Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2500T.56.5% 73.1 / inf 885intergenic (+214/‑328)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (222/146);  new base . (349/130);  total (577/308)
Fisher's exact test for biased strand distribution p-value = 1.57e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1089 total aligned reads displayed.

ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTA‑AAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377
                                                                                                                                  |                                                                                                                                
  aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCttt                                                                                                                                >  2:548035/1‑128 (MQ=255)
   atatTTAGTTACATTTATTTATCGCAATTTTTTGAATTAGTAATTAAATAAAAAATTTATATTTTTAGTTAATTTTTTTATATGA‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCattt                                                                                                                               <  1:2269845/128‑1 (MQ=255)
    tatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCttttt                                                                                                                              >  1:2022576/1‑128 (MQ=255)
     atTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGATCTTGTAAAAAATAGAtttttt                                                                                                                             >  1:1089559/1‑128 (MQ=255)
     atTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCtttttt                                                                                                                             >  2:2158405/1‑128 (MQ=255)
     atTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTAGAACTTGTAAAAAATATCtttttt                                                                                                                             >  1:2192933/1‑128 (MQ=255)
      tttAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCttttttt                                                                                                                            >  2:2217879/1‑128 (MQ=255)
      tttAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCttttttt                                                                                                                            >  2:1899616/1‑128 (MQ=255)
       ttAGTTTCATTAATTTATCGCACTTGTATGATTTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTTAACTTGTAAAAAATAGCtttttttt                                                                                                                           >  2:656895/1‑128 (MQ=255)
        tAGATTAATTAATTTATAGCACTTGTATGAATTATTAACAAAATAAAAATATTATCTTTTTAGATATTTTTTTTATATTC‑AAA‑TTTTT‑AAAAAATTAAATTGAACTTGTAAAAAAAAGCttttttttt                                                                                                                          <  1:1800715/128‑1 (MQ=255)
          gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttt                                                                                                                        >  1:91816/1‑128 (MQ=255)
          gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGA‑AAA‑TTATT‑AAAAAATTAATTTGAAATTGTAAAAAATATCttttttttttt                                                                                                                        >  1:1171886/1‑128 (MQ=255)
           tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCtttttatttttt                                                                                                                       >  2:140958/1‑128 (MQ=255)
             tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttt                                                                                                                     >  1:1740361/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttt                                                                                                                   >  2:2264744/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATAC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATATCtatttttttttttatt                                                                                                                   >  2:1583366/1‑128 (MQ=255)
                ttAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGAttttttttttttatttt                                                                                                                  >  1:1662522/1‑128 (MQ=255)
                  aaTTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttttta                                                                                                                >  1:567099/1‑127 (MQ=255)
                  aaTTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttttat                                                                                                                >  1:1440208/1‑126 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttataatg                                                                                                              >  2:1626423/1‑122 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttatttttttttaaa                                                                                                              >  2:515107/1‑125 (MQ=255)
                     ttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttttaaaa                                                                                                             >  2:1054845/1‑124 (MQ=255)
                       aTCTCACTTTTTTTAATTACTTATAAAATAAAACAATTATATTTTTATATATTTTTTTTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTTAACATGTAAAAAATAGCTTTTTTTTTTTTTTTTtataatgg                                                                                                           <  1:41842/128‑5 (MQ=255)
                        tctctattGTTTTAATTATTTAGAAAATATAAATATTATTTTTTTATATTTTTTTTTTATATTC‑TAA‑TTTTT‑TAAAAATTTATTTTAAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATgg                                                                                                         <  1:2437885/122‑1 (MQ=255)
                        tctcaattttATTAATAATTAATAAAATAAAAATATTATCTTTTTATATATTTTTTTTAAATTC‑AAA‑TTTTT‑AAAAAATTAATTTTAAATTTTAAAAAAAAGC‑TTTTTTTTTTTTTTTTTTATAATgg                                                                                                         <  1:321901/119‑1 (MQ=255)
                        tCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTATTTTTTTTTtataaatta                                                                                                          >  1:1204324/1‑123 (MQ=255)
                        tCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTCTATATGA‑AAA‑TTTTT‑AAAAAATTAAATTGAACTTGTAAAAAATATAttttttttttttttttaataatata                                                                                                          >  1:2209345/1‑119 (MQ=255)
                         cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTttattaattaaa                                                                                                         >  2:1471092/1‑122 (MQ=255)
                              ttGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTATTTTaatatgtatatat                                                                                                    >  2:934402/1‑119 (MQ=255)
                                  attaaTTTGTAAGAAAATAAAAATATTATATTTTTAGATATTTTTTGTATATTC‑AAA‑TTTTT‑AAAAAATTAATTTTAACTTGTAAAAAAAA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                              <  2:881259/125‑1 (MQ=255)
                                   tGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTA‑AATTTAAATATAAAttt                                                                                             >  1:1537938/1‑128 (MQ=255)
                                    ttaatAGTAAACAACAAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTTTACTTGTAAAAAAAACCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                              <  2:1972340/124‑1 (MQ=255)
                                     atttAGTCATAAACTTAAACTATTTATTTTTTAGATTTTTTTTGTTTATGC‑AAT‑TTTTT‑AAAAATTTTAATTGAACTTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAg                                                                                          <  1:1299598/126‑1 (MQ=255)
                                        tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATTGAAATTTAAATTTTAg                                                                                          >  2:1126143/1‑128 (MQ=255)
                                        tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGTAAATATAAATTTTAgt                                                                                         >  2:2008065/1‑127 (MQ=255)
                                        tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATTAATAttttttg                                                                                         >  2:193430/1‑125 (MQ=255)
                                        atgtaattaaataaaaaaaTTATATTTTTTTTTATTTTTTTTTTATTG‑AAA‑TTTTT‑AAAAAATTAATTTTAACTTTTAAAAAATA‑CCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAgg                                                                                         <  2:2286834/117‑1 (MQ=255)
                                         atttaataaataaaaataTTATTTTTTTTTATATTTTTTTTATATTT‑AAA‑TTTTT‑AAAAAAATAATTTTAAATTGTAAAAAAAACCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAgg                                                                                         <  1:1973878/118‑1 (MQ=255)
                                          ataataaATTAAAAAAATTATTTTTTTTTATTTTTTTTTTATATTT‑AAA‑TTTTT‑AAAAAATTAATTTTTAATTTTTAAAAATATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTa                                                                                       <  2:1173499/127‑1 (MQ=255)
                                              gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATATTTAAAATAAAAATTTTattttttt                                                                                    >  1:239941/1‑121 (MQ=255)
                                              gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCTATTTTTTTTTTTTTATTTA‑ATTTGAAATATTAAttttttggttttt                                                                                   >  2:1549796/1‑119 (MQ=255)
                                               aaactaaaactaTTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑T‑ATTTAATTATAAATTTTATGTAtttttt                                                                                 >  1:71629/1‑126 (MQ=255)
                                                aactaaaactaTTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTAAAATTTAAATTTTATGAATtttttt                                                                                >  1:1248621/1‑128 (MQ=255)
                                                aactaaaactaTTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTA‑AAT‑GAAATATAAATTTTATGTtttttttttt                                                                              >  2:2382358/1‑126 (MQ=255)
                                                 actaaaactaTTATCTTTTTAGATATTATTTGTATATGC‑AAA‑TATTT‑AAAAAATTAATTTGAACTTGTAATAAATATC‑TTTTTTTTTTTTTATTTTATAATTATAATATATTTTATATATAtttttat                                                                                >  1:351647/1‑125 (MQ=255)
                                                  ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTAATTttgttg                                                                               >  1:1877751/1‑128 (MQ=255)
                                                   taaaactaTTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATATTTGAAATATAAATTTTAGTTATTttgtttt                                                                              >  1:2310079/1‑126 (MQ=255)
                                                     aaactaTTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTTAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTAAAATATAAATTTTATGTATTTTTTTTTCt                                                                            >  1:595577/1‑128 (MQ=255)
                                                     aaactaTTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGTTATttttttttat                                                                            >  2:368715/1‑124 (MQ=255)
                                                      aactaTTTACTTTTTAGTTATTTTTTGTTTTTGT‑AAA‑TTTTT‑AAAAAATTAATTTGAAATTGTAAAAAAAAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                          <  1:821860/128‑1 (MQ=255)
                                                      aaatattatCTTTTTAGATATTTTTTTTATATTC‑AAA‑ATTTT‑AAAAAAATAATTTTAACTTTTAAAAAATAGC‑GTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                           <  1:2358464/125‑1 (MQ=255)
                                                      aaagataatagttttAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTATTAT‑‑T‑GAAATATAAATTTTATTTTTTTTGTTTTATAAg                                                                         >  2:1272903/12‑128 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTAAT‑ATTTAAATATTAATTTAAGTTATttttttttatatttata                                                                     >  2:262718/1‑117 (MQ=255)
                                                            tatCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTATTTTTTTTTATAATtatata                                                                   >  1:1147473/1‑128 (MQ=255)
                                                                  tttAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTAGTAAAAAATAGCTTTTTTTTTTTTTTTTTAT‑TTAT‑AAAATATAAATTTAAGGTATATTTTTTTATAA‑TATACaaaaaa‑a                                                            >  2:778794/1‑128 (MQ=255)
                                                                   ttAGATATTTTTTGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTGTAAATATAAATTTTTTGTTTTTTGTTTTCTAATTATAaaaaaaa‑a                                                            >  2:1879111/1‑128 (MQ=255)
                                                                      ttttttttttttATATTT‑AAA‑ATTTT‑TAAAAAATAATTTTTAATTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAg                                                         <  1:2155485/124‑1 (MQ=255)
                                                                       tttttttttttttATGC‑AAATTTTTA‑AAAAAATTATTTTTAA‑TTTTAAAAAAT‑TTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAg                                                         <  1:193208/125‑1 (MQ=255)
                                                                       ttatTTTTTTTTTATTCAAAA‑TTTTA‑AAAATATT‑ATTTTAAATTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGa                                                        <  1:139732/127‑1 (MQ=255)
                                                                       attttttttttAT‑TGA‑AAT‑TTTTT‑AAAAATTTATTTTTAAATTTTAAAAAA‑ATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGaa                                                       <  2:183567/125‑1 (MQ=255)
                                                                        tatTTTTTGTATATTC‑AAA‑TTTTA‑AAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTATTTTATTTA‑AATAAAAATTAAAATTTAATGAATTTTATAGTCAAAGTAACTaaaaaa‑aaata                                                        >  2:2113525/1‑124 (MQ=255)
                                                                         atTTTTTTTATTTGT‑AAT‑TTTTT‑AAAAAATTAATTTTTAATTTTAAAAAATA‑‑‑TATTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAg                                                     <  1:1016414/128‑1 (MQ=255)
                                                                          ttttttGTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTATTTTTTTTTTTTTATAATTTTAaaaaaaa‑aaaaaaaaa                                                    >  1:169587/1‑126 (MQ=255)
                                                                              ttttttttattaaa‑TTTTATAAAAAAATAATTTTAAATT‑TAAAAAAAATCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAgg                                                    <  2:690529/117‑1 (MQ=255)
                                                                               tttatatttaaaa‑TTTTT‑AAAAATTTATTTTTAATTTTTAAAAAA‑ATC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGaaa                                                 <  2:314653/118‑1 (MQ=255)
                                                                                gTATATGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGCAAATATAAATTTTAGTTATTTTGTTGTATAATTATATAAAAAA‑ATAGAAAGGaaaa                                                >  1:1899736/1‑128 (MQ=255)
                                                                                  atatGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTAGTTATTTTTTTTTATATGTATAAAAAAAA‑ATAGAAAGGaaaaaa                                              >  1:977565/1‑128 (MQ=255)
                                                                                   tatGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATTTAAATATAAATTTTATGTTTTTTTTTTTATAATTATATAAAAAA‑ATAAAAAGAAAAAAat                                             >  2:597824/1‑128 (MQ=255)
                                                                                    atGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTTTTTTGTTTTATAAGTATATAAAAAA‑ATATAAATGAAAAAattt                                           >  1:884586/1‑126 (MQ=255)
                                                                                     tGC‑AAA‑TTTTT‑AAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAATTATAAATTTTAGTTTTTTTGTTTAATAAGTATATAAAAAA‑ATAGAAAGTAAATAatat                                           >  1:2234283/1‑128 (MQ=255)
                                                                                     attcata‑TTTTT‑TAAAAATTATTTATAAATTTTAAAAAATTTC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAata                                            <  1:2465385/122‑1 (MQ=255)
                                                                                        aaaa‑TTTTT‑AAA‑AATTAATTTTAAAATGTAAAAAATA‑‑‑TCATTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAATATTGTTa                                      <  1:63703/127‑1 (MQ=255)
                                                                                         ata‑TTTTT‑AAA‑AAATAATTTTTAATTGTTAAAAATA‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAATATTGtt                                       <  2:1361108/126‑1 (MQ=255)
                                                                                           a‑TTTTA‑AAAAAATAAATTT‑ATCATTTAAAAAA‑ATTTTATTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAATATTGTTaa                                     <  2:2422501/128‑1 (MQ=255)
                                                                                              tttA‑TAAAAATTAATTTTAAATTTTATAACATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAATATTGTTaaa                                    <  1:297518/128‑1 (MQ=255)
                                                                                                  taaaaaaTTAATTTTAAATTTTAAAAAATA‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAATATTGTTAAAAGt                                 <  2:810229/127‑1 (MQ=255)
                                                                                                   aaaaaaTTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGTAATTAAAAATTTAATGTTTTTTTTTTTATAAGTTTATAAAAAA‑AAATAAATGAAAAATTTTTTTTTAAAGTa                                >  2:2456307/1‑128 (MQ=255)
                                                                                                    aaaaattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATATTGGAAATATAAATTTTAGGTTTTTTGTTTAATATGTATGAAAAAAA‑ATAAAAAGGAAAAAATATTGTTAAAATTaa                               >  2:176320/4‑128 (MQ=255)
                                                                                                     aaaattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATTGAAATTTAATTTTTAGGTTTTTTTTTGTATAATTTTATAAAAAA‑ATTAAAAGTAAAAAAATTTGTTAAAAGTaa                               >  1:1571796/3‑128 (MQ=255)
                                                                                                      aaattaattTTAAATTTTTAAAAAT‑TTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAATATTGTTAAAAGTAATa                             <  1:209137/127‑1 (MQ=255)
                                                                                                       aattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATGTAATTATAAATTTTAGTTATTTTTTTTTATAATAATATAAAAAA‑AAAAAAAGAAAAAAATTTTTTTaaatttataaat                           >  1:4930/1‑119 (MQ=255)
                                                                                                       aattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAAATTGTAATATAAATTTTTGGTATTTTTTTTGCAAAATATAAAAAAAA‑AAACAAATGAAAAAATATATATAAAAATAAAAca                           >  2:2320031/1‑127 (MQ=255)
                                                                                                        attaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATATTGAAAATATAATTTTTTGTTTTTTTTTTTTATAATTTTATAAAAAA‑ATTAAAAGTAAAAAATTTTTTTaaatttataata                           >  1:775558/1‑119 (MQ=255)
                                                                                                        attaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATGGAAATATAATTTTTAGGTTTTTTTTTGTCAAATTTAAAAAAAAA‑ATAGAAATGAAAAATATTTTTTAAAATTAATaaa                           >  2:1302607/1‑126 (MQ=255)
                                                                                                         ttaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATTGTAATATAAATTTTTGGTTTTTTGTGTGATATGTTACTAAAAAA‑ATGTAATGGAAAAAAATTTTTTTAAAGTATTACTa                          >  1:523963/1‑128 (MQ=255)
                                                                                                         ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTAGGTTTTTTTTTTTCTAATTATATAAAAAA‑ATAAAAAGTAAAAAATATTTTTATAATtaataataa                         >  2:462953/1‑128 (MQ=255)
                                                                                                         ttaattTGAACTTGTAAAAAATAG‑ATTTTTTTTTTTTTTTTTTAAAAAGTAAATATAAATTATAGATATTTTGTTTTCTAATTATATATAAAA‑ATATAAAATAAAAAATATTTTTAAAAGaaaaaata                          >  2:849169/1‑123 (MQ=255)
                                                                                                          taattTTATATTTTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAATATTGTTAAAAGTAATACTaaa                        <  2:169576/128‑1 (MQ=255)
                                                                                                            attTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGGAAATATAAATTTTAGTTTTTTTTTTTTATAAGTAAATAAAAAATATA‑AAAATAAAAAATTTTTTTAAAATTAATAaaaaaa                       >  2:2058099/1‑128 (MQ=255)
                                                                                                              ttGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTTGGTATTTTGTTGTTTATGTATAAAAAAAA‑ATAAAAAGGAAAAAAATTTGTTAAAAGTAAAACTTAAatt                     >  1:132842/1‑128 (MQ=255)
                                                                                                              ttGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTTTGTATTTTTTTGTAAAATTATATAAAAAA‑ATATAAATTAAAAAATATTTTTAAAATTAATAATAAAatta                    >  1:847854/1‑128 (MQ=255)
                                                                                                                  aCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTATTTTTTTGTATAATTATATAAAAAA‑ATATAAAGTAAAAAATTTTTTTAAAATTAATAATAAAATTATTTa                >  1:1481805/1‑128 (MQ=255)
                                                                                                                      ttttataatatttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt              <  2:420755/116‑1 (MQ=255)
                                                                                                                      gTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATGTAAATAAAAATTTTATTTATTTTTTTTTATAATTATATAAAAAA‑TTATAAATGAAAAAATATTTTTAAAATTTATAATAAAattattatatt             >  1:737907/1‑123 (MQ=255)
                                                                                                                       tttaaaaaatttttttttttttttttttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg             <  1:451947/117‑1 (MQ=255)
                                                                                                                       tAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTATTTTTTTTTATAATTATAAAAAAAA‑AAAAAAAGTAAAAAAAATTTTTAAAAGTAAAAAAAAAATTATTTatttt            >  2:1238697/1‑124 (MQ=255)
                                                                                                                       tAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGAAAATATAAATTTTTGTTATTTTTTTGTATAAGTATATAAAAAA‑ATATAAAGTAAAAAATATTTTTAAAATTATAAAAAAAATTATATAAttt            >  1:1608029/1‑126 (MQ=255)
                                                                                                                          aaaaTAGCTTTTTTTTTTTTTTTTTTTATATTGTAAATATAATTTTTTTGTTTTTTGTTGTATTTGTATATAAAAAA‑TTATAAAGAAAAAAATTTTTTTAAATGTAATTCTAAAATTTttttatttta          >  1:669193/1‑128 (MQ=255)
                                                                                                                           aaaTAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTTTTTTGTTGTCTAATTATATAAAAAA‑ATTGAAAGGAAAAAATATTTTTAAAATTATTACAAAAATTAtttaattttaat        >  2:500503/1‑128 (MQ=255)
                                                                                                                           aaaTAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAACATAAATTTTATGTATTTTGTTTTCTAAGTTTATAAAAAA‑ATAGAATGGAAAAAATATTGTTAATATTAATACTAAAATTATTTAATGtttat        >  1:2040761/1‑128 (MQ=255)
                                                                                                                                  |                                                                                                                                
ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGC‑AAA‑TTTTA‑AAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAA‑ATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑