Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9520CA34.2% 1326.5 / 176.4 852intergenic (+336/+122)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (249/291);  new base A (208/73);  total (463/389)
Fisher's exact test for biased strand distribution p-value = 1.42e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 881 total aligned reads displayed.

GCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203826‑204079
                                                                                                                                    |                                                                                                                               
   ttttttttttgCTTTTTATTATATTTTTCAAAATTACAACGTTTTCATAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATTAAAGTAAGA‑TTTGGATCAACCAAAACTATATCaaa                                                                                                                              <  2:2979678/118‑1 (MQ=255)
    ttttttttgtttttttATTATTATTATAAAATTTTAAACTCTTTTAATTTTTATTTTTTTTGTTGT‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCaaaaa                                                                                                                            <  2:380743/117‑1 (MQ=255)
    attttatttgttttttATTTTAATTTTAAAAATTTAAAAGCTTTCAAATTTTTTTTTTTTGGCTTGTT‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCaaa                                                                                                                              <  1:2924760/117‑1 (MQ=255)
    aTGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAAGA‑TTTGTATAAACCAAAAATATATAaaaa                                                                                                                             >  2:1097583/1‑128 (MQ=255)
     tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAATA‑TTTGGATAAACCAAAAATATATCaaaaaa                                                                                                                           >  2:2739578/1‑128 (MQ=255)
       ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTGTAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTGT‑TCATATAAAAGTTGGA‑GTAGGACGAACCAACACTACATGaaatata                                                                                                                          >  1:2296332/1‑124 (MQ=255)
        catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTT‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAATTATTA‑TTTGGATAAACAAAAAATATATCaaaaaa                                                                                                                           >  2:2419070/3‑128 (MQ=255)
        catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAATTAATA‑TTTGTTTCAACCAAAACTATATAAAAAAAAtt                                                                                                                        >  2:1303362/3‑128 (MQ=255)
         cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAAGA‑TTTTGATCACAAAAAAATAAATAAAAAAAATTa                                                                                                                       >  2:3017715/1‑128 (MQ=255)
             ttttttttttATATTTATAAAAATTAAAAAGTTTTAAAATTGTTTTTTTTTTGTTTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTaaaa                                                                                                                    <  1:3067975/126‑1 (MQ=255)
                ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAATA‑TTTTGATAAACCAAAAATATATCAAAAAAATTaaaaaa                                                                                                                  >  2:120765/1‑128 (MQ=255)
                ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAATTAAGA‑TTTGGTTAAACCAAAACTATATAAAAAAATTTaaaaaaa                                                                                                                 >  2:2303966/1‑128 (MQ=255)
                      tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATAAAAA‑TTTTTAAAACCAAAAAAAATttaaaaaaaattaaaaaaaaaaatt                                                                                                           >  2:165880/1‑123 (MQ=255)
                        taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAAATAAGA‑TTTTGATCAACAAAAAATATATAAAAAAAATTAAAAAAAAaatttta                                                                                                         >  2:1949522/1‑128 (MQ=255)
                         aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAATA‑TTTGTCTGACCCAACACTTTATACAAAAAATTTATAAAAAtagtttag                                                                                                        >  1:1055499/1‑128 (MQ=255)
                           ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTTTTTTT‑T‑AAAAAAAAAAATAAAATTTTGGTAAAACCAAAAAATAAACAAAAAAATAAAAAAAAAaatttttgtta                                                                                                     >  1:1094554/1‑127 (MQ=255)
                            ttttaaaaTTAAAACTATTTAAAATTGTTTTTTTTTGGATTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTg                                                                                                     <  2:803387/121‑1 (MQ=255)
                            tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAAAAAAGTAAAA‑TTTGGATCAACCAAAAAAATAAAAAAAAAATTAAAAAAAAtaattatttt                                                                                                      >  1:78615/1‑123 (MQ=255)
                              tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATATAAT‑TTTTGAACAACCAAAAAAATAAAAAAAAAATTAAAAAAAATAATTTTGTTGAGt                                                                                                  >  1:2096753/1‑128 (MQ=255)
                                   attaaaaatattttAAATTTTATTTTTTATGTTTT‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCaa                                                                                             <  2:2667923/118‑1 (MQ=255)
                                    ttACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑‑TTTTTTTTTTTTTTTTTT‑AAAAAAAAAATTAATA‑TTTGTAAAACAAAAAAATATAAAAAAAAATATAAAAAAAATATTTTATTTAAttttaa                                                                                              >  1:2956238/1‑126 (MQ=255)
                                           gCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTTTTTTT‑T‑AAAAATAAAATTAAAT‑TTTGGATCAACAAAAAATATATAAAAAAAATTAAAAAAAAAATTTTTTTTTAATTTAAAAtagtaata                                                                                    >  1:811749/1‑121 (MQ=255)
                                             tttattgtttttttttttGGTTTTT‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatat                                                                                   <  1:3119351/116‑1 (MQ=255)
                                             tttCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAAAAAAAGTAAGA‑TTTGGAAAAAACAAAAATATATAAAAAAAAATAAAAAAAATAAATTTATTAAGTTTCAAAACTGctaa                                                                                    >  2:1499378/1‑125 (MQ=255)
                                              ttCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTAAGTTTCAAATATGCatat                                                                                   >  2:53419/1‑128 (MQ=255)
                                               tCAAAGTGTATTTTTTAGGCTTGTT‑‑TTTTTTTTTTTTTTTTGT‑AAAAAAAAAAGTAAGA‑TTTTGATAAACCAAAAATTAATAAAAAAAATTAAAAAAAATATTTTATTTTAATTTAAAATATTCatat                                                                                   >  2:1152444/1‑128 (MQ=255)
                                                  aagttttatttttAGTGTTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATTAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                                                                               <  1:1725424/120‑1 (MQ=255)
                                                   aGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAATTAAGA‑TTTGGATACACCAAAAAAATATCAAAAAAATTAAATAAAATAGTTTTTTTTATATTAAAATCTGCAATTATAGt                                                                              >  2:1709037/1‑128 (MQ=255)
                                                      gtATTTTTTAGGCTTGTTTTTTTTTTTTTTTTTTTTTT‑AAAAAAAAAAATAAAA‑TTTTTATAAACCAAAAAAATTTGAAAAAAATTAAAAAAAAAAGTTTATTTATTTTTCTAAAATACAtatataat                                                                              >  2:1054777/1‑126 (MQ=255)
                                                      gtATTTTTTAGGCTTGTTT‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAATTAATA‑TTTGGATAAACCAAAAATATTAAAAAAAAATTAAAAAAAAAATTTTATTTTATTTTAAAATCAGCATATATATTa                                                                             >  2:415283/1‑128 (MQ=255)
                                                      gtATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGA‑TTTGTGTCAACCAAACCTATTTAAAAAAAATTAAAAAAAAATGTTTAGTTTAGTTTCAAAACTGCataaaatttaca                                                                           >  2:654815/1‑119 (MQ=255)
                                                       tATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAAGTAATA‑TTTGGATCAACCAAAAATATATAAAAAAAAATAAAAAAAATAGTTTATTTGAGTTTCAAATATGCTAATAAAGTAaaaa                                                                         >  1:72771/1‑128 (MQ=255)
                                                         ttttttTGTTTTT‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAgg                                                                       <  1:3285708/128‑1 (MQ=255)
                                                          tttttAGGCTTG‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAATAAAATTAATA‑TTTGGTTAACCCAAAAATTTATAAAATAAATTAAAAAAAATATTTTTTTTAATTTTAAAATATTCATATATATTAAAAAgt                                                                       >  2:2501294/1‑127 (MQ=255)
                                                           ttttAGGCTTGTT‑‑TTTTTTTTTTTTTTTTTT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACAAAAACAAAAAAATTAAAAAAAAAATTTTTTTTTAGTTTCAAATATGCAATTATAGAACaaaaa                                                                       >  1:2531694/1‑126 (MQ=255)
                                                             ttAGGCTTGT‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAATA‑TTTGGTTAAACAAAAAATTTATAAAAAAAATTAAAAAAAATATTTTTTTTTAGTTTAAAATATGAATATTTATTAAAAAGTAAt                                                                    >  2:482546/1‑128 (MQ=255)
                                                                  tgttttttttttttttttttttttGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                                  <  2:2894333/120‑1 (MQ=255)
                                                                    tttttttttttttttttttttttt‑AAAATTTAAAGTAAGA‑TTTGTATCAACCAAAACTATATCTAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  2:854466/122‑1 (MQ=255)
                                                                    ttttttttttttttttttttttGT‑AAAAATAATATTAATA‑TTTTTATAAAATAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTTATTTTCAAATATGCATATATAGTACAAAGGAATTTAt                                                                <  1:1965571/122‑1 (MQ=255)
                                                                    ttttttttttttttttttttttGT‑AAAAATAAAAGTTAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  2:922481/122‑1 (MQ=255)
                                                                    ttttttttttttttttttttttGT‑AAAAATAAAAGTAAGT‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  2:2527319/122‑1 (MQ=255)
                                                                     ttgttttttttttttttttttGT‑TAAAAAAAAATTAAAA‑TATGGAACAACCAAAACTAAATAAAAAAAATTAAAAAAAATATTTTATTTGAGTTTCAAAACAGCATATATATTACAAAAGAATTTAtt                                                               >  2:626224/6‑127 (MQ=255)
                                                                      ttttttttttttttttttttGT‑AAAAATAAAAGTAAGA‑TTTGTATCAACTAAATCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa                                                              <  2:2781151/124‑1 (MQ=255)
                                                                           tttttttttttttttGT‑AAAAATAAAATTAAGA‑TTTGGATCAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                         <  2:3196861/128‑1 (MQ=255)
                                                                            ttttttttttttttGT‑AATAATAAAAGTAATA‑TTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                                        <  2:2131197/128‑1 (MQ=255)
                                                                            ttttttttttttttGT‑AAATATAAAAGTATGA‑TTTGGATAAAAAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                                        <  1:535608/128‑1 (MQ=255)
                                                                            ttttttttttttttGT‑AAAAATAAAAGTTAGA‑TTTGGATCAAACAAAAATTTATAAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                                        <  1:1660081/128‑1 (MQ=255)
                                                                             tttttttttttttGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCTAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaa                                                       <  1:2695621/128‑1 (MQ=255)
                                                                               tttttttttttGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa                                                     <  1:2634151/128‑1 (MQ=255)
                                                                                   ttttttttt‑tAAAATAAAAGTTATT‑TTTTGATTAAACAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                                                 <  1:3231467/128‑1 (MQ=255)
                                                                                   tttttttGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGAAATTTATGATAGAAAAAAATgg                                                 <  1:2850167/128‑1 (MQ=255)
                                                                                    tttttttt‑AAAAAAAAAAGTAAGA‑TTTGGATAAACAAAAAATATAACAAAAAAATTAAAAAAAATAATTTATTTTATTTAAAAATATGAATATTATTTAAAAATGAATTTATTATAGAAAAAAATgta                                                >  1:3023537/1‑126 (MQ=255)
                                                                                    ttttttGT‑AAAAATAAAAGTAAGA‑TTTGGTTCAACCAAAAATATTTAAAAAAAATTAAAAAAAATATTTTTGTTGATTTTAAAATATGAATATATTGTAAAAATGAATTTATTATAGAAAAAAATgta                                                >  2:322706/1‑126 (MQ=255)
                                                                                     ttttttT‑AAAAATAAAAGTAAGA‑TTTTGATCAATCATAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                               <  2:3297654/128‑1 (MQ=255)
                                                                                     tttttGT‑AAAAATATAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                               <  2:2844718/128‑1 (MQ=255)
                                                                                     tttttGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                               <  1:418267/128‑1 (MQ=255)
                                                                                     tttttGT‑AAAAATAAAAGTAAGA‑TTTGGATAAACCTAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                               <  1:1182864/128‑1 (MQ=255)
                                                                                       tttGT‑TAAAATAAAAGTAAGA‑TTTGTATCAAACTAAACTATATCAAAAAATTTAAAAATAATAGTTTAGTTGAGTTTCTAATCTGCATATATAGTACAAAGGAATTTATGAGAGAAAAAAATGGATTa                                             <  2:270460/128‑1 (MQ=255)
                                                                                       tttGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                                             <  1:2744048/128‑1 (MQ=255)
                                                                                        ttGT‑AAAAATAAAATTAAGA‑TTTGTATCAAAAAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                            <  1:246859/128‑2 (MQ=255)
                                                                                         tGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG‑AAAAAATGGATTAGtt                                          <  2:1747247/128‑1 (MQ=255)
                                                                                          gT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca                                          <  2:334850/128‑4 (MQ=255)
                                                                                          gT‑AAAAATAAAAGTAAGA‑TTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca                                          <  1:2664572/128‑4 (MQ=255)
                                                                                           t‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaa                                         <  1:1128385/128‑5 (MQ=255)
                                                                                            ttaaaaTTAATGTAAGA‑TTTGGATCAAACAAAACTATATCTAAAAAATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaa                                         <  1:1836633/126‑5 (MQ=255)
                                                                                                   aaaaGTAAGA‑TTTGGATAAAACAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  1:910680/128‑1 (MQ=255)
                                                                                                   aaaaGTAAGA‑TTTGGATAAAAAAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  1:2218846/128‑1 (MQ=255)
                                                                                                     aaGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                >  2:1811475/1‑128 (MQ=255)
                                                                                                        tAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                             <  2:3063923/128‑1 (MQ=255)
                                                                                                         aata‑TTTTGATTAATTAAAATTATATAAAAAAAATTAAAAAAAATATTTTATTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATTATAGAAAAAAATGGATTAGTTGATAATCCAttttt                            <  1:33306/125‑1 (MQ=255)
                                                                                                         aata‑TTTGGATCAATCAAATTTATATCAAAAAAATT‑AAAAAAATATTTTAGTTGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTATCAACTAATCCAtttttt                           <  1:1518682/125‑1 (MQ=37)
                                                                                                         aaGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAATAATGGATTAGTTGATAATCCAttttt                            >  1:1694832/1‑128 (MQ=255)
                                                                                                          aGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                         >  2:2602403/1‑98 (MQ=255)
                                                                                                          aGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                           >  1:2377327/1‑128 (MQ=255)
                                                                                                          aGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                           >  2:204/1‑128 (MQ=255)
                                                                                                           gA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          >  2:1630045/1‑128 (MQ=255)
                                                                                                           gA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          >  1:1781619/1‑128 (MQ=255)
                                                                                                           gA‑TTTGGATCAAAAAATACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          <  1:652285/128‑1 (MQ=255)
                                                                                                            a‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTTATAATCCATTTTTTaa                         >  1:975558/1‑128 (MQ=255)
                                                                                                            a‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa                         >  2:2202621/1‑128 (MQ=255)
                                                                                                            a‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTATaa                         >  2:3136465/1‑128 (MQ=255)
                                                                                                              tttGGATGAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTTGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt                        <  2:3246009/128‑1 (MQ=255)
                                                                                                              tttGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt                        <  1:2576729/128‑1 (MQ=255)
                                                                                                                tGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAtttt                      >  1:1337899/1‑128 (MQ=255)
                                                                                                                 ggATCAAAAAAAACTATATCAAAAAAATTAAATAAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtttt                     <  1:1905173/128‑1 (MQ=255)
                                                                                                                  gATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg                    >  1:2784566/1‑128 (MQ=255)
                                                                                                                    tCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGtt                  >  2:77482/1‑128 (MQ=255)
                                                                                                                       aCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTACGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat               >  2:1575947/1‑128 (MQ=255)
                                                                                                                          aaaaCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            <  1:869377/128‑1 (MQ=255)
                                                                                                                           aaaCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGTATTAGTTGATAATcc                                  <  2:188228/105‑1 (MQ=255)
                                                                                                                           aaaCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa           <  1:1431118/128‑1 (MQ=255)
                                                                                                                           aaaCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa           >  2:2942419/1‑128 (MQ=255)
                                                                                                                           aaaCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa           >  1:1004183/1‑128 (MQ=255)
                                                                                                                            aaCTATATCAAAAAAATTAAATAAAATAGTTTAGTTGAGTATCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAATAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAat          <  1:3188880/128‑1 (MQ=255)
                                                                                                                               tataTCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattat       <  1:299082/128‑1 (MQ=255)
                                                                                                                                atatCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt      <  2:2561571/128‑1 (MQ=255)
                                                                                                                                 tatTAATAAAATTAAAAATATTATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAAttatta     <  1:2031243/128‑1 (MQ=255)
                                                                                                                                 tatCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGTATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAatttata     >  1:1588715/1‑124 (MQ=255)
                                                                                                                                   tCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAg   >  1:1256304/1‑128 (MQ=255)
                                                                                                                                   tCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAg   >  2:1398521/1‑128 (MQ=255)
                                                                                                                                    |                                                                                                                               
GCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTTTTTTTGT‑AAAAATAAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203826‑204079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑