                                                                                             >  1:2452999/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTTATTATCTTCACAAAT‑aaa                                                                                                                             >  2:219332/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑aaa                                                                                                                             <  1:1074768/128‑1 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑aaa                                                                                                                             <  1:348157/128‑1 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑aaa                                                                                                                             >  2:2301398/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑aaa                                                                                                                             <  1:1322704/128‑1 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑aaa                                                                                                                             >  2:565947/1‑128 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAAAAACATAATAAATCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑taa                                                                                                                             <  2:716775/128‑1 (MQ=255)
         tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAAAATAAAAATAATAATAAATATAAAAAATATAATATTAATCTATTATATTATTTTATAATCTTAAAAAAT‑aaa                                                                                                                             >  1:2371727/1‑128 (MQ=255)
          aaagtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑aaaa                                                                                                                            <  1:546162/128‑1 (MQ=255)
           aagtaaaagtaGTGATTTTAGTGTAAATAATAGAGTTAAGGGTAAATAAAATACCATAAACTTAATAATTCTTATAATGTTGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑aaaaa                                                                                                                           <  2:86189/128‑1 (MQ=255)
             gtaaaagtaGTGAAGTTCGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑aaaaaaa                                                                                                                         <  1:1505028/128‑1 (MQ=255)
             gtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAAATCTTATAATGTAGATCCTCGTGATCTATTATTTTATATGTTTATCTTAACAAAT‑aaaaaaa                                                                                                                         >  1:2228833/1‑128 (MQ=255)
              taaaaatcGAGAAGTTTTTGTAAATAATAGATTTCATGGTAATTAAAAATCCATAAAATTAATAATTCATATAATTTAGATCCTAGTTATCTATTTTTTTATTTGTTTAACATCACAAAT‑aaaaaaa‑a                                                                                                                       <  1:1289208/128‑1 (MQ=255)
               aaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑aaaaaaa‑aa                                                                                                                      >  1:1897888/1‑128 (MQ=255)
                 aagtaGTGAATTTAGTTGAAATAAAAGTGTTAATGTTAATAAAAATACCATTAACTTAAAAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAAc                                                                                                                    <  1:2179516/128‑1 (MQ=255)
                   gtagtGAAGTAAGTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACaa                                                                                                                  <  1:1353894/128‑1 (MQ=255)
                    tattGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAAt                                                                                                                 <  1:902970/125‑1 (MQ=255)
                    tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGGGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAAt                                                                                                                 <  1:1010321/128‑1 (MQ=255)
                     agtGAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATc                                                                                                                <  1:1653535/128‑1 (MQ=255)
                     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATc                                                                                                                <  1:440271/128‑1 (MQ=255)
                     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCATTATCTATAATTTTATATTTTTATCTTAAAAAAT‑Aaaaaaa‑aaaaaaaa                                                                                                                >  2:519777/1‑126 (MQ=255)
                     agtGAAGTTAGTGTAAATAATAGAGTTAAGCTTAATTAAAATACCATAAACTTAATAATACTTAAAATGTAGATCCTCGTTCTCTATTTTTTTCTGTGTATATCTTCACTAAT‑AAAAAAA‑AAACAAta                                                                                                                >  2:2310511/1‑127 (MQ=255)
                      gtGCAGTTACTGTAAATAATAGAGTTAAGGTCAATTAAAATACCATAAACTTAATAATACTTAAAATGACGATCCTCATGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATcc                                                                                                               <  2:939233/128‑1 (MQ=255)
                      gtGAAGTTATTTTAAATAATAGATTTATTGTTTATTAATATACAATAAAATTAATAAATCTTATAATCAATATCATAGTTATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATcc                                                                                                               <  1:678837/128‑1 (MQ=255)
                       tGAATTTAGTGTAAATAATAGAGTTAAGGTTAATAAAAATACAATAAACTTAATAATTCTTATAATTTAGATCATAGAGATCTATTTTTTTATTTGTTAAACATCAAAAAA‑AAAAAAA‑AAAAAATcaa                                                                                                              >  2:2341030/1‑126 (MQ=255)
                       tGAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATccc                                                                                                              <  1:1742508/128‑1 (MQ=255)
                        gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATATATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACaaacacc                                                                                                             >  2:2352846/1‑123 (MQ=255)
                         aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCATCTTGATCTATATTTTTATTTATTTATATTAAAAAAT‑AAAAAAA‑AAAAAAtaaaat                                                                                                            >  2:1024430/1‑123 (MQ=255)
                          aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCCtt                                                                                                           <  1:1190467/128‑1 (MQ=255)
                          aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAAAATAAAATTAATAATTATTATAATTTATATCATAAAAATATAATTATTTATTTATTAATATAAACAAAA‑AAAAAAA‑AAAAAAtaaaaaa                                                                                                           >  2:1798415/1‑122 (MQ=255)
                           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCAtta                                                                                                          >  2:273870/1‑127 (MQ=255)
                           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAAACCCAtta                                                                                                          >  2:1284528/1‑127 (MQ=255)
                           gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCATCACAAAT‑AAATAAA‑AAACAAAACCCttt                                                                                                          >  2:2258780/1‑128 (MQ=255)
                            ttAGTGTAAAAAATAGAGATAAGGTTAATTAAAATACCATAAACTTAAAAATTCTTATAAAGTAGATCATCGTGATCAATATTTTTATTTGTATATCTTCACAAAT‑AAAAAAA‑AAAAAAtaaaattaa                                                                                                         >  2:1159980/1‑120 (MQ=255)
                             tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTATTTTTTAATATTCACAAAT‑Aaaaaaa‑aaaaaaaaaaaataaa                                                                                                        >  2:669925/1‑118 (MQ=255)
                              aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCTTTATCTATTTTTTTATTATTATATCTTCACAAAT‑Aaaaaaa‑aaaaaaaaaaataaaaa                                                                                                       >  2:1199052/1‑117 (MQ=255)
                              aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATTTATATACTAATAATCTATTTTTTTATATATATATATTAAAAAAT‑Aaaaaaa‑aaaaaaaaaaaaaaaaa                                                                                                       >  2:1452898/1‑117 (MQ=255)
                               gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAA‑AAAAAAA‑AAACaaacaaataaaaaa                                                                                                      >  2:606968/1‑116 (MQ=255)
                                tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCACttaaaaat                                                                                                     >  1:1953381/1‑122 (MQ=255)
                                tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCAACGTTATCTATTATTTTATTTATTTATCTTCACAAAT‑AAAAAAATAAACaaaaacataaaaaa                                                                                                      >  2:146878/1‑116 (MQ=255)
                                   aaaTAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATcccataaaaaattaa                                                                                                  >  1:2044010/1‑116 (MQ=255)
                                     ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAA‑AAACAAACACC‑‑Ttaaa‑aaataaaa                                                                                             >  1:2248177/1‑128 (MQ=255)
                                         taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAAT‑AAAAAAA‑CAACAATCCCC‑‑TTAAA‑AATTaataaaaa                                                                                         >  2:766982/1‑128 (MQ=255)
                                            agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCACC‑‑TTAAA‑AATTaaaaaaaaaaa                                                                                      >  2:2428433/1‑128 (MQ=255)
                                              ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAAAAAACAC‑‑‑ATAAA‑AAATtaaaaaaaaaaaaa                                                                                   >  1:1844153/1‑128 (MQ=255)
                                               tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaa                                                                                   >  2:2217290/1‑128 (MQ=255)
                                               tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAAACCAC‑‑TTAAA‑AATTaaaaaaaaaaaaaa                                                                                   >  2:2146318/1‑128 (MQ=255)
                                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                  >  1:2091427/1‑128 (MQ=255)
                                                aaGGTTAAATAAAATACCATAAACTAAAAAAATCATATAATGTATATCCTCATGATCAAATATTTAAAATGATTATCATAACAAAT‑AAAAAAA‑AAAAAAAAACC‑‑AAAAA‑AAATaaaaaaaaaaaaaaa                                                                                  >  2:1406122/1‑128 (MQ=255)
                                                  tgTTAATTAAAATTAAATAAAATTAATAAATCTTTTAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTAAAAAAT‑TAAAAAA‑AAAAAATACCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                <  2:1894497/127‑1 (MQ=255)
                                                  ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATAATCACAAAT‑AAAAAAA‑AAAAAATCAAATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaa                                                                               >  2:1137475/1‑128 (MQ=255)
                                                  ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAA‑AAACAATACCC‑‑‑TAAA‑AAATtaaaaaaaaaaaaaaaa                                                                                >  2:490589/1‑128 (MQ=255)
                                                  ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAA‑AAACAATAACC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                 >  2:1923518/1‑128 (MQ=255)
                                                  ggTTAATTAAAATA‑CATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAA‑AAACAAAAACCTaaaaaa‑aaaaaaaaaaaaaaaaaaaa                                                                                 >  1:259798/1‑128 (MQ=255)
                                                   gTTAATTAAAAATACAAAAAATAATAAATTATTATTATGTTTAACCTCTTGTTTTTTTTTTTTAATTGTTTATATTTACAAAA‑TAAAAAA‑AAAAAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                               <  1:2034919/128‑1 (MQ=255)
                                                     taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATACCCTT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                            >  1:598537/1‑128 (MQ=255)
                                                       attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTATTATATTTTTTTATCTTCAAAAAT‑AAAAAAA‑AAAAAAT‑‑AAAATAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaa                                                                           >  1:2423883/1‑127 (MQ=255)
                                                        ttaaAATAACAAAAAATTAAAAATTATTATAATTTATATACTCTTTATATATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAA‑AAAAAAACCCC‑‑TTAAA‑AAATaaaaaaaaaaaaaaaaaaaaaac                                                                          <  1:2058102/128‑3 (MQ=255)
                                                         taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAAACCC‑‑ATTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                         >  2:1993863/1‑125 (MQ=255)
                                                            aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                      >  2:1357437/1‑128 (MQ=255)
                                                            aaTACCATAAACTTAATAATTCTTATAATGTAAATACTCTTGATCAATTTTTTTATTTGTTTATCATCACAAAT‑AAAAAAA‑AAAAAAAAAAC‑‑TTAAA‑AATAAAAAAAAAAAAAAAAAAAAAAATaaaa                                                                      >  2:196257/1‑128 (MQ=255)
                                                              aacaaTAAAATTAATAATTATTAAAATTTATATCCTAGTGATCTATTTTTTTATTTGTTTATATTAAAAAAT‑AAAAAAA‑AAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                   <  1:1390544/124‑1 (MQ=255)
                                                              aaacaaaaaaataataaTTATTATAAATTATATACACTTGTTATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAA‑AAAAAAAACCCATT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                    <  1:1527878/117‑1 (MQ=255)
                                                                   tAAAATTAATAATTTTTAAAATTTTTAAACTCTTTTTATATTTTTTTTTTTTTTTTTATTAAAAAAA‑AAAAAAA‑AAAAAAAACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAAct                                                               <  2:575494/128‑1 (MQ=255)
                                                                            taatTATTATAATTTAGATACTCGTGATATATTTTTTTATTTGTTTATATTTACAAAA‑AAAAAAA‑AAACAATCACC‑ATAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                       <  1:2218186/128‑1 (MQ=255)
                                                                                             atccatgTGATATATTTTTTTATTTGTTTAACATCAAAAAT‑AAAAAAA‑AAACAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                     <  1:2307846/122‑1 (MQ=255)
                                                                                             ataatcttGATATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAA‑AAAAAATACCCATAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                       <  1:1138339/121‑1 (MQ=255)
                                                                                              tcatgtttttttATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAA‑AAAAAAACCC‑‑AATAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                    <  2:2043904/117‑1 (MQ=255)
                                                                                              tcatgttGATCTATTTTTTTATATTTATA‑CTTAAAAAAT‑AAAAAAA‑AAAAAATACCC‑‑ATAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCATAAAATTCCCTATTATACca                                   <  1:1620660/122‑1 (MQ=255)
                                                                                              tacacgttataaaTTTTTTTATTTTTTATTTTTAACAAAA‑AAAAAAA‑AAAAAATACCC‑‑‑AAAA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                   <  2:1224361/116‑1 (MQ=255)
                                                                                              tCCTCGTGATCTTTTTTTTTATTTTTTTATCATAAAAAAT‑AAAAAAA‑AAACAAACCCC‑‑ATAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                    <  1:2009425/128‑1 (MQ=255)
                                                                                                  tttgttatATTTTTTTAATTTTTTAAAATAAAAAAA‑AAAAAAA‑AAAAAAAACCCATAAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                  <  1:1275388/121‑1 (MQ=255)
                                                                                                  agttatttATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAATAA‑AAAAAATAACTTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAGTTCCCTATTATACca                                   <  1:2341030/121‑1 (MQ=255)
                                                                                                   gTGATATATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAAAAA‑AAAAAAACCCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                               <  1:301041/128‑1 (MQ=255)
                                                                                                       aatttttttttATTT‑TTTATATTAAAAAAA‑AAAAAAA‑AAAAAATACC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACACTATTTCTTAAAATTCCCTATTATACCACattttaaa                          <  1:694673/124‑3 (MQ=255)
                                                                                                          atttttttatttttttATATTAAAAAAA‑AAAAAAA‑AAAAAATACAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                        <  1:178845/128‑1 (MQ=255)
                                                                                                            ttttttttttttttATTTTTAAAAAA‑AAAAAAA‑AAAAAAAACC‑‑AATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                      <  2:2389801/128‑1 (MQ=255)
                                                                                                             ttttttttttttTATATTAAAATAA‑AAAAAAA‑AAAAAATCAAC‑TTAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAATCTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                      <  1:2290523/128‑1 (MQ=255)
                                                                                                             tttttATTTTTTTATATTAAAAAAA‑AAAAAAA‑AAAAAATACC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                     <  2:2371955/128‑1 (MQ=255)
                                                                                                               tttATTTTTTTATAATAAAAAAA‑AAAAAAA‑AAAAAAAACCC‑‑ATAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                  <  1:1965142/128‑1 (MQ=255)
                                                                                                                   ttttttTATATTAAAAAAA‑AAAAAAA‑AAAAAATCCAC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg               <  1:834938/128‑1 (MQ=255)
                                                                                                                   tttGTTTATCTTAACAAAA‑AAAAAAA‑AAAAAATCCCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAGAATTCCCTATTATACCACATCTTATTTTAAAAATaaa               <  1:661993/128‑2 (MQ=255)
                                                                                                                      gTTTATATTCTCAAAA‑AAAAAAA‑AAAAAATCACATTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa              <  1:1993863/128‑1 (MQ=255)
                                                                                                                       tttATATTAAAAAAT‑AAAAAAA‑AAAAAATCCCATT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt          <  1:1449226/128‑1 (MQ=255)
                                                                                                                         tATCTTCACAAAT‑AAAAAAA‑AAAAAATCCC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAAAATAATTTATAAAAATTACAAATAATAACACTTTTAATTATTAAAATatattatta         >  2:1587431/1‑120 (MQ=255)
                                                                                                                          aTCTTAAAAAAT‑AAAAAAA‑AAAAAATTACC‑‑TAAAA‑AATTTAAAAAAAAAAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa        <  1:1855217/128‑1 (MQ=255)
                                                                                                                              tCACAAAT‑‑AAAAAA‑AAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAATCTATTAATTAAAATTACATATTAAACAAAATTTTATTTTTAAATAATGTTATTAAaataat  >  1:2076379/1‑128 (MQ=255)
                                                                                                                               |                                                                                                                                     
TTTATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAA‑AAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAAT  >  CP016816/202333‑202590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑