New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	55 (0.370)	45/514	NT	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA  >  NC_000913/1978985‑1979552                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                  aaaataaccaactttaattgtatgcggttgtaccgaaccccgggatgtcggccggaagccccggtaaaaaataatgagcattagaatagtggggataagctgtaaacagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtcgttacacttatctaagatttgtcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                                                                                                                                                                                                             <  2:1167792‑M2/7‑1 (MQ=255)  aaataacacactgtagtttgatgcggtttaaccgaaccccgggatgtcgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                                                                                                                                                                                                            <  1:563340‑M2/8‑1 (MQ=255)   aataaccaactttattgtgatgctgtttccccacacccctcgatgtcgccgtgaagtcccggtaaaaaataattagcattagaatagttgctataagcttcaataatcatcaccatcgttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagattgttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagagcacacaaaacactcaagtacttaacataaatgTATAAg                                                                                                                                                                                                                                                                              <  1:1160035‑M2/6‑1 (MQ=255)           actttatttttatgcggtttcaccgcaccccgtgatgtcgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcttcactacccgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatccccaaaaacccccaattacttaacataaatgtataagtcctgtttctt                                                                                                                                                                                                                                                                   >  1:854907‑M2/285‑292 (MQ=255)           aatttatttttatgcggtttcaccgcaccccgtgatgtcgccgggaagccccggtaaaaaagaattagcattagaatagttgcgataagctgcaataagcagaaacacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                                                                                                                                                                                                            <  2:854918‑M2/8‑1 (MQ=255)                                                                    aaaataattagaattacaatagttgcgataagcggcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacgtatataagagttttcctaaatcgacgcaaccgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                                                                                                                                                                                                          <  2:817117‑M2/74‑1 (MQ=255)                                                                               cattagaatagttgcgataagctgcaataagcagaaccaccttttttgtttaataggtccttaaaaatagaaatgggtctttacacttatctaagattttgcctaaatcgacgcaactgtactcgtcactacacgcacatacaacgtatgggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTc                                                                                                                                                                                                                                                    <  1:506440‑M2/32‑1 (MQ=255)                                                                               cattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaacgTATACGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAACGTTTTTCGCTACGCTAGCACGCAAAAATGAAACAGGaata                                                                                                                                                                                               >  2:146173‑M2/217‑301 (MQ=255)                                                                               cattagaatagttgagataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacaaacaacggaggggggctgcgattttcaataatgcgtgatgcagatcccacaaaacactcaattacttaacatcactgTATAAGTCATACTTTTGTTTTGGGTGTATTTc                                                                                                                                                                                                                                                    >  2:506448‑M2/217‑248 (MQ=255)                                                                                                        tataagcagaaccctctttttggtttaatatgtcctcacaaatagaaatgggtctttacacttatctaacatttttcctaaatcgacgccactgtactcgtcactacacgcacatacaacggaggggggctgctattttaaataatgcgcgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACGTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                                                                                                                                                      <  1:72377‑M2/110‑1 (MQ=255)                                                                                                           aagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACt                                                                                                                                                                                                                                                                       <  2:1182321‑M2/13‑1 (MQ=255)                                                                                                           aagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACt                                                                                                                                                                                                                                                                       >  1:1182288‑M2/189‑201 (MQ=255)                                                                                                                                 taatatggtcatacaaatataaatgggttctgacacttaactaagatttttccgaaatcgacgcaactgtactcgtcactacacgcacatacatcggagggtggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatca                                                                                                                                             <  1:1197504‑M2/135‑1 (MQ=255)                                                                                                                                             ttgtatcatgtacctttgttacacttatctaatatttttccctaatcaaagcacctgtgctcgtcactacacggacatacaacggagtggtgctgcgattttcaataatccgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAGACTTTTGTTTTTGGTGTATTTCAACCTGTTAAAAAGTTTTTCGCTACTCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaat                                                                                                                                 <  1:1282760‑M2/147‑1 (MQ=255)                                                                                                                                             acaaatagaaatgggtctgtacacttatctaagatttttcctaaagcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaacgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaat                                                                                                                                 <  1:146169‑M2/147‑1 (MQ=255)                                                                                                                                                           gtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCTTACAGTCAAAATAAATCACCTTAAATAATCATCTGCTATAAATAATCCCTTTcatta                                                                                                                   >  2:798738‑M2/141‑299 (MQ=255)                                                                                                                                                            tctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTc                                                                                                                                                           >  2:407069‑M2/140‑260 (MQ=255)                                                                                                                                                            tctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTc                                                                                                                                                           <  1:407062‑M2/121‑1 (MQ=255)                                                                                                                                                            tctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgaacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacaaaaaacactcaattacttaacatacatgTATAAGTCATCCTTTTGTTTTGGGTGTATTTCCATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACCGGACTAATCGAAATGGGATCTTGCGCACAGGCAAAATACCTCACCGTAAATCATCATATGCTatacat                                                                                                                                 >  2:1282799‑M2/140‑286 (MQ=255)                                                                                                                                                                     ttatctaagaattgtcctaaatacacgcaactgtactcgtcactacacgcacatacaacggaggggggctgctattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGAt                                                                                                         <  1:798728‑M2/171‑1 (MQ=255)                                                                                                                                                                                                caactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGCAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCg                                                                              >  2:722866‑M2/104‑301 (MQ=255)                                                                                                                                                                                                     gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                                                                                                                                                                                                      <  2:873519‑M2/46‑1 (MQ=255)                                                                                                                                                                                                     gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                                                                                                                                                                                                      >  1:873508‑M2/99‑144 (MQ=255)                                                                                                                                                                                                      aatgtgtataagagaaagcatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATATGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCacaac                                                                        <  1:1305907‑M2/204‑1 (MQ=255)                                                                                                                                                                                                       actcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTATATTTCAATCTGTTCAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGCATAATCGCAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTCGAACTAATCACTTTCATGCAATACCAGCTAAGCTCTTTTTAAACAGACCCTTACCGCacaaca                                                                       >  2:1165691‑M2/97‑301 (MQ=255)                                                                                                                                                                                                               ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAtt                                                               >  2:289301‑M2/89‑301 (MQ=255)                                                                                                                                                                                                                    gccacatacaacggaggggggctgagattttcaataatgcgtgatgcagatcacacaaaacactcaagtacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                                                                                                                                                              <  2:95210‑M2/118‑1 (MQ=255)                                                                                                                                                                                                                    cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcacttacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAACGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCCACATaa                                                                                                                                                              >  1:95207‑M2/84‑201 (MQ=255)                                                                                                                                                                                                                      cacatacaacggaggggggcttcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATAc                                                         <  1:722857‑M2/219‑1 (MQ=255)                                                                                                                                                                                                                      cacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGc                                                                                                                   <  2:1180454‑M2/161‑1 (MQ=255)                                                                                                                                                                                                                      cacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGc                                                                                                                   >  1:1180421‑M2/82‑242 (MQ=255)                                                                                                                                                                                                                        catacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATATGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAACTAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCacaac                                                                        >  2:1305947‑M2/80‑283 (MQ=255)                                                                                                                                                                                                                            caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAACATGAAACAGGAATAATCGAAATGGGAt                                                                                                                                                                                  >  1:875600‑M2/76‑173 (MQ=255)                                                                                                                                                                                                                            caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt                                                                                                                                                                                  <  2:875611‑M2/98‑1 (MQ=255)                                                                                                                                                                                                                            caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATAc                                                                                                              <  1:1253268‑M2/166‑1 (MQ=255)                                                                                                                                                                                                                            caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATAc                                                                                                              >  2:1253305‑M2/76‑241 (MQ=255)                                                                                                                                                                                                                               cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacttaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGc                                               <  1:289295‑M2/229‑1 (MQ=255)                                                                                                                                                                                                                                              attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTc                                                                                                                                                                                                                                                    <  2:714903‑M2/32‑1 (MQ=255)                                                                                                                                                                                                                                              attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTc                                                                                                                                                                                                                                                    >  1:714894‑M2/58‑89 (MQ=255)                                                                                                                                                                                                                                                tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                                                                                                                                                                 <  1:1367119‑M2/115‑1 (MQ=255)                                                                                                                                                                                                                                                tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                                                                                                                                                                 >  2:1367159‑M2/56‑170 (MQ=255)                                                                                                                                                                                                                                                tttaaaaaatgcgtgaagaagatcaaaaaaaacacgcaattacgtaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAGATGGTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACttaatgt                              <  1:1165658‑M2/246‑1 (MQ=255)                                                                                                                                                                                                                                                               atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                                                                                                                                                              >  1:263977‑M2/41‑158 (MQ=255)                                                                                                                                                                                                                                                               atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATACTCATCTGCTATCAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa               >  1:1089687‑M2/41‑301 (MQ=255)                                                                                                                                                                                                                                                               atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaat                                                                                                                                 >  1:976056‑M2/41‑187 (MQ=255)                                                                                                                                                                                                                                                               atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGACGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaat                                                                                                                                 <  2:976069‑M2/147‑1 (MQ=255)                                                                                                                                                                                                                                                                  cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGTTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACTCTAGCAAGCAAAAATGAAACAGGAATAATCGAATTTGGATTTTGCGCACAGTCAAAATAACTCACATTAAATAATCATCTGCTATAAATAATCACTTTACTGCACTACCAGATAAGCTATTTTTAAACAGACACTTACCGCAAAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAcaa            >  1:1442674‑M2/38‑300 (MQ=255)                                                                                                                                                                                                                                                                      tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACCCACCGTAAATAATCATCTGCTATAAATAATCCCTTTCATGCAATACCAGCTAAGCTATTTTTAAACAGACACTTACCGCACAACAACCTAATTCAATACAATGAAAGGAAACAATAAACTTCATGTTAATGAACTGTTTTACatatat        >  1:1540695‑M2/34‑301 (MQ=255)                                                                                                                                                                                                                                                                        acacaaaacactcaattacttaacataaatgTATAAg                                                                                                                                                                                                                                                                              >  2:653359‑M2/32‑37 (MQ=255)                                                                                                                                                                                                                                                                        acacaaaacacgcaattacttaacataaatgTATAAg                                                                                                                                                                                                                                                                              <  1:653351‑M2/6‑1 (MQ=255)                                                                                                                                                                                                                                                                            aaaacactcaattacttaacaaaaatgTATAAGGCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTGTTCACTACGCTAGCAAGAAAAAATGAAACAGGAATAAGTGAAATGGGATGTTGCGCAAAGTCAAAATAACTCACCGTAAATAATCAACTGATATAAATAATCACTTTCATGCAATAACAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCa  <  2:1442716‑M2/274‑1 (MQ=255)                                                                                                                                                                                                                                                                               acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATa                                                                                                                                                               <  1:277748‑M2/117‑1 (MQ=255)                                                                                                                                                                                                                                                                               acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATa                                                                                                                                                               >  2:277755‑M2/25‑141 (MQ=255)                                                                                                                                                                                                                                                                                    caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGACTAATCGAAATGGGATGTTGCGCACAGTCACAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAAtacaacaa                                                    >  1:597507‑M2/20‑240 (MQ=255)                                                                                                                                                                                                                                                                                    caattacttaacagaaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACaaaga                                                    <  2:597515‑M2/224‑1 (MQ=255)                                                                                                                                                                                                                                                                                                 taaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc                                                                                                                                                                                                                                                <  1:1112174‑M2/36‑1 (MQ=255)                                                                                                                                                                                                                                                                                                    atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTAc                                                                                >  2:1384496‑M2/4‑199 (MQ=255)                                                                                                                                                                                                                                                                                                    atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTAc                                                                                <  1:1384455‑M2/196‑1 (MQ=255)                                                                                                                                                                                                                                                                                                    atgTATAAGTCATACTTTTGTTTTGGGTGTATTTAAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTa                                                              <  1:715332‑M2/214‑1 (MQ=255)                                                                                                                                                                                                                                                                                                     tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTAc                                                                                >  2:190937‑M2/3‑198 (MQ=255)                                                                                                                                                                                                                                                                                                     tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTAc                                                                                <  1:190933‑M2/196‑1 (MQ=255)                                                                                                                                                                                                                                                                                                      gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAACTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatca                                                                                                                                             >  2:874426‑M2/2‑136 (MQ=255)                                                                                                                                                                                                                                                                                                      gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaat                                                                                                                                 <  2:806718‑M2/147‑1 (MQ=255)                                                                                                                                                                                                                                                                                                      gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaat                                                                                                                                 >  1:806708‑M2/2‑148 (MQ=255)                                                                                                                                                                                                                                                                                                      gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAaataat                                                                                                                              <  2:1366687‑M2/150‑1 (MQ=255)                                                                                                                                                                                                                                                                                                      gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACGAACCGTAAATAATCATCTGCTATAaataat                                                                                                                              >  1:1366647‑M2/2‑151 (MQ=255)                                                                                                                                                                                                                                                                                                      gTATAAGTCATACTTTTGTTTTGGGTGGATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatca                                                                                                                                             <  1:874415‑M2/135‑1 (MQ=255)                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                  GAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA  >  NC_000913/1978985‑1979552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.