mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 30.0% | 63.1 / 55.0 | 81 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 29.5% | 78.9 / 47.9 | 81 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 23.5% | 146.1 / 45.3 | 85 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 120 (0.910) | 30 (0.310) | 14/438 | 9.3 | 27.0% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 74 (0.770) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 4542690 | 166 (1.260) | 7 (0.050) | 7/580 | 16.3 | 4.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 166 (1.300) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 622844 | 102 (0.770) | 4 (0.030) | 4/580 | 18.6 | 3.7% | coding (545/1251 nt) | entS | enterobactin exporter, iron‑regulated |
| ? | NC_000913 | = 622962 | 107 (0.840) | coding (663/1251 nt) | entS | enterobactin exporter, iron‑regulated | |||||
| * | ? | NC_000913 | = 2713829 | 122 (0.920) | 3 (0.020) | 3/576 | 19.4 | 2.6% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 109 (0.860) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | 3047300 = | 105 (0.800) | 3 (0.020) | 3/582 | 19.5 | 3.0% | coding (1742/2874 nt) | gcvP | glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| ? | NC_000913 | 3047424 = | 94 (0.730) | coding (1618/2874 nt) | gcvP | glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex | |||||