Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8951.T61.3% 1078.7 / inf 551intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (112/101);  new base T (269/68);  total (382/169)
Fisher's exact test for biased strand distribution p-value = 3.32e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 666 total aligned reads displayed.

TTTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAT  >  CP016816/203767‑204017
                                                                                                                                        |                                                                                                                                
 tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑g                                                                                                                                   >  2:2858613/1‑128 (MQ=255)
 tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑A‑TT‑g                                                                                                                                   >  2:901755/1‑128 (MQ=255)
 tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTATCAAAGTGTA‑GTTTTTA‑GG‑‑‑C‑TT‑g                                                                                                                                   >  2:2104124/1‑128 (MQ=255)
  ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑t                                                                                                                               >  2:2218846/1‑128 (MQ=255)
      ttttttttAT‑AAAAAAAATTAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑ttt                                                                                                                         >  2:1766827/1‑128 (MQ=255)
      ttttttttA‑AAAAAAAAATTAAAATTTTTCATTTAAAGCCTTTTGTAAAAAAGCCTATGTTCTAGGATTTTTATTATACTTATAAAAATTACAACGCTTTCAAAGTTTA‑TTTTGTA‑GG‑‑‑C‑TT‑G‑‑‑tgt‑tat                                                                                                                         >  2:139304/1‑126 (MQ=255)
       tttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTTTAAAAAATCCTATGTTCTAGGCTTTTTATTATAAATATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑ttt                                                                                                                         <  2:3081765/128‑1 (MQ=255)
           tttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑ttttttt                                                                                                                     >  1:3206399/1‑128 (MQ=255)
           tttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTAGTAAAAAAGCCTATGTTCTAGGCTTTTTATAATACTTATCAAAATTACAACTCTTTCAAAGTGTA‑TATTTAA‑AG‑‑‑C‑TA‑G‑‑‑ttt‑ttttttt                                                                                                                     >  1:208495/1‑128 (MQ=255)
           tttATAAAAAAAAATAAAAAATTTTAATATAAACCCCATTTTAAAAAATCCTATGTTCTATGGTTTTTATTATAAATATAAACATTACAACCCTTTAAAACTGTA‑ATTTTTA‑GG‑‑‑C‑Tt‑t‑‑‑ttt‑ttttttt                                                                                                                     <  2:2163239/128‑1 (MQ=255)
            ttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTCGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑tttttttt                                                                                                                    >  2:1864110/1‑128 (MQ=255)
              tataaaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCATATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑tttttttttt                                                                                                                  >  1:356441/4‑128 (MQ=255)
                aaaaaaaaaTAAAAATTTTTCATTTAAATCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAACTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑tttttttttt‑tt                                                                                                               <  2:1184485/128‑1 (MQ=255)
                   aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑tttttttttt‑ttttt                                                                                                            >  2:3129666/1‑126 (MQ=255)
                   aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑tttttttttt‑ttttg                                                                                                            >  2:3237781/1‑126 (MQ=255)
                   aaaaaaTAAAAATTTTTAATTTAAACCCATTTTTAAAAAAGCCTATTTTCTAGGCTTTTTATTATAATTTTCAAAATTAAAACGCTTTAAAATTTTA‑TTTTTTA‑GG‑‑‑G‑TT‑G‑‑‑ttt‑tttttttttt‑ttttt                                                                                                            <  1:190056/128‑3 (MQ=255)
                    aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑tttttttttt‑tttttt                                                                                                           >  2:2728371/1‑125 (MQ=255)
                    aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑tttttttttt‑tttttt                                                                                                           >  1:2562579/1‑125 (MQ=255)
                      aaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAATGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑tttttttttt‑ttttttaa                                                                                                         >  1:2898660/1‑123 (MQ=255)
                        ataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GC‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTaaaa                                                                                                        >  1:773572/1‑128 (MQ=255)
                          taaaatTTTTTATTTAAAACAATTTGTAAAAAATGATATGTTCAAGGCTTTTTATTATACTAATCAACATTACAACGCTTTCAAATTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑ttt‑tttttttttt‑tttttgtaaaaa                                                                                                     <  1:2607542/127‑10 (MQ=255)
                          aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GT‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAAt                                                                                                      >  1:389158/1‑128 (MQ=255)
                          aaaaatTTTT‑ATTTAATTCCATTTTTTAAAAACTATTTTTTATTGTCTTTTTTTTTTAAATATAAAAATTTCAACGCGTTCAAACTTTT‑TTTTTTA‑TG‑‑‑G‑Tt‑t‑‑‑ttt‑tttttttttt‑ttttttgtaaaaa                                                                                                    <  1:990419/128‑11 (MQ=255)
                          aaaaatTTTT‑ATTTAAAGCCAATTGTAAAAAACCCTATTGTATATGCTTTTTATTATAATTATCAAAAATAAAACGCTTTCAAATTGTA‑TTTTTTT‑TG‑‑‑G‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATa                                                                                                     <  1:3250819/128‑1 (MQ=255)
                           aacttttttCATTTAAAGCCATATTTAAAAATTTCTATTTTTTTGTCTTTTTATTATACTTATTAACATTACAACGCTTTCAAAGTGTA‑TTTTTTT‑TG‑‑‑G‑TT‑G‑‑‑TTTATTTTTTTTTT‑TTTGTAAAAATa                                                                                                     <  2:1612400/124‑1 (MQ=255)
                           aaaatTTTTTATTTAAATTTATTTTTATAAAATAATTTGTTATTTTTTTTTTTTTATAATTATTAAAATTAAAAATTTTTTAATGTTTATTTTTTTT‑TG‑‑‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATa                                                                                                     <  1:177585/128‑1 (MQ=255)
                           aaaatTTTTTAATTAAACCCATTTTTAAAAAATCCATTGTTATATGCTTTTTATTTTAAATATAAAAATTACAACCCTTTCAAACTTTT‑TTTTTTAGGG‑‑‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATa                                                                                                     <  2:2616980/128‑1 (MQ=255)
                           aaaatTTTTCATTTAAACCCATTTTTAAAAAAACCTATTTTTATGGCTTTTTTTTATAATTTACAAAATTACAAACTTTTTAATTTGTT‑TTTTTTT‑TG‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTT‑TTTGTAAAAAt                                                                                                      <  1:245619/128‑1 (MQ=255)
                           aaaatTTTTCATTAAAAGCCAATTGTAAAACAGCCTATGTTCTAGGCTTTTTATTATACTTATCAAAATTACAACGCATTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATa                                                                                                     <  2:1245262/128‑1 (MQ=255)
                            aaatTTTTTTTTTTAATAAATTTTTATAAAGTCCTATTGTTTTGGTTTTTTTTTATAATTATCAACTTATAAAAGGTTTAAAATTGTT‑TTTTTTT‑GGGT‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATa                                                                                                     <  1:3285055/128‑1 (MQ=255)
                             tatTTTTCATTTAAACCAATTTGTAATAAAGACTATGTTCTTGGTTTTTTATTATTCTTATCAAAATTAAAACTCTTTCAAATTTTA‑TTTCTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATaaa                                                                                                   <  2:1066677/127‑1 (MQ=255)
                             aatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTTTACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATaaaa                                                                                                  >  2:2454054/1‑128 (MQ=255)
                             aatTTTTATTTTAAATCCATTTTTAAAAACCCCTTTTTTCTAGGCTTTTTATTATAATTATAAACAAAACAACGCTTTAAAATTTTA‑TTTTTTA‑GG‑‑‑G‑TT‑GTT‑TTT‑TTTTTTTTTT‑TTTGTAAAAATaa                                                                                                    <  1:3076642/128‑1 (MQ=255)
                               tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTATAAAAATAAAAGt                                                                                                >  2:482417/1‑128 (MQ=255)
                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTT‑TTTGTTAAAATAAAAg                                                                                                 >  2:1122188/1‑128 (MQ=255)
                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATaaaata                                                                                                >  2:2992060/1‑126 (MQ=255)
                                 ttttATTTAAATTCATTTTTAAAAAAGAATATGTTATATTGTTTTTATTATACTTATAAAAATTAAAACGCTTTCAAAGTGTT‑TTTTTTA‑TG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTa                                                                                               <  1:1524944/128‑1 (MQ=255)
                                 tttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAAAAAAAGTa                                                                                               >  1:2724573/1‑128 (MQ=255)
                                  ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TTCT‑‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAATTaa                                                                                              >  1:1207727/1‑128 (MQ=255)
                                     aTTTAAATCCATTTTTAAAAAATCCTATTTTCTATGCTTTTTATTATAATTATCAACATTACAACGCATTCAAAGTGTA‑TTTTTTA‑GG‑‑‑CTTT‑T‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGAt                                                                                           <  2:3316020/128‑1 (MQ=255)
                                     aTTTAAAGTCATTTGTATAAAAGCTAATGTTCTATGTATTTTATTATACTAATCAACATTAAAACGCTTTCAAAGTGTA‑TTTTTTT‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGAtt                                                                                          <  1:2987020/128‑1 (MQ=255)
                                      tttAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTTTTAAAAAAAAAATTAAAttt                                                                                         >  1:881725/1‑128 (MQ=255)
                                       tttaattaaTTTTTAAAAATTCCTATGTTTTATTATTTTTATTATAATTATAAACATTACAACGCTTTCAAATTGTT‑TTTTTTA‑TG‑‑‑C‑‑‑‑‑‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑t                                                                                    <  1:1981640/120‑1 (MQ=255)
                                       ttAAATCCATTTGTAAAAAAGACTTTTTTTTTTGTTTTTTATTATAATTATAAACATTAAAACGCTTTAAAATTGTA‑TTTTTTT‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGAttt                                                                                         <  1:1095355/128‑1 (MQ=255)
                                        tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTT‑TAAAAATAAAAGTAAGATTTTGa                                                                                      >  2:1939406/1‑128 (MQ=255)
                                          aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GT‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTATAAAAAAAAAATAAATAttttaa                                                                                      >  1:2536582/1‑125 (MQ=255)
                                           aGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GT‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAATTAAGTTTTGGa                                                                                      >  2:776055/1‑128 (MQ=255)
                                           aGCAATTTTTAAAATAGCCTATGTTTTTTGTTTTTTATTATAATTTTAAAAATTAAAACGCTTTAAATTTTTT‑TTTTTTA‑GGGT‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGa                                                                                      <  1:927540/128‑1 (MQ=255)
                                           aGCAATTTGTAAAAAAGCAGATTTAATAGGCTTTTTATTATAATTATCAACATTACAACTCTTTCAAAGTTTA‑TTTTTTA‑TG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑t                                                                                    <  1:2923877/128‑1 (MQ=255)
                                            gtcATTTGTAAAAAATCATATGTTCTAGGCTTTTTATTATACTTATCAAAATTACAACTCTTTCAAAGTGTA‑TTTTTTA‑TG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCa                                                                                  <  2:2640357/126‑1 (MQ=255)
                                            gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAAATAATAttttatta                                                                                    >  2:535608/1‑123 (MQ=255)
                                              cATTTGTAAAAAAGCCTATGTTATCGGGTTTTTATTATACTTATCAACCTTACAACCGTTTCAAAGTGTA‑TTTTTTT‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCA‑Ac                                                                               <  1:227363/128‑1 (MQ=255)
                                                ttttttaaaaaTCTTATTTTTTTGGATTTTTATTATAATTATAAACATTAAAACGTATTAAAATTGTT‑TTTTTTA‑GGGTTT‑TT‑T‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCa‑a                                                                                <  1:233348/122‑1 (MQ=255)
                                                   gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAATTAATATTTGGA‑TCA‑ACCaaaa                                                                          >  2:69146/1‑128 (MQ=255)
                                                    tAAAAAATCCTTTGGTTTAGGTTTTTTATTATAATTATCAACATTAAAACGCTTTAAAATTGTT‑TTTTTTT‑TG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCA‑ACCAAAAc                                                                         <  1:3124660/128‑1 (MQ=255)
                                                     aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTTAAAATAAAATTTATATTTGGATTCA‑ACAaaaa                                                                          >  1:282977/1‑128 (MQ=255)
                                                     aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTGAAAATCTAATAGAATGATTTGGA‑TCA‑ACaaatcat                                                                        >  1:2156642/1‑124 (MQ=255)
                                                           gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAAAAAAATTAATATTTGTA‑TAA‑ACCAAAAAtaaaaa                                                                   >  1:811236/1‑124 (MQ=255)
                                                           gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTTGT‑TAA‑AACAAAACTATTTc                                                                   >  2:2571626/1‑128 (MQ=255)
                                                               attttttttgCTTTTTATTATTTTTAATAAAATTATAATGTTTTTAATTTTTA‑TTTTTTA‑TG‑‑‑T‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGT‑TCA‑ACCAAAACTATATCaaaaa                                                              <  1:2638780/119‑1 (MQ=255)
                                                                 ttattAGTCTTTTTTTTATATTTATTAAAATTTCAACTTTTTTTAATTTTT‑TTTTTTT‑TG‑‑‑T‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCA‑ACCAAAACTATATCaaaaaaa                                                            <  1:1158371/124‑1 (MQ=255)
                                                                   tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATTAAATTTATTTTTTGA‑TAA‑ACCAATACTAAATCAAAAAAAt                                                           >  2:319667/1‑128 (MQ=255)
                                                                   catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAAAAAATGTAAG‑TTTGGA‑AGACACCAAAAGAATTACaaaaaatt                                                           >  2:1673192/3‑126 (MQ=255)
                                                                   catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAATTAATATTTGTT‑TCA‑ACCAAAACTATATAAAAAAAAtt                                                          >  2:1303362/3‑128 (MQ=255)
                                                                    atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAAGTAATATTTGGA‑ACA‑ACCAAAACTATATCAAAAAAATTa                                                         >  2:1158371/2‑128 (MQ=255)
                                                                      aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAATTAAAATTAAGATTTGGA‑TCA‑ACCAAAACTATTTAAAAAAAtttta                                                        >  1:3307777/1‑126 (MQ=255)
                                                                       ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAAGTAATATTTGGA‑AAA‑ACCAAAAAAAAATCAAAAAAAATaaa                                                       >  2:2920904/1‑128 (MQ=255)
                                                                        tcTTTTTTTTATAAATATAAAAATTAAAACTTTTTAAAATTTTA‑TTTTTTATGT‑‑‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCA‑ACCAAAACTATATCAAAAAAATTaaaa                                                      <  1:2519504/127‑1 (MQ=255)
                                                                         cTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAAAAAAAATAATATTTTTT‑TCA‑ACAAAAAATAAAAAAAAAAAAATaaaaa                                                     >  2:2680349/1‑128 (MQ=255)
                                                                           ttttttttTAATTATTAACATTAAAAATTTTTAAAATTTTT‑TTTTTTT‑GG‑‑‑CTTT‑T‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCA‑ACCAAAACTATATCAAAAAAATTaaaaaaa                                                   <  2:2754331/128‑1 (MQ=255)
                                                                           ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAATTAAAATTTTGA‑TAA‑ACCAAAAAAATATAAAAAAAATTaaaaaaaa                                                  >  2:2833140/1‑128 (MQ=255)
                                                                                  ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTTAAAATAAAATTAAAATTTGTA‑TCA‑ACCAAAAATATATAAAAAAAATTAAAAAAAAaaattt                                            >  1:2968002/1‑128 (MQ=255)
                                                                                    aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAATTAATATTTGTC‑TGA‑CCCAACACTTTATACAAAAAATTTATAAAAAtagtttag                                          >  1:1055499/1‑128 (MQ=255)
                                                                                    aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAAAAAAATTAAGATTTTTT‑ACA‑ACCAAAAATAAAACAAAAAAAATaaaaaaaaatatttat                                          >  1:302107/1‑120 (MQ=255)
                                                                                        aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTTATTTTTAAAAATAAAATAAAAATTTGAA‑TAA‑ACAAAAAATATAAAAAAAAAATTAAAAAAAAaattttatattt                                      >  2:809765/1‑123 (MQ=255)
                                                                                          cAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTT‑TTTTTAAAAAAAAAAATAAAATTTTTA‑AAA‑ACCAAAAATTAATAAAAAAAATTAAAAAAAAtattttattttat                                     >  1:1605980/1‑125 (MQ=255)
                                                                                              aTTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTT‑TTTTTAAAAAAAAAAATAAAATTTTTA‑TAA‑ACCAAAAATATATAAAAAAAATTAAAAAAAAAattttattttatttta                                 >  2:2364197/1‑127 (MQ=255)
                                                                                                tACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTT‑TTTTTAAAAAAAAAATTAAAATTTTGA‑AAA‑ACCAAAAATATATAAAAAAAATAAAAAAAAAATGTTTAGTTgtatttaaa                               >  1:1143313/1‑120 (MQ=255)
                                                                                                tACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAATTTATATTTTGA‑TAA‑ACAAAAAAAATATAAAAAAAATTAAAAAAAAtatttttgttttttttaaaa                              >  1:2779054/1‑118 (MQ=255)
                                                                                                tACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAAAATAAATTTTGT‑TCA‑AACAAATCAATATAAAAAAAATATAAAAAATtaatttaatttatttataat                              >  1:673224/1‑118 (MQ=255)
                                                                                                tACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAATTAAAATTTTTA‑TCA‑AACAAAAATATATAAAAAAAATTAAAAAAAAaattttattttatattaaaa                              >  2:169726/1‑118 (MQ=255)
                                                                                                tACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAATAATATTTGGA‑TCA‑AACAAAAATATATCAAAAAAATTAAAAAAAAAATTTTAGTTTAATTTaaaa                              >  2:104076/1‑128 (MQ=255)
                                                                                                 aCAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAAGTAAATTTTGGA‑TCA‑ACCAAAAATATATAAAAAAAATTAAAAAAAAAAATTTATTTTATTTTaaaaa                             >  2:1495531/1‑127 (MQ=255)
                                                                                                    aCGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAAGTAAGATTTGGA‑TAA‑ACCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTTTTTGAGTTTCAAAtattc                         >  2:3277912/1‑124 (MQ=255)
                                                                                                      gCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAAGTAATATTTTGA‑TAA‑ACCAAAAAAATATCAAAAAAATTAAAAAAAAAATTTTATTTTATTTTaaaaaaagaa                        >  1:2671965/1‑122 (MQ=255)
                                                                                                         ttCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAAAAAAATTAATATTTTGT‑TAA‑AACAAAAATATATGAAAAAAATTAAAAAAAAAATTTTATTTAATATTAAAATATGCaaat                     >  2:1556589/1‑128 (MQ=255)
                                                                                                          tCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAATATTTGGA‑AAA‑ACCAAAACAATAAAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATGAGCaaata                    >  1:1724953/1‑128 (MQ=255)
                                                                                                          tCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTTGA‑TCA‑ACCAAAAATATATCAAAAAAATTAAAAAAAATAGTTTATTTTATTTTCAAATATGCatata                    >  2:2015971/1‑128 (MQ=255)
                                                                                                           cAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAAGTAATATTTTGA‑TAA‑ACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTTTTTGAGTTTAAAATATgaaatata                   >  2:2718278/1‑121 (MQ=255)
                                                                                                            aatgtgtT‑TTTTTTT‑GG‑‑‑C‑TT‑‑‑‑‑TTT‑TTTATTTTTT‑TTTGTAAAAATAATAGTAAGATTTGGA‑TCA‑TCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTGCAAATCTGCATATATAGt                <  2:2542233/125‑1 (MQ=255)
                                                                                                             atttgtT‑TTTTTTA‑TG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                 <  2:2967781/125‑1 (MQ=255)
                                                                                                                tgtatttttttT‑GT‑‑‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc              <  1:2693973/123‑1 (MQ=255)
                                                                                                                 gtA‑TTTTTTA‑GG‑‑‑C‑TT‑GTTTTTT‑TTTTTTTTTT‑TTTTTAAAAATAAAATTAATATTTGGA‑TAA‑ACCAAAAATATTAAAAAAAAATTAAAAAAAAAATTTTATTTTATTTTAAAATCAGCATATATATTa               >  2:415283/1‑128 (MQ=255)
                                                                                                                 gtA‑TTTTTTA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAATTAAGATTTGGT‑TCA‑ACCAAAACTATATAAAAAAAATTAAAAAAAAAAGTTTTTTTTAGTTTAAAATGTGCAAATATATTaaa             >  1:1674792/1‑126 (MQ=255)
                                                                                                                  tttttttttT‑GA‑‑‑T‑TT‑T‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaa            <  1:829617/125‑1 (MQ=255)
                                                                                                                     ttttttA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAAGTAATATTTGGA‑TAA‑ACCAAAAATATATAAAAAAAATTAAAAAAATTATTTTAGTTTATTTTCAAAAATGCATATTAATTACAAAg          >  2:2329040/1‑128 (MQ=255)
                                                                                                                       ttttA‑GG‑‑‑C‑TT‑GTT‑TTT‑TTTTTTTTTT‑TTTTTAAAAATAAAATTAAGATTTGGA‑TCA‑ACCAAAAATTTTTAAAAAAAATTAAAAAAAATTGTTTTTTTTATTTAAAAATATGAAAATATAGTAaaaatg         >  2:378890/1‑126 (MQ=255)
                                                                                                                        tttA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAAAAAAAGTAAGATTTGGA‑TAA‑ACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTATTTTAGTTTAAAAAATTAATATATAGTAAAAAGTAAt      >  2:2486469/1‑128 (MQ=255)
                                                                                                                        tttA‑GG‑‑‑C‑TT‑G‑‑‑‑TT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAAAATTTTAGTTAAGTTTAAAAACTGAAATAAAAGTAAAAAGGAAtt     >  2:629911/1‑128 (MQ=255)
                                                                                                                          tA‑GG‑‑‑C‑TT‑GT‑‑TTT‑TTTTTTTTTT‑TTTGAAAAAAAAAAATTAAGATTTGGA‑TAA‑ACCAAAAAAAAATAAAAAAAATAAAAAAAAATAGTTTATTTAATTTACAAAAATGCATATAAATTAAAAAAGaaat     >  2:3032325/1‑126 (MQ=255)
                                                                                                                                        |                                                                                                                                
TTTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑C‑TT‑G‑‑‑TTT‑TTTTTTTTTT‑TTTGTAAAAATAAAAGTAAGATTTGGA‑TCA‑ACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAT  >  CP016816/203767‑204017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑