New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1242577 =	128 (0.850)	3 (0.020)	3/506	NT	2.4%	coding (504/915 nt)	ldcA	murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
	?	NC_000913	1242595 =	122 (0.870)					coding (486/915 nt)	ldcA	murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A

GACTACCCCCAACACCATCGTGCTGGCTGTACGCGGCGGTTACGGTGCCAGTCGTTTACTGGCAGATATTGACTGGCAGGCACTGGTGGCTCGCCAACAACATGACCCGTTGCTCATTTGCGGACATAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTTTAGCGGCCCCATGCTGGTAGCAAACTTTGGCGCGGATGAACTGAACGCCTTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1242892‑1242577 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCGTACAGCCAGCACGATGGTGTTGGGGG  >  NC_000913/1242595‑1242887                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GACTACCCCCAACACCATCGTGCTGGCTGTACGCGGCGGTTACGGTGCCAGTCGTTTACTGGCAGATATTGACTGGCAGGCACTGGTGGCTCGCCAACAACATGACCCGTTGCTCATTTGCGGATATAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTTTAGCGGCCCCATGCTGGTAGCAAACTTTGGCGCGGATGAACTGAACGCCTTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGG                                                                                                                                                                                                                                                                                                                       >  2:1051258/1‑300     ACCCCCAACACCATCGTGCTGGCTGTACGCGGCGGTTACGGTGCCAGTCGTTTACTGGCAGATATTGACTGGCAGGCACTGGTGGCTCGCCAACAACATGACCCGTTGCTCATTTGCGGACATAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTTTAGCGGCCCCATGCTGGTAGCAAACTTTGCCGCGGATGAACTGAACGCCTTTACCGCGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGA                                                                                                                                                                                                                                                                                                                  >  2:616981/1‑301      CCCCCAACACCATCGTGCTGGCTGTACGCGGCGGTTACGGTGCCAGTCGTTTACTGGCAGATATTGACTGGCAGGCACTGGTGGCTCGCCAACAACATGACCCGTTGCTCATTTGCGGACATAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTTTAGCGGCCCCATGCTGGTAGCAAACTTTGGCGCGGATGAACTGAACGCCTTTACCGAGAACCATTTCTGGCTGGCGTTACGCAATGAACCCTTCACCATTGAATGGCAAGGGGAAGGGCCGc                                                                                                                                                                                                                                                                                                                  >  2:157405/1‑299                                                                           GGCAGGCACTGGTGGCTCGCCAACAACATGACCCGTTGCTCATTTGCGGACATAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTTTAGCGGCCCCATGCTGGTAGCAAACTTTGGCGCGGATGAACTGAACGCCTTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACA                                                                                                                                                                                                                                                                                                                >  1:351845/1‑233                                                                                     GGTGGCTCGCCAACAACATGACCCGTTGCTCAGTTGCGGACAGAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTGTAGCGGCCCCATGCTGGTAGCAAACGTGGGCGCGGATGAACTGAACGCCTTTACCGAGCACCAGTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGG                                                                                                                                                                                                                                   <  2:251709/300‑1                                                                                                                                                                             GTCATCACCTTTAGCGGCCCCATGCTGGGAGCAAACTTTGGCGCGGATGAACTGAACGCCTTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAAT                                                                                                                                                                                                                                                  <  2:263361/197‑1                                                                                                                                                                                                                                                      ATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGAC                                                                                                                                                                         <  1:263359/197‑1                                                                                                                                                                                                                                                                                                                 cCATGTCGGGCCTTCCCCTTTCCATTCAATGGTGAAGGTTTCATTGGGTAACGCCAGCCAGAAATGGTGCCCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCGTACAGCCAGCACGATGGTGTTG      <  2:1400734/300‑1                                                                                                                                                                                                                                                                                                                   ATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCCCTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCACTATCTGCCAGTAAACGACTGGCACCGTACCCGCCGCGTACAGCCAGCCCGCTGGTGTTGGG    >  1:119605/1‑301                                                                                                                                                                                                                                                                                                                    TGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCC                                                                       >  2:351846/1‑233                                                                                                                                                                                                                                                                                                                      TCGGGCCTTCCCCGTGCCATTCAATGGTGAAGGTTTCATGGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCGTACAGCCAGCACGATGGTGTTGGGGG  <  2:27006/300‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GACTACCCCCAACACCATCGTGCTGGCTGTACGCGGCGGTTACGGTGCCAGTCGTTTACTGGCAGATATTGACTGGCAGGCACTGGTGGCTCGCCAACAACATGACCCGTTGCTCATTTGCGGACATAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTTTAGCGGCCCCATGCTGGTAGCAAACTTTGGCGCGGATGAACTGAACGCCTTTACCGAGCACCATTTCTGGCTGGCGTTACGCAATGAAACCTTCACCATTGAATGGCAAGGGGAAGGCCCGACATGTCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1242892‑1242577 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccgacatgtcgggccTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCAGAAATGGTGCTCGGTAAAGGCGTTCAGTTCATCCGCGCCAAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTAAACGACTGGCACCGTAACCGCCGCGTACAGCCAGCACGATGGTGTTGGGGG  >  NC_000913/1242595‑1242887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.