breseq  version 0.27.1  revision 87c22d663cc3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,296,268	0	T	C	37.2%	51.1 / 46.0	55	intergenic (+474/+168)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*	NC_000913	4,296,286	0	C	T	26.9%	82.1 / 27.9	52	intergenic (+492/+150)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*	NC_000913	4,296,304	0	A	C	24.0%	82.7 / 16.5	50	intergenic (+510/+132)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*	NC_000913	4,296,303	0	A	G	22.0%	87.6 / 17.3	50	intergenic (+509/+133)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1096961 =	71 (0.850)	19 (0.310)	9/440	6.8	30.4%	intergenic (+132/+604)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913	= 1097503	35 (0.570)					intergenic (+674/+62)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
*	?	NC_000913	= 4542690	137 (1.630)	9 (0.110)	9/582	9.0	6.4%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913	= 4542986	132 (1.620)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
*	?	NC_000913	731467 =	65 (0.780)	4 (0.050)	3/582	12.7	6.7%	coding (1885/4194 nt)	rhsC	Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	731696 =	49 (0.600)					coding (2114/4194 nt)	rhsC	Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor