mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 37.1% | 31.8 / 27.5 | 36 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 609,128 | 0 | C | G | 35.7% | 5.4 / 12.6 | 14 | P355R (CCA→CGA) | insL1 | IS186 transposase |
| * | NC_000913 | 609,131 | 0 | C | G | 35.7% | 4.4 / 12.6 | 14 | S356W (TCG→TGG) | insL1 | IS186 transposase |
| * | NC_000913 | 4,296,190 | 0 | A | G | 26.3% | 39.9 / 17.7 | 42 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 23.8% | 37.1 / 18.7 | 42 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 51 (0.860) | 14 (0.250) | 13/536 | 4.3 | 21.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 56 (1.000) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 225281 | NA (NA) | 12 (0.200) | 11/558 | 5.1 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 1207790 = | 58 (0.970) | 9 (0.160) | 8/536 | 6.0 | 13.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 57 (1.010) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 721003 | 89 (1.490) | 5 (0.090) | 5/550 | 7.6 | 5.6% | intergenic (+163/+53) | ybfK/kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| ? | NC_000913 | = 721011 | 81 (1.400) | intergenic (+171/+45) | ybfK/kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD | |||||
| * | ? | NC_000913 | 1117866 = | NA (NA) | 4 (0.070) | 4/548 | 8.1 | NA | intergenic (+7/+35) | yceA/yceI | putative rhodanese‑related sulfurtransferase/periplasmic high pH‑inducible lipid‑binding protein |
| ? | NC_000913 | 1117891 = | NA (NA) | intergenic (+32/+10) | yceA/yceI | putative rhodanese‑related sulfurtransferase/periplasmic high pH‑inducible lipid‑binding protein | |||||
| * | ? | NC_000913 | = 1572380 | 68 (1.140) | 4 (0.070) | 4/558 | 8.2 | 5.7% | intergenic (‑335/+27) | gadB/pqqL | glutamate decarboxylase B, PLP‑dependent/putative periplasmic M16 family zinc metalloendopeptidase |
| ? | NC_000913 | = 1572395 | 65 (1.110) | intergenic (‑350/+12) | gadB/pqqL | glutamate decarboxylase B, PLP‑dependent/putative periplasmic M16 family zinc metalloendopeptidase | |||||
| * | ? | NC_000913 | 1522897 = | 67 (1.120) | 4 (0.070) | 4/560 | 8.3 | 5.7% | coding (169/2103 nt) | yncD | putative iron outer membrane transporter |
| ? | NC_000913 | 1522913 = | 67 (1.140) | coding (153/2103 nt) | yncD | putative iron outer membrane transporter | |||||