mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest polymorphism score 20 of 687 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,963,293 | 1 | . | C | 11.1% | 150.7 / 16.9 | 45 | coding (937/1485 nt) | gpp | guanosine pentaphosphatase/exopolyphosphatase |
| * | NC_000913 | 1,572,928 | 0 | C | G | 12.1% | 175.9 / 15.2 | 58 | A759P (GCA→CCA) | pqqL | putative periplasmic M16 family zinc metalloendopeptidase |
| * | NC_000913 | 3,963,299 | 0 | G | . | 11.1% | 139.5 / 9.9 | 45 | coding (931/1485 nt) | gpp | guanosine pentaphosphatase/exopolyphosphatase |
| * | NC_000913 | 1,322,398 | 0 | C | G | 11.4% | 119.8 / 8.5 | 44 | V183V (GTG→GTC) | trpE | component I of anthranilate synthase |
| * | NC_000913 | 4,296,286 | 0 | C | T | 15.6% | 81.1 / 8.3 | 43 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,781,145 | 0 | C | G | 12.9% | 116.4 / 7.1 | 46 | intergenic (+128/‑70) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 3,113,401 | 0 | G | T | 14.3% | 87.8 / 7.0 | 40 | A26D (GCC→GAC) | yghG | secretin (GspDbeta) OM localization lipoprotein pilotin |
| * | NC_000913 | 1,322,394 | 0 | C | G | 11.2% | 123.1 / 6.6 | 44 | D185H (GAC→CAC) | trpE | component I of anthranilate synthase |
| * | NC_000913 | 3,781,133 | 0 | C | G | 14.7% | 121.1 / 6.6 | 47 | intergenic (+116/‑82) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 1,322,396 | 0 | A | T | 11.4% | 115.9 / 6.5 | 44 | I184N (ATT→AAT) | trpE | component I of anthranilate synthase |
| * | NC_000913 | 3,891,664 | 0 | C | G | 11.8% | 93.8 / 6.5 | 34 | A17G (GCC→GGC) | mdtL | multidrug efflux system protein |
| * | NC_000913 | 1,151,873 | 0 | T | A | 10.9% | 118.6 / 6.4 | 46 | intergenic (+22/‑66) | acpP/fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| * | NC_000913 | 1,151,874 | 0 | T | A | 10.9% | 124.3 / 6.4 | 46 | intergenic (+23/‑65) | acpP/fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| * | NC_000913 | 699,433 | 0 | C | A | 12.7% | 103.0 / 6.1 | 42 | intergenic (‑256/+141) | asnB/umpH | asparagine synthetase B/UMP phosphatase |
| * | NC_000913 | 699,439 | 0 | G | T | 12.0% | 106.8 / 6.0 | 43 | intergenic (‑262/+135) | asnB/umpH | asparagine synthetase B/UMP phosphatase |
| * | NC_000913 | 3,815,809 | 0 | G | . | 84.9% | 103.4 / 6.0 | 33 | intergenic (‑41/+25) | pyrE/rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| * | NC_000913 | 4,360,314 | 0 | A | T | 11.4% | 94.2 / 4.6 | 35 | intergenic (‑283/+82) | cadB/cadC | putative lysine/cadaverine transporter/cadBA operon transcriptional activator |
| * | NC_000913 | 4,360,310 | 0 | A | T | 11.4% | 97.5 / 4.5 | 35 | intergenic (‑279/+86) | cadB/cadC | putative lysine/cadaverine transporter/cadBA operon transcriptional activator |
| * | NC_000913 | 4,360,312 | 0 | A | T | 11.4% | 94.6 / 4.5 | 35 | intergenic (‑281/+84) | cadB/cadC | putative lysine/cadaverine transporter/cadBA operon transcriptional activator |
| * | NC_000913 | 1,870,261 | 0 | G | A | 11.6% | 94.7 / 3.5 | 37 | intergenic (+23/‑124) | yeaH/yeaI | UPF0229 family protein/putative membrane‑anchored diguanylate cyclase |