Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	63 [0]	[0] 62	[rph]–[rph]	[rph], [rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	60 (1.020)	53/552	0.1	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
	?	NC_000913	3815941 =	0 (0.000)					pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

CAGGGCCAAACAGCAGATCGAACTCAATGCCGGAATCCACCAACGCTTCAGCGTAAAAACGGCCTAACAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCC  >  NC_000913/3815558‑3816157                                                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                                            cAGGGCCAAACAGCAGATCGACATCAATGCCGGAATCCACCAACGCTTCAGCGTAAAAACGGCCTAACCGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATGTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC                                                                                                                                                                                                                                                                                                             <  2:500712‑M1/301‑1 (MQ=255)           caaaagatcgACCTCAAAGCCGGAATCCACCAACGATTCAGCGGAAAAACGGCCTAACAGGGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgc                                                                                                                                                                                                                                                                                                   <  2:244273‑M1/297‑11 (MQ=255)              cagATCGAACTCAATACCGGAATCCACCAACGTTTCCGCGTAAAAACGGCCTAACAGTGCCAGATCGCGCCCTGTATTAAACAGCCCGGCGTTGAAGAAATAGTGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcact                                                                                                                                                                                                                                                                                                <  2:83049‑M1/301‑14 (MQ=255)               agATCGAACTCAATGCCGGAATCCACCAACGCTTCAGCGTAAAAACGGCCTAACAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATCTGGTTTCATGCCTTCGCTACTGATATTAATTTTCTCCAAACTAAAAAAAGGCTACTCACCAGTTGCCTTAAAAATCAAGTTGCCCACACCGCCTTCTCCctttcccttcccgt                                                                                                                                                                                                                                                                                               >  2:195937‑M1/1‑287 (MQ=255)                       cTCAATGCCGGAATCCACCAACGCTTCAGCGTAAAAACGGCCTAACAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACACAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatc                                                                                                                                                                                                                                                                                       >  1:102904‑M1/1‑279 (MQ=255)                         cAATGCCGCAATCCACCAACCCTTCATCGTAAAAACGGCCTAACAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGTCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACTCCTGCTTGCTAAGGGCAAGTTCAATATACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc                                                                                                                                                                                                                                                                                      <  1:565487‑M1/300‑24 (MQ=255)                               cGGAATCCACCAACGCTTCAGCGTAAAAACGGCCTAACAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtc                                                                                                                                                                                                                                                                               <  1:41101‑M1/301‑31 (MQ=255)                                           acacttcAGCGTAAAACAGGCCTAAACATGACAGATCGCGCCCGGTATTACACAGCCCGGCTTTGAAGAAATAGGGGATTTTGCGCCCGGAGTTATGAGTAAACTCGCCAAACTTTAACACCTGCTTGCGAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcac                                                                                                                                                                                                                                                                   <  2:556748‑M1/298‑43 (MQ=255)                                                 cAGCGTAAAAACGGCCTAACAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCTGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTTCTAAGCGCAAATTCAATAAACCGT‑CGCCGATAGGGTTTCATGCCTTCCCTCCTCATCTTAATTTTCTACAGACAAAAAAAAGCGGCATTATCAGTAGACTTCAAAATTCGTTTGACTTCGCCGCCTTATGTcgtccacttcccttcaattatgcgcacgcctctgttctgcactccgtt                                                                                                                                                                                                                                                             >  2:347730‑M1/1‑253 (MQ=255)                                                     gTAAAAACGGCCTAACAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGGTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcactgatgcgcccgtcttcgctcatcactaccgtcatg                                                                                                                                                                                                                                                         >  2:234944‑M1/1‑249 (MQ=255)                                                     gTAAAAACGGCCTAACAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGACATGGTTTCATGCCTTCGCCCCTCATCTTACTTTTCTACAGACAATAAAAATGCCACTCATCAGTCGCCCATAAAATCATTCTTCCAGCGCCGCCTTCTGCcctcccctccactgccatgttgctcccgttctcggtcctcactacgctcatc                                                                                                                                                                                                                                                         >  2:57307‑M1/1‑249 (MQ=255)                                                      tAAAAACGGCCTAACAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGATGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACCAAAAAAACGCGACTCATCAGTCGCCTTAAAAATCAGTTTACTAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcctctcttcggtcatcactactttcatgt                                                                                                                                                                                                                                                        >  1:397535‑M1/1‑248 (MQ=255)                                                             ggCCTAACAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctc                                                                                                                                                                                                                                                 <  1:161178‑M1/301‑61 (MQ=255)                                                                  aaCAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg                                                                                                                                                                                                                                            >  1:281090‑M1/1‑236 (MQ=255)                                                                   acaggtccatatcgCGCCCGGGATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggc                                                                                                                                                                                                                                           <  1:407861‑M1/295‑67 (MQ=255)                                                                       tGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGACGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTACACTCGCCAAAATTTAACACCTGCTTGCTAAGCGCAATTTCAATAAACTGG‑CGCTGATCTGGATTCATGCCTTCGCTCCTCCTCTTACTTTTCTACAGCCCAAAAAAAGGCTACTCATCAGTCGCCTAAAAAAACAGTTTGCCAGGGACGCCTTATGCcgtcccctgcacttcaatgatgagcccgtattcggtcatcacgacgttcccgtaggactatgtggcaggg                                                                                                                                                                                                                                       >  2:86414‑M1/1‑231 (MQ=255)                                                                        gCCAGGTCGCGCCCGGTATGAAACAGCCCGGCGTTGAAGAAATAGTGTCTTTTGCGCCCGAATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATCAACTGG‑CGCTGTTATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagag                                                                                                                                                                                                                                       <  1:551904‑M1/300‑71 (MQ=255)                                                                             aTCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTCCcgtcccctgcacttcaatgatgcgcccgtcttcggccatccctacgttcatttcggtccctgccgcagagctttcc                                                                                                                                                                                                                                 >  2:65413‑M1/1‑225 (MQ=255)                                                                                 actccgatATTAAACCACCCGGCGTTTAAGAAATAGGGGCTTTTGCCCCCGGATTTTAGCTTAACCTCCCCCAACTTTACCACCGGCGTGCTAAGCGCAAATTCAATAGTCTGG‑CGCTAATATGGTTTCATGCCTGCGCTCCTCATCTTACTGTTCTACAGGCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacg                                                                                                                                                                                                                              <  2:388224‑M1/297‑80 (MQ=255)                                                                                    ccGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCCATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtaccctgctcttcaatgatgcgcccgtcttcggtcattaatacgttcatgtcggtctctgcggcagagtctttcacgagct                                                                                                                                                                                                                          >  1:388316‑M1/1‑218 (MQ=255)                                                                                            aaaCAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAACCTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTAATCTTACTTTTCTACAGACAAAAAAAAGGCAACTCATCAGTCGCCTTAAAAATCAGTTTGCAAGCGCCGACTTCTGCagtccccttccattcaatgattccgccgtcttctggcatcacttcattcatttttgtcccttcggcagattcttcaacttattcctgat                                                                                                                                                                                                                    >  1:376584‑M1/1‑210 (MQ=255)                                                                                             aaCAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcactacgttcctgtcggtctctgcggcagagtcttcaacgtattcccgatcgc                                                                                                                                                                                                                 >  1:26724‑M1/1‑209 (MQ=255)                                                                                                     ggCGTTGAGCAAATAGGGGCTTTTGCCCCCTGATTTCAGCGTAAACTGCCCAAACTTTAAAACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGTTTTCAGGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgct                                                                                                                                                                                                         <  2:362826‑M1/301‑101 (MQ=255)                                                                                                              gacatatgggCTTTTTCGCCCTAATTTCAACGTAAACACTCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCGTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc                                                                                                                                                                                                <  2:102885‑M1/298‑110 (MQ=255)                                                                                                                  tatgggcttTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGT‑CGCTGATATGGTTTCATGCCTTCTCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCGGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttca                                                                                                                                                                                               <  1:129607‑M1/295‑111 (MQ=255)                                                                                                                  tAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgattcccccgtcttcggccctcactacgtccacgccggtctctgcggccgagtcttcaacgtattccacatcccacaccccttccccgtcca                                                                                                                                                                                               >  2:129576‑M1/1‑188 (MQ=255)                                                                                                                               gcCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccatatcgcaaaccgcttcgccgttcacatttccgacagaaac                                                                                                                                                                               >  1:442944‑M1/1‑175 (MQ=255)                                                                                                                                   ggATTTCAGCGTACACTCGCCAAACTGTAACACCTGCGTGCTAAGCGCAAATGCAATCAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg                                                                                                                                                                           <  1:235008‑M1/301‑131 (MQ=255)                                                                                                                                   cccgatcttcgtaacctcgCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg                                                                                                                                                                           <  1:427872‑M1/292‑131 (MQ=255)                                                                                                                                      tttCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaatacgcaacccgcttcgccgctcacaattccgacagaaactccggcc                                                                                                                                                                        >  2:46932‑M1/1‑168 (MQ=255)                                                                                                                                           gCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcctgtcggtctctgcggcagcgtcttcaccgtattccagatcgcaaaccgcttcgcagttcacaattccgccagaaactgaggataccac                                                                                                                                                                   >  1:262211‑M1/1‑163 (MQ=255)                                                                                                                                           gCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcgagatcggg                                                                                                                                                                   >  2:427772‑M1/1‑163 (MQ=255)                                                                                                                                               aaaCTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATCTGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcc                                                                                                                                                                 <  1:65425‑M1/299‑141 (MQ=255)                                                                                                                                                                           ctAAGCGCAAATTCAATAACCTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                                                                                                                                                                                    <  2:246110‑M1/220‑90 (MQ=255)                                                                                                                                                                           ctAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                                                                                                                                                                                    >  1:246179‑M1/1‑131 (MQ=255)                                                                                                                                                                             tccgctttcttcaataatctGGCCGCT‑TTATGGTTTCCTTCCTCCGCCCCCCACCTTACTTTTCTACAGACAAAAATAAGGCCACTCATCAGTCGCCTTAAAAATCCGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccg                                                                                                                                    <  2:9204‑M1/289‑170 (MQ=255)                                                                                                                                                                               gcgcAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccctccctttcctcggataggttttcacctagccgttttc                                                                                                                               >  2:4062‑M1/1‑127 (MQ=255)                                                                                                                                                                                  acaaagtcaaacacctgtcctagatatggtttcatgccttcgctcCTCATCTTACTTTACTCCAGACAAAAAAAAGGCGACTCAACAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttcca                                                                                                                             <  2:26722‑M1/279‑177 (MQ=255)                                                                                                                                                                                     aTTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaacggcggctaccatccctttcatcggattggttttcagcttgccg                                                                                                                                    >  1:9204‑M1/1‑121 (MQ=255)                                                                                                                                                                                                    cacaaagaggttttccctgcttcctctctcctcttccttatcatcagtcaaaaaaaaggcGACTCATCATTTGCCTTAAAACACAGTGTGCGCGCGCCGCCTTCTGCcgtcccctgcacttcaatgttgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgca                                                                                                            <  2:442836‑M1/273‑194 (MQ=255)                                                                                                                                                                                                                           gCTCCTCATCTTACTTTTCTATAGACCAAAAAAAGGCGACTCATCAGTCGCCTTAAAGATCAGTCTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgaggcgcccgtcttcggtcatcactactttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacc                                                                                     <  1:347819‑M1/300‑217 (MQ=255)                                                                                                                                                                                                                            ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgtttcccaccagcttctgtagcgcatctaccagcgccacgcaggcacccg                                                                                   >  1:24709‑M1/1‑83 (MQ=255)                                                                                                                                                                                                                             cgctcatCCTACATGTACACAGACAAAAAAAAGGCGACTCCTCAGTCGCCTTAAAAATCAGTTTGCCGGCGCCGCCTTCTGCcgacccctgcactacaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtaatccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttgtccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgt                                                                                  <  1:57315‑M1/299‑220 (MQ=255)                                                                                                                                                                                                                                    cTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcccatctcccggcgccccgccggcacccgtaatcgcc                                                                           >  2:86462‑M1/1‑75 (MQ=255)                                                                                                                                                                                                                                                caaccaaaaAAAACGCGACTCCTCAGTCGCCTTAAAAATCAGTGTACCAGCCCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgctgtcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcgtg                                                               <  2:281010‑M1/297‑239 (MQ=255)                                                                                                                                                                                                                                                  aacAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcgtgcc                                                             <  1:86477‑M1/300‑241 (MQ=255)                                                                                                                                                                                                                                                    cAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagacactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatcgaccaccgccccgcaggcccccgtcatcgacgcggtacccttgccac                                                           >  2:435712‑M1/1‑59 (MQ=255)                                                                                                                                                                                                                                                    cAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcctgccac                                                           >  1:113764‑M1/1‑59 (MQ=255)                                                                                                                                                                                                                                                    cAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacccgggcccccgtaatcgacgcggtacgagggcccc                                                           >  1:276841‑M1/1‑59 (MQ=255)                                                                                                                                                                                                                                                    cAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattgggtttcagcttgccgttttccaccagcttctgtagcgcacctcccagcgccaagccggcacccgtaatccacgcggtacgccggcccc                                                           >  2:255365‑M1/1‑59 (MQ=255)                                                                                                                                                                                                                                                         aaaaGGCGCCGCAGCAGTCGCCTTAAAAATCAGTGTGCCAGCGCCGCCTTCTGCcggcccctgcacttcaaggatgcgcccgtcttcggtcatcactactttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcgtgccaccatca                                                      <  1:46939‑M1/301‑248 (MQ=255)                                                                                                                                                                                                                                                                 ccccaccgtccaccttaaaaaccgttTTGCCAGCGCCGCCGTCTGCcgtcccctgcacttcactgatgcccccgtcttcggtcatcactcctttcctgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcgtgccaccatcagcctgaag                                              <  1:195991‑M1/289‑256 (MQ=255)                                                                                                                                                                                                                                                                 aCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatcactttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgtatctaccagcgccacgcaggcacccgtaatcgacgaggtagtcgtgacaccatccacctta                                                >  1:389011‑M1/1‑46 (MQ=255)                                                                                                                                                                                                                                                                      ccatcgcccttaaaatACAATTTCCCAGGCCCCCCTTCTGCcgtcccctgcccttcaattgtgcgcccgtctccggtcttctgtacgttcatgtcggtctctgcggcagagtcgtcaacgtattccagttcgcaaaccgctgcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcgtgccaccatcagcctgaagcacgt                                         <  2:262137‑M1/294‑261 (MQ=255)                                                                                                                                                                                                                                                                         gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaagcacccctaatcgacgcggtacgcgtgccaccatcagcctgaagcccgtcgc                                      >  1:278959‑M1/1‑38 (MQ=255)                                                                                                                                                                                                                                                                              cTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcacaaaccgctccgccgttcacaattccgacagaaactgcggctaccatccatttcatcggatgggttttcagcttgccgttttcccccagcttctgtagcgcatctaccagcgccacgcagccacccgtaatcgacgcgg                                                                       >  1:223368‑M1/1‑33 (MQ=255)                                                                                                                                                                                                                                                                               ttAAAAACCTGTTTGCCCTCCCCGCCTTCTGCcgtcccctgcacttcaaagctgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcgtgccaccatcagcctgaagcacgtcgcagtcc                                 <  1:4062‑M1/300‑269 (MQ=255)                                                                                                                                                                                                                                                                                  aaaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcccccgtaatcgacgcggtacgcgtgccaccatccgcctgaagcacgtcgcagtcccgcg                             >  1:202525‑M1/1‑29 (MQ=255)                                                                                                                                                                                                                                                                                       cAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcgtgccaccctcaacctgaagcacgtcgcagtccagcgtaatg                        >  1:252264‑M1/1‑24 (MQ=255)                                                                                                                                                                                                                                                                                        gggttaccagcgccGCCTTCTTCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgtttcccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcgtgccaccatcagcctgaagcacgtcgcagtccagcgtaatgg                       <  2:24707‑M1/295‑279 (MQ=255)                                                                                                                                                                                                                                                                                             ccccgcgccgccTTCTGCcgccccctgcacttacatgctgcgcccgtctccggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcccgatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcgtgccaccatcagcctgaagcacgtcgcagtccagcgtaatggtgaac                  <  2:278879‑M1/297‑284 (MQ=255)                                                                                                                                                                                                                                                                                                             gCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcgtgccaccatcagcctgcagcacgtcgcagtccagcgtaatggtgaactcacccagcgctttcc  >  1:345401‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                                                                                                             gCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcgacgcggtacgcgtgccaccatcagcctgaagcacgtcgcagtcccgcgtaatgcagaactcacccagcgctttc   >  1:413655‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                                            CAGGGCCAAACAGCAGATCGAACTCAATGCCGGAATCCACCAACGCTTCAGCGTAAAAACGGCCTAACAGTGCCAGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGG‑CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCC  >  NC_000913/3815558‑3816157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑