mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 1,017,162 | 1 | .→A | 1.5% | 5.6 0.0 ‑0.1 | 198 | coding (1138/1761 nt) | ycbZ | putative peptidase |
| * | NC_000913 | 1,946,127 | 0 | C→T | 100.0% | 4.3 | 3 | L18L (TTG→TTA) | yobI | uncharacterized protein |
| * | NC_000913 | 1,427,677 | 0 | T→. | 1.3% | 3.5 ‑0.5 ‑0.1 | 307 | intergenic (+79/+69) | lomR/insH1 | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/IS5 transposase and trans‑activator |
| * | NC_000913 | 2,786,330 | 0 | C→A | 100.0% | 2.3 | 1 | intergenic (‑493/‑67) | ileY/ygaQ | tRNA‑Ile/uncharacterized protein; putative enzyme |
| * | NC_000913 | 1,047,297 | 1 | .→A | 1.0% | 2.0 0.0 ‑0.6 | 202 | coding (649/2097 nt) | gfcD | putative O‑antigen capsule production periplasmic protein |
| * | NC_000913 | 4,226,482 | 2 | .→A | 1.1% | 2.0 0.0 ‑0.4 | 187 | coding (2655/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| * | NC_000913 | 1,935,228 | 1 | .→T | 1.0% | 1.9 0.0 ‑0.3 | 194 | coding (1087/1476 nt) | zwf | glucose‑6‑phosphate 1‑dehydrogenase |
| * | NC_000913 | 1,134,937 | 1 | .→G | 1.1% | 1.6 0.0 ‑0.3 | 188 | coding (209/783 nt) | flgG | flagellar component of cell‑distal portion of basal‑body rod |
| * | NC_000913 | 1,961,642 | 1 | .→G | 1.0% | 1.6 0.0 ‑0.2 | 200 | coding (1581/1734 nt) | argS | arginyl‑tRNA synthetase |
| * | NC_000913 | 3,606,616 | 2 | .→C | 1.0% | 1.6 0.0 ‑0.2 | 191 | coding (166/2199 nt) | zntA | zinc, cobalt and lead efflux system |
| * | NC_000913 | 273,402 | 1 | .→G | 1.1% | 1.5 0.0 ‑0.5 | 188 | pseudogene (556/1108 nt) | ykfC | CP4‑6 prophage; conserved protein;Phage or Prophage Related |
| * | NC_000913 | 1,851,449 | 1 | .→C | 1.0% | 1.5 0.0 ‑0.3 | 195 | coding (590/1017 nt) | ansA | cytoplasmic L‑asparaginase 1 |
| * | NC_000913 | 3,606,616 | 3 | .→A | 1.0% | 1.5 0.0 ‑0.1 | 191 | coding (166/2199 nt) | zntA | zinc, cobalt and lead efflux system |
| * | NC_000913 | 4,226,482 | 1 | .→G | 1.1% | 1.5 0.0 ‑0.4 | 187 | coding (2655/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| * | NC_000913 | 4,509,858 | 1 | .→C | 1.1% | 1.5 0.0 ‑0.4 | 185 | pseudogene (55/330 nt) | yjhV | pseudogene, KpLE2 phage‑like element |
| * | NC_000913 | 3,185,307 | 0 | T→C | 100.0% | 1.4 | 1 | intergenic (+177/‑107) | yqiC/ygiL | BMFP family putative fusogenic protein/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 3,346,342 | 1 | .→C | 1.1% | 1.4 0.0 ‑0.2 | 190 | coding (170/288 nt) | hpf | ribosome hibernation promoting factor HPF; stabilizes 100S dimers |
| * | NC_000913 | 3,634,556 | 0 | T→G | 100.0% | 1.4 | 1 | intergenic (‑98/‑285) | yhiL/yhiM | pseudogene, DUF4049 family protein/acid resistance protein, inner membrane |
| * | NC_000913 | 1,433,980 | 0 | A→G | 100.0% | 1.3 | 1 | intergenic (‑306/+11) | pinR/ynaE | Rac prophage; putative site‑specific recombinase/cold shock protein, Rac prophage |
| * | NC_000913 | 3,424,244 | 0 | G→T | 100.0% | 1.3 | 1 | noncoding (2540/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,498,463 | 0 | A→C | 100.0% | 1.3 | 1 | G64G (GGA→GGC) | insC1 | IS2 repressor TnpA |
| * | NC_000913 | 2,872,523 | 1 | .→C | 1.0% | 1.2 0.0 ‑0.1 | 191 | coding (298/312 nt) | ftsB | cell division protein |
| * | NC_000913 | 3,424,231 | 0 | C→A | 100.0% | 1.2 | 1 | noncoding (2553/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,238 | 0 | A→C | 100.0% | 1.2 | 1 | noncoding (2546/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,260 | 0 | C→A | 100.0% | 1.2 | 1 | noncoding (2524/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,214 | 0 | C→A | 100.0% | 1.1 | 1 | noncoding (2570/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,704,088 | 1 | .→T | 1.0% | 1.0 0.0 ‑0.0 | 193 | coding (221/1041 nt) | ydgJ | putative oxidoreductase |
| * | NC_000913 | 1,704,088 | 2 | .→G | 1.0% | 1.0 0.0 ‑0.1 | 193 | coding (221/1041 nt) | ydgJ | putative oxidoreductase |
| * | NC_000913 | 3,185,287 | 0 | T→G | 100.0% | 0.9 | 1 | intergenic (+157/‑127) | yqiC/ygiL | BMFP family putative fusogenic protein/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 3,185,295 | 0 | T→G | 100.0% | 0.9 | 1 | intergenic (+165/‑119) | yqiC/ygiL | BMFP family putative fusogenic protein/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 3,185,338 | 0 | T→G | 100.0% | 0.9 | 1 | intergenic (+208/‑76) | yqiC/ygiL | BMFP family putative fusogenic protein/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 3,634,613 | 0 | C→A | 100.0% | 0.9 | 1 | intergenic (‑155/‑228) | yhiL/yhiM | pseudogene, DUF4049 family protein/acid resistance protein, inner membrane |
| * | NC_000913 | 4,541,788 | 0 | C→A | 100.0% | 0.9 | 1 | intergenic (+229/‑249) | fimB/fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA |
| * | NC_000913 | 2,904,449 | 0 | G→T | 100.0% | 0.8 | 1 | intergenic (+1075/+298) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 3,185,337 | 0 | A→T | 100.0% | 0.8 | 1 | intergenic (+207/‑77) | yqiC/ygiL | BMFP family putative fusogenic protein/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 3,424,195 | 0 | T→G | 100.0% | 0.8 | 1 | noncoding (2589/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,211 | 0 | G→T | 100.0% | 0.8 | 1 | noncoding (2573/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,280 | 0 | A→T | 100.0% | 0.8 | 1 | noncoding (2504/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,631,652 | 1 | .→G | 1.1% | 0.6 0.0 ‑0.0 | 190 | coding (920/1938 nt) | slt | lytic murein transglycosylase, soluble |
| * | NC_000913 | 15,126 | 1 | .→T | 1.0% | 0.5 0.0 ‑0.1 | 206 | coding (959/1131 nt) | dnaJ | chaperone Hsp40, DnaK co‑chaperone |
| * | NC_000913 | 1,704,088 | 4 | .→G | 1.0% | 0.1 0.0 ‑0.0 | 193 | coding (221/1041 nt) | ydgJ | putative oxidoreductase |