New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 311170	97 (0.060)	75 (0.050)	47/252	33.6	44.4%	intergenic (‑93/‑221)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
	?	CP016816	311174 =	91 (0.060)					intergenic (‑97/‑217)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
Rejected: Coverage evenness skew score above cutoff.

CAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP016816/311044‑311170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATT  >  CP016816/311174‑311273                                                                                                                                                                                                                                      gaaaagatcaTAAAATTGTATTTAAATTTTTCATTTATCACACCCCTTATTAAAAAATATAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATA‑A                                                                                                     <  2:1655633/118‑1            AAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATG                                                                                           <  1:319409/128‑1            AAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATG                                                                                           >  1:2420230/1‑128             AAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATct                                                                                          >  2:2119617/1‑126             AAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGT                                                                                          >  2:181920/1‑128              AATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATA‑AAT‑AAATATCTAAA                                                                                       >  2:2511875/1‑128                 TGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTATAT                                                                                      >  2:2715106/1‑128                 TGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAAT                                                                                      >  1:851359/1‑128                  tTAATTAACTTTTTCATTTTACACACAACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAAAATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATG                                                                                     <  1:2052929/127‑1                   TAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGA                                                                                    >  2:3043447/1‑128                   TAATTAACTTTTTAATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAAAATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGA                                                                                    <  1:3106029/128‑1                    AATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGAAATATTTAAATAAA                                                                                   >  2:2659160/1‑128                       TAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAATTGAAAAT                                                                                >  1:2270109/1‑128                       TAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGAAATATATATATAAAAAT                                                                                >  1:2171500/1‑128                        AACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTATATGAAAATA                                                                               >  1:485224/1‑128                          CTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATTCAATATGTAAATGAAAATATt                                                                             >  1:2943322/1‑127                             TTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTA                                                                          >  2:1978163/1‑128                                aATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTAATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAA                                                                       <  2:1637227/127‑1                                CATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGATAATATGGTTTAA                                                                       >  1:2721320/1‑128                                  TTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATATCATACATTGATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATA                                                                     <  2:1525372/128‑1                                  TTTTACACACCACTTATTAAAAAATAAAATAATTGTTACATACTATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATA                                                                     <  2:1598735/128‑1                                   TTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATTCAATATGTAAAATAAAATATGATATAATAt                                                                    >  2:1277696/1‑127                                     TACACACCCATTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAAAATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCA                                                                  <  1:3043447/128‑1                                      ACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAA                                                                 >  2:3161973/1‑128                                      ACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGAAATATAAAAATTAAAATATTTTATAATAGCAg                                                                 >  1:666993/1‑127                                         CACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATAAAATATATAAATGAAAATAATGTATTATAGCAACag                                                              >  1:2730345/1‑126                                            CCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATATCAACCGATT                                                           >  2:1497862/1‑128                                             aCTTATTAAAAAATAAAATACTTGTTACATAAGATTAAAAAAATATATAACATACATTAATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTA                                                          <  1:2111972/127‑1                                               TTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATTAAATATGTAAATTAAAATATTTTATAATATCAAAAGTTTATA                                                        >  2:16485/1‑128                                               TTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATAGCAAGCGTATATA                                                        >  1:644387/1‑128                                               TTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGATATAATAGCAACAGTTTATA                                                        >  2:2279090/1‑128                                                TATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGAAATATTTAAAAGAAAATATTGTATAATATCAACCGTTTATAA                                                       >  2:265082/1‑128                                                   ttAAAAATAAAATTATTGTTAAATACTATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGT                                                    <  2:2171510/126‑1                                                    AAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATTATATATTTAAATTAAAATATTTTATAATATCAACCGTTTATAAAATA                                                   >  1:715163/1‑128                                                    AAAAAATAAAATAATTGTTAGATACTATTCAAAAAATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTA                                                   <  2:2730345/128‑1                                                     AAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTATATAAATTAt                                                  >  2:1885142/1‑127                                                     AAAAATAAAATACTTGTTACATAATATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAACGAAAATATGGTATAATAGCAACCGTTTATAAAGTAA                                                  <  1:2875762/128‑1                                                      AAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATTCAATATTTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTAAA                                                 >  1:1540989/1‑128                                                      AAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATTTTTAAATGAATATATGTTATATTAGCAACGGTTTATAAAGTAAA                                                 >  1:2471293/1‑128                                                      AAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGAAACCGTTTATAAATTAAA                                                 >  1:2845369/1‑128                                                        AATAAAATACTTGTTATATACTATTCAAAACATATATAACATACATTAATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAA                                               <  1:1894408/128‑1                                                        AATAAAATACTTGTTAAATAAGATTCAAAACATATATAACATATATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAA                                               <  2:3211997/128‑1                                                           AAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAAAGCAATATGAAAATGAAAATATTGTATAATAGCAACCTTATAAAAATTAAAAAAAa                                            >  1:2535335/1‑127                                                               TACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATTAAAATATGTTATAATAGCAACCGTTTAGAAATTAAAAAAATAGTA                                        >  2:1756716/1‑128                                                               TACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGAAATATTTAAATGAAAATATGTTATAATATAAACATTTTATAAAGTAAAAAAATATTA                                        >  2:2280776/1‑128                                                                agTTGTTACATACGATTTAATACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAA                                       <  1:2512426/126‑1                                                                  TTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAAT                                     >  1:2039745/1‑128                                                                  TTGTTACATAAGAATCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAAT                                     <  2:3050188/128‑1                                                                   tgtttaATAAGATTCAAAACATATATAACATACATTCATTATATATATATTTATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATA                                    <  2:1435216/122‑1                                                                   TGTTACATACGATTCAAAAAATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATA                                    <  2:1453253/128‑1                                                                      TACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTTTATAATATCAACCTTTTATAAAGAAAAAAAATAGTAAATATAC                                 >  2:3297314/1‑128                                                                      TACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCACACGTTTATAAATTAAAAAAATAGTAAATATAC                                 >  1:224572/1‑128                                                                      TACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATATTAAATATAC                                 >  2:185740/1‑128                                                                          TACGATTCAAAACATATATAACATACATTAATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAagtagta                             <  2:1959467/128‑8                                                                             GATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTAT                          <  2:2714367/128‑1                                                                                    tACATATATATCATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAA                   <  1:3041328/127‑1                                                                                    aaaATATATAACATATATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAA                   <  2:2851212/125‑1                                                                                      aATATATATAATATATTATTTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATA                 <  2:2461717/127‑1                                                                                       ATATATAAAATAAATTAATTATATATATATATATATATATATAATGCAATATGTAAATGAATATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAA                <  1:1676711/128‑1                                                                                       ATATATAAAATAAATTAATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAA                <  1:2667626/128‑1                                                                                        TATATAACATACATTCATTATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGTTATAATATCAACCGTTTATAAAGTAAAAAAATAGTAAATATAATACTTATTTACTAATAAA               >  2:2836252/1‑128                                                                                        TATATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATATCAACCGTTTATAAATTAAAAAAATATTAAATAAAATACTTATATAATAATAAA               >  2:1067142/1‑128                                                                                        TATATAACATACATTCATTATATATATATATATATATATATAAAGCAATATGTAAATTAAAATATTGTATAATATAAACAGTTTATAAATTAAAAAAATATTAAATATACTTCTTATTTACTAATAAA               >  2:1055594/1‑128                                                                                        TATATAACATAAATTAATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAA               <  1:641434/128‑1                                                                                         ATATAACATACATTCATTATATATATATATATATATATATAATTCAATATGTAAATGAAATTATGGAATAATAGCAAAAGTTTATAAAGATAAAAAATAGTAAATATTCTAATTATTAACTAATAAAA              >  1:2978080/1‑128                                                                                          TATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAAT             <  1:2470093/128‑1                                                                                          TATAACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAAT             <  2:851359/128‑1                                                                                             AACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTA          >  2:3221217/1‑128                                                                                              ACATACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAT         <  2:2845369/128‑1                                                                                                 TACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATAGTAATTTTTTACATAGAAATTCTATTTT      >  2:155132/1‑128                                                                                                 TACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTT      >  2:1606940/1‑128                                                                                                 TACATTCATTATATATATATATATATATATATAATGAAATATGTAAATGAAAATATGGTATAATAGCAACCGTATATAAATTAAAAAAATATTAAATATACTACTTATTTACTAATAAAATCTATTTT      >  1:475684/1‑128                                                                                                  ACATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAATTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTT     >  2:1590622/1‑128                                                                                                   CATTCATTATATATATATATATATATATA‑AA‑GAAATATGTATATTAAAATATGTTATAATATCAACATTTTATAAAATAAAAAAATATTAAATATACTAATTATTTAATAATAAAATCTATTTTTATT  >  1:2626020/1‑128                                                                                                    ATTCATTATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTAT   <  1:265082/128‑1                                                                                                                                                                                                                                      CAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP016816/311044‑311170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATT  >  CP016816/311174‑311273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.