Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2500T.59.9% 413.4 / inf 1059intergenic (+214/‑328)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (214/191);  new base . (460/146);  total (679/380)
Fisher's exact test for biased strand distribution p-value = 4.46e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1317 total aligned reads displayed.

ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377
                                                                                                                                 |                                                                                                                                
ataataTTTAGATTCATTACATGATCGCACATGTCTTCATTAGTTAGAAACTAACACTATTATCTTTTTAGAAATTTTTTGTATA‑TGCAAATTTTTAAAAAAATAATTTGAACTTGTAAAAAAAAGC‑t                                                                                                                                  <  1:3146144/128‑1 (MQ=255)
 taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTAGTATA‑TGCAAATTTTTAAAAAATTAATATTAACTTGTAAAAAATAGC‑tt                                                                                                                                 >  2:1377224/1‑128 (MQ=255)
  aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTATTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATATC‑tat                                                                                                                                >  2:428091/1‑126 (MQ=255)
   atatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTATAAAATAGC‑tttt                                                                                                                               >  2:328768/1‑128 (MQ=255)
      tttAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑ttttttt                                                                                                                            >  2:1187263/1‑128 (MQ=255)
         atttttcttAATTTATCGCACTTTTAAGAATTATTAAGAAAAAAAAAATATTATCTTTTTATATATTTTTTGTATA‑TGCAAATTTTTAAAAAAATAATTTTAACTTGTAAAAAATAGC‑tttttttttt                                                                                                                         <  2:3144030/121‑1 (MQ=255)
          gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTATTTTGAAATTTTAAAAAATAGC‑ttttttttttt                                                                                                                        >  1:2259433/1‑128 (MQ=255)
           tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATATGTACTTGTTAAAAATAGC‑tttttttttttt                                                                                                                       >  1:2948037/1‑128 (MQ=255)
           gatCATTAATTTATCGCACTTGTATGAATTATTAAGAAACTAAAAATATTATCTTTTTATATATTTTTTGTATA‑TGCAAATTTTTAAAAAATAAATTTGAAATTGTAAAAAAAAGC‑tttttttttttt                                                                                                                       <  1:3101554/126‑1 (MQ=255)
             tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑tttttttttttttt                                                                                                                     >  2:2948221/1‑128 (MQ=255)
              cATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTTTA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGA‑ttttttttttttttt                                                                                                                    >  2:2665537/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑tttttttttttttttt                                                                                                                   >  1:1083551/1‑128 (MQ=255)
                  aaTTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑tttttttttttttttttta                                                                                                                >  2:1729155/1‑127 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑ttttttttttttttttttata                                                                                                              >  2:700802/1‑125 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑ttttttatttttttttttata                                                                                                              >  1:1742617/1‑125 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTtat                                                                                                              >  2:2799742/1‑128 (MQ=255)
                        tCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAAttt                                                                                                         >  1:1246903/1‑126 (MQ=255)
                         cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑tttttttttttttttaataataaaat                                                                                                         >  2:736441/1‑117 (MQ=255)
                         cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTGa                                                                                                        >  1:252574/1‑128 (MQ=255)
                               tgttttaatttttAAGAAACTAAAAATATTTTATTTTTATAAATTTTTTTTATA‑TTCAAATTTTTAAAAAATTAATTTTTACTTTTTAAAAAAAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAAta‑ta                                                                                                 <  2:1063699/116‑1 (MQ=255)
                                 tctGAAATACTAACTAACAAAAACTTATATATTTTTATCTTAGTTTTGTAAA‑TGCAAAATTTTAAAAAATTAATTTGTCAATGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑Taa                                                                                                <  1:230291/126‑1 (MQ=255)
                                  atttattattAATAAAATAAAAATATATTCTTTTTTTATTTTTTTTGTATA‑TTCAAATTTTTTAAAAATTAATTTTATATTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAAtt                                                                                             <  1:1454775/124‑1 (MQ=255)
                                   tttattattAATAAACTTAAACTATTTTTTTTTTATATTTTTTTTTTTTA‑TTAAAATTTTTAAAAAATTAATTTGTAATTTTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAAtt                                                                                             <  2:2558490/125‑1 (MQ=255)
                                     aaTTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTTTAATTTAAATA‑TAAtttt                                                                                            >  1:1936739/1‑128 (MQ=255)
                                     aaTTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAATGGAAATT‑AATAtttt                                                                                           >  1:3270040/1‑128 (MQ=255)
                                      aTTACTAATAAAAAAAAAAAATTATATTTTTATATATTTTTTTTATA‑AGCAAAATTTTAAAAAATTTATTTTTAATTTTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTa                                                                                          <  2:353447/128‑1 (MQ=255)
                                       ttAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATTTAAATA‑TAAATTTTa                                                                                          >  2:942783/1‑128 (MQ=255)
                                       ttAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTAAAATATAAAAA‑TAATATTTa                                                                                          >  2:1543011/1‑128 (MQ=255)
                                       ttAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAATGAAAATA‑TAAAattaat                                                                                         >  1:180364/1‑125 (MQ=255)
                                        tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAG‑‑ATTTTTTTTTTTTTTTTTTATAATGTAAATA‑TAAAttttttt                                                                                        >  2:772099/1‑125 (MQ=255)
                                         attaataaACTAAAACTATTAACTTTTATTATATTTTTTTTATA‑TTCAAATTTTTAAAAAATTAATTTGTACTTGTAAAAAATTG‑‑GTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGt                                                                                       <  2:1805143/126‑1 (MQ=255)
                                         attaataaAATAAAAATATTATATTTTTATTTATTTTTTTTAAA‑TTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATTTC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGt                                                                                       <  1:772973/126‑1 (MQ=255)
                                          gTAATAAAATAAAAATATTATATTTTTAGTTTTTTTTTTTATA‑TGCAAATTTTTAAAAATTTAATTTGAACTTTTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTa                                                                                      <  2:3056131/128‑1 (MQ=255)
                                           ttataaaataaaaataTTATTTTTTTTTTTTTTTTTTTTATA‑TTTAAATTTTTAAAAAATTTATTTTTAATTTTAAAAAATA‑T‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTAt                                                                                     <  2:1309178/124‑1 (MQ=255)
                                           taataaAATAAAAATTTTTTTTTTTTTTATATTTTTTTTTTA‑TTTAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAATATCTTTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGt                                                                                       <  2:2097047/128‑1 (MQ=255)
                                            aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATTATTGAAAATT‑TATATTTTattaat                                                                                     >  1:1552977/1‑123 (MQ=255)
                                            aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTTAAATA‑TAAATTTtatttatt                                                                                    >  1:1309178/1‑128 (MQ=255)
                                              ttaaataaaaattTTATTTTTTTTTTTATTTTTTTTTTA‑TTTAAATTTTTTAAAAATTAATTTTTAATTTTTAAAAATA‑T‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTAtttt                                                                                  <  1:8232/123‑1 (MQ=255)
                                              gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAATAATTGAATTA‑TAAATTTTATTTAtttt                                                                                  >  2:859892/1‑128 (MQ=255)
                                               aaactaaaactaTTATCTTTTTAGATATTTTTTGTATA‑TGAAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATC‑TTTTTTTTTTTTTTTTTATA‑ATAAGAAATA‑TATAATTTAGATAttttt                                                                                 >  1:2028548/1‑127 (MQ=255)
                                                 actaaaactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGATATT‑TAAATTTTATTTATTttgttg                                                                              >  1:138143/1‑128 (MQ=255)
                                                 actaaaactaTTATCTTTTTAGATATTTTTTCTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTT‑TAATTTAAATA‑TAAATTTTATTTATTttgtt                                                                               >  2:249370/1‑128 (MQ=255)
                                                    aaaactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATA‑TAAATTTAAGGTATTTttttgtga                                                                           >  1:402164/1‑126 (MQ=255)
                                                     aaactaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTTAATTA‑AAAATTTAAGttttttttttttat                                                                           >  2:530914/1‑124 (MQ=255)
                                                        atattatTTTTTTTTATATTTTTTTTTTA‑TTATAATTTTTTAAAAAATATTTTTAAAATTTTAAAAATA‑T‑ATTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAg                                                                        <  2:791356/127‑1 (MQ=255)
                                                         tattatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATATTGGAAATA‑TAAATTTTTTGTATTTTGTTTTCTaataa                                                                      >  1:2172281/1‑125 (MQ=255)
                                                          tttatTTTTTTATTTATTTTTTTTATT‑TTTAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATTGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                     <  2:3193734/127‑1 (MQ=255)
                                                          attatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATATTGGAAATT‑AAAATTTTAGGTTTTTTTTTGTATAAGTa                                                                      >  1:2674218/1‑128 (MQ=255)
                                                          attatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGtt                                                                      >  2:629087/1‑127 (MQ=255)
                                                          attatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATTGAAATA‑TAAATTTTAGTTATTTTTTTGTATAATTAta                                                                    >  1:2103542/1‑127 (MQ=255)
                                                           ttttatttttATATATTTTTTTTTTA‑TTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                     <  1:52980/123‑1 (MQ=255)
                                                           ttatTTTTTTTTATATTTTTTTTTTATTGAATATTTTTAAA‑AATTAATTTTTAATTTTTAAAAATATC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTa                                                                      <  2:3093166/128‑1 (MQ=255)
                                                           ttatTTTTTTATATATTTTTTTTATA‑TGCAAATTTTTAAAAAAATTATTTTAACTTTTTAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                    <  2:2899051/128‑1 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATATAAATA‑TAAATTTTATTTATtttttttaataattata                                                                    >  2:3008900/1‑117 (MQ=255)
                                                            tttttttttATATATTTTTTGTTAA‑TTAAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                    <  2:236579/124‑1 (MQ=255)
                                                            tatttttttattttttTTTTTTTTT‑TGAAAATTTTTTAAAAATTTATTTTAAATTTTTTAAAATA‑T‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATc                                                                    <  2:2255205/128‑1 (MQ=255)
                                                            tatCTTTTTTGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGTTATTTTGTTTTATAATTATc                                                                    >  2:112539/1‑128 (MQ=255)
                                                                tttattatatttttttttATA‑TG‑AAATTTTTAAAAAAATAAATTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaa                                                              <  1:3212590/118‑1 (MQ=255)
                                                                   ttttattttttttttttt‑tGAAAATTTTTAAAAAATTAATTTGAAATTTTAAAAAATA‑‑‑TGTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                            <  2:148613/121‑1 (MQ=255)
                                                                   ttAGATATTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTT‑TAATTTAAATA‑TAATTTTTTCTTTTTTTTTTTTATAATTATataaataa                                                             >  1:2393529/1‑128 (MQ=255)
                                                                      tatatTTTTTTTTAT‑TTCAAATTTTTAAAAAATTTATTTTAACTTTTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa                                                          <  2:2761103/127‑1 (MQ=255)
                                                                       atatTTTTTGTATA‑TTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                         <  2:3240441/128‑1 (MQ=255)
                                                                       atatTTTTTGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAATTAAAATA‑TAATTTTTTGTTTTTTTTTTTTTTAATTAAAAAAAAAAATaa                                                         >  1:2834005/1‑127 (MQ=255)
                                                                           tttttGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTATAAAATAGC‑‑‑TTTTTTTTTTTTTTTATAAAATGTAAATA‑TAATTTTAAGGTATTTTTTTTTATAATTAGATAAAAAAATATATAgg                                                    >  2:2700541/1‑128 (MQ=255)
                                                                           tttttGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATA‑TAAATTTTATGTATTATTTTGTATAATTATATAaaaaaaaaaaaat                                                     >  2:582682/1‑127 (MQ=255)
                                                                           tttttGTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAATTA‑TAAATTTTAGTTATTTTGTTTTATAAGAATAAAAAAAAATAGAAAgg                                                    >  1:3012962/1‑128 (MQ=255)
                                                                               tGTTTA‑TGTAAATTTTTAAAAAAATTATTTTAAATTTTTAAAAATA‑T‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                 <  1:1664744/128‑1 (MQ=255)
                                                                                tttttattaaaaTTTTTATAAATTTATTTTTAAATTTTAAAAAATA‑T‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                 <  2:1643478/119‑1 (MQ=255)
                                                                                gTATA‑TGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATATAAAAAAATTGAAAGGaaaaaa                                              >  1:1851901/1‑128 (MQ=255)
                                                                                  tttatttaaaTTTTTAAAAAATTAATTTTTAATTTTAAAAAAT‑TT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaaa                                               <  1:1119768/121‑1 (MQ=255)
                                                                                  ata‑tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATA‑AAAATTTTTGGTTTTTTGTTTTATAATTTTCTAAAAAAAAAAAAATGAAAAAat                                             >  1:3058454/1‑128 (MQ=255)
                                                                                   ttatttaaaTTTTTAAAAAATTAATTTTTAATTGTTAAAAATTG‑‑‑ATTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                             <  2:215754/122‑1 (MQ=255)
                                                                                   ta‑tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTTGTTTTTTTGTTTTGTAAGTATAAAAAAAAATATAAAGaaaaaatt                                             >  1:2710127/1‑126 (MQ=255)
                                                                                    tatttaaaTTTTTAAAAAATTTATTTTTAATTTTTAAAAAT‑TT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                             <  1:61068/123‑1 (MQ=255)
                                                                                    a‑tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTTTTTTTTTGTATAATTATATAAAAAAATATAAAGTAAAAAatt                                            >  2:1888140/1‑127 (MQ=255)
                                                                                        taaaTTTTTAAAAAATTAATTTTAAATTTTAAAAAATTTC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATAtt                                          <  2:2853493/127‑1 (MQ=255)
                                                                                            ttttTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGAAAATA‑TAAATTTTATTTATTTTTTTTTATAATTATAAAAAAAAAAAAAAAATAAAAAATATTTTTaa                                     >  1:2801207/1‑128 (MQ=255)
                                                                                                    aaattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTTTAATGGATTTT‑AAATTTTTTGTTATTTTTTTTTATATTTATAAAAAAAAAAAAAAAATAAAAAATATTTTTaatattata                              >  1:1608838/2‑121 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTT‑TAATTGTAATATTAATTTTTTGTTTTTTTTTTGTAAAATTA‑AAAAAAAAAAATAAATTAAAAAAAATTTTTTAAAataataa                            >  1:2890046/1‑127 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATA‑TAAATTTTAGTTATTTTTTTTTATAATTATATAAAAAAATATAAATAAAAAAATTTTTTTAAAATTAATaa                            >  2:47786/1‑127 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAAAGTAAATA‑AAAATTTTTTGTTTTTTTTTTTAAAATTA‑AAAAAAAAAAAAAAAAGTAAAAATAATTTTAAAAATaaaaag                           >  1:1051859/1‑124 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAATGTAAATA‑TAATTTTTTTTTTTTTTTTTTAATATTTAAATAAAAAAATATAAATTAAAAAATTTTTTTaaattaaaaaa                            >  2:2035435/1‑120 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATT‑TAAATTTTTTTTTTTTTTTTTTGTATTTATATAAAAAAATTAAAAGTAAAAAATATTTTTAAAAttattata                           >  2:1259441/1‑126 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGTTATTTTTTTGTCTAATTATATAAAAAAATAGAAAGGAAAAATTATTTTTAAAAGTAATaat                           >  2:1968877/1‑126 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGC‑‑TTGTTTTTTTTTTTTTTTATAATGGAAATT‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATATAAATCTAAAAAAATTTTTaaatattaatct                           >  2:2423443/1‑119 (MQ=255)
                                                                                                      aataattTTAAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTa                          <  1:2749436/126‑1 (MQ=255)
                                                                                                       ttaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTATT‑TATTGTAAATA‑TAATTTTTTGGTTTTTTGTTTTAAATTTATATAAAAAAATTGAAAGAAAAAAATTTTTTTaaatttattaata                          >  2:2331937/1‑118 (MQ=255)
                                                                                                       ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATT‑TAAATTTTAGGTATTTTTTTTTATAATTAAGTAAAAAAATATAAAGGAAAAAATATTTTTAAAAGTaaaaata                          >  1:2598247/1‑123 (MQ=255)
                                                                                                       ttaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTATAATTTTCTAAAAAATAATAATGGAAAAAATAATTTTAAAAGTAATACTaa                         >  2:1015839/1‑128 (MQ=255)
                                                                                                              gAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTTTTGTATAATTATATAAAAAATTTAAAAGGAAAAAATTTTTTTAAAATTAATTATAAAatattt                  >  2:2206246/1‑124 (MQ=255)
                                                                                                                aCTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATAAAAATA‑AAAATTTTTTTTTTTTTTTTTATAAATTATAAAAAAAAAAAAAAATTAAAAAAAATTTTTAAAATTAATAAAAAAaataat                  >  1:2487953/1‑126 (MQ=255)
                                                                                                                aCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTGAAATA‑TAAATTTTAGGTATTTTGTTGTATAATTTTATAAAAAAATAGAAAGTAAAAAATATTTTTAAAATTAATAATAAAattatta                 >  2:1599167/1‑127 (MQ=255)
                                                                                                                     tAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAATTA‑TAATTTTTTGTTATTTTTTTTTATAATTATCTAAAAAAATAAAAAGTAAAAAATATTTTTAAAATTAATAAAAAAatttttatattt            >  1:680625/1‑122 (MQ=255)
                                                                                                                      ttttttaattttttttttttttttttttttATAATTGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg             <  2:167826/117‑1 (MQ=255)
                                                                                                                      aaaaaaTAGC‑‑TTTTTTTTTTTTATTTAAAAAAAGGAAATA‑AAAATTTTAAATATTTATTTTTAAAATAAAAAAAAAAAAAAAAAAATAAAAAAAAATATTAAAAAAAATAATAAAATTATTTAAtttt           >  1:3327001/1‑128 (MQ=255)
                                                                                                                         aaaTAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTATGTTTTTTGTTTTATAATTATATAAAAAAAAAAAAAGGAAAAAATATTTTTAAAAATAATACTAAAATTAtttaattttaat        >  1:1004594/1‑128 (MQ=255)
                                                                                                                          aaTAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATA‑TAAATTTTAGGTATTTTTTTTTATAATTATATAAAAAAATAAAAATAAAAAAAATTTTTTAAAATTAAAATAAAAATTATttaattttaatt       >  1:720712/1‑128 (MQ=255)
                                                                                                                           tagctttttttttttttttttttttATAATGGAAATA‑AAAATTTTTTGTATTTTTTTTTAAAATTATATAAAAAAATTGAAAGAAAAAAATTTTTTTAAAATAAAAAATAAAATTTTTAAATTttatt        >  1:903151/7‑126 (MQ=255)
                                                                                                                           aTAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATA‑TAAATTTTAGGTATTTTTTTTTATAAGTATATAAAAAAATATAAAGTAAAAAATATTTTTAAAATTAATAATAAAATTATTTAATTttaatta      >  2:2616273/1‑128 (MQ=255)
                                                                                                                             aatatttttttttttttttttttATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta      <  2:2727471/124‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                
ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATA‑TAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑