Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	1,907,242	IS5 (+) +4 bp	coding (191‑194/210 nt)	cspC ←	stress protein, member of the CspA‑family

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1397238	NA (NA)	42 (0.820)	37/572	0.3	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	1907242 =	0 (0.000)					coding (194/210 nt)	cspC	stress protein, member of the CspA‑family
*	?	NC_000913	= 1907245	0 (0.000)	52 (1.020)	42/572	0.2	100%	coding (191/210 nt)	cspC	stress protein, member of the CspA‑family
	?	NC_000913	= 2290113	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

TCGCATCATCAAGCGACAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTACAATATTCCGCTGTCTGAGTGGACGACATCAATGTATGTGATTC  >  NC_000913/1396948‑1397530                                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                     cagccacatccACCGACAGTCCGGGTGCGTGAAAGCCAGATACAAGGGGTGGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAAt                                                                                                                                                                                                                                                                                             <  1:261572/294‑1 (MQ=2)    aatcatcAAGCGACAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAAt                                                                                                                                                                                                                                                                                         <  2:20873/300‑1 (MQ=17)           aaGCGCCAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAACCGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGa                                                                                                                                                                                                                                                                                  <  2:220638/301‑1 (MQ=21)                     tCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATcc                                                                                                                                                                                                                                                                        >  2:371567/1‑301 (MQ=38)                       ggCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGATCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCAGCTTAGTCGAACTATCACTAACTAATTAATTCTTTATTTGGAAATcaac                                                                                                                                                                                                                                                                      >  2:110982/1‑298 (MQ=11)                        gcttaggaaaaGCCAGATCAAAGGGGTTGCTGAAAAACGCTAACCAACGGGCGATGTTATTCACGCTGGCCAACCAGTTTCGGGCGGACCAAATGTTACGTCAGGGGGAGAGATCTCACTAAAAACGGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGc                                                                                                                                                                                                                                                                     <  2:255697/293‑1 (MQ=14)                             gTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATACATGAGTCAGCCGAGAACACTTTCCCAGCTAATTCGCACCTTCCCCAACTAATCAACGTGTTGATATTAAATACAGCTa                                                                                                                                                                                                                                                                   >  1:292754/1‑298 (MQ=11)                              tGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAAGGCGTTGATTGTAAATCCAGCTAag                                                                                                                                                                                                                                                                 >  2:107782/1‑299 (MQ=255)                                   ggcAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCCATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAgaggtgag                                                                                                                                                                                                                                                          <  1:371470/299‑1 (MQ=255)                                           aaaGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGTGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCag                                                                                                                                                                                                                                                  <  2:292840/300‑1 (MQ=255)                                           aaaGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCag                                                                                                                                                                                                                                                  <  2:438609/300‑1 (MQ=255)                                             aGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGTGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGAGAAGAAACGGTCTAAATAGGCTGATTCAAGGCTTTTACGGGAGAAAAAACTGTCTCAAACATTAAGTCATGTAATGACTGAGTCAGCTGCGATGAATTTGCTCGCTTATTCGCACCTTCGCTCACTACTCAATGCGTTGATTGTAAATCCGGCTAAGAGGTGAGGTCTTCaga                                                                                                                                                                                                                                                 >  2:311176/1‑300 (MQ=14)                                                ggTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTCCCCTAACTAATCAATGCGTTAATTGTAATTCCAGCTAAGAGGTGAGGTTTACAGAGCa                                                                                                                                                                                                                                              >  1:30274/1‑300 (MQ=255)                                                       gAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGGGAGGTTTTCAGAGCAGACAACgg                                                                                                                                                                                                                                      >  2:380721/1‑301 (MQ=255)                                                                    cAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATgg                                                                                                                                                                                                                         <  2:264654/301‑1 (MQ=255)                                                                      aCTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGt                                                                                                                                                                                                                        >  2:399420/1‑300 (MQ=255)                                                                                ttATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGtt                                                                                                                                                                                                             >  2:294401/1‑301 (MQ=255)                                                                                 tATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCTGCTTATTCGCACCTTCCCTAACTAATCACTGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGAAGACAAGGGTGAAATGTCATGGTATTGTTACGttt                                                                                                                                                                                                            >  2:187340/1‑301 (MQ=255)                                                                                                aCCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGACTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTACTAATCAATGCGTTGCTTGTAAATCCAGATAAGAGGTGAGGATTTCAGAGCAGTAAACGGTGAAAGGACATGGTAATGTTTCGTTTAGGTAACAAGATAtt                                                                                                                                                                                             >  1:173289/1‑301 (MQ=17)                                                                                                    gttccgcgaggACCAAAAGATACGGCAGGGGGAGAAATCCCAAAAAAAACTGGGGATAACGCCTTAAATGGAGAAGAAACGGTATAAATAGGCTGAATCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTg                                                                                                                                                                                           <  1:353697/290‑1 (MQ=21)                                                                                                                  aaaaGATACTTAAATGGGAGAGATATCAACTGAAACGGGAGCGAAAGCATTAAATGGCGGAAAAACGGTCTAACAAGGCTGATTAAAGGCATTTACGGGAGAAAAAATCAGCTAAAACATGAAGAAATGAAATGACTGAGACAGCCGAGAAGAATTTCCCCTCTTATTCGCAACTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTAc                                                                                                                                                                           <  1:110955/301‑1 (MQ=255)                                                                                                                       agacttCAGTGAGAGAGAACTCACGACATACTGGGGACAACGCCTTAAATGGCGAAGAAACGGTCTCAAAAGGCTGATTCAATGCATTTACGTGAGAAAAAATCTGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTAcatcat                                                                                                                                                                      <  2:224671/296‑1 (MQ=25)                                                                                                                            tCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAACAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCACCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCACGCTAAGAGGTGAGGGTTTCAGACAAGACAACGGTGAAATGTCATGGTATTGTGTCGTTTAGGTACCATGACATTGTTCTGCACCAGTGTTACATACTGAtt                                                                                                                                                                  >  2:329742/1‑300 (MQ=18)                                                                                                                                 ggggGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAATGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGc                                                                                                                                                             <  1:294315/300‑1 (MQ=255)                                                                                                                                                       ggggATAACGCCTTAAAAGGCGAAAAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGga                                                                                                                                      <  1:107755/301‑1 (MQ=255)                                                                                                                                                                    tAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGAACCTTCCCTACCTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACAGCATGATCATGGCGAAACTGACGTCAGCGAAAGGGAATAAATTGCTAtt                                                                                                                         >  2:215542/1‑301 (MQ=255)                                                                                                                                                                         ggCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGtt                                                                                                                    <  2:30283/301‑1 (MQ=255)                                                                                                                                                                         ggCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCAGGATGATGTCGAAACTGAAGTCAGTGAAAGGGAAGAAATTTCACTTTGGtt                                                                                                                    >  1:108897/1‑301 (MQ=255)                                                                                                                                                                          gCGAAGAAAAGGTTTAAATAGGCTGATTCAAGGCAGTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGGAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGttt                                                                                                                   <  1:399319/301‑1 (MQ=255)                                                                                                                                                                                       cTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGACGTTAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTGTGGGGttttt                                                                                                      >  1:128871/1‑300 (MQ=255)                                                                                                                                                                                               gCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTCGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAAAAAATTCTATTTGGTTTGTTGGCGGGTTTAATTATTgg                                                                                              >  1:51505/1‑300 (MQ=255)                                                                                                                                                                                                        aagcagtaaagagagaAAATATCCGCTAGAACATAAAGAAATGAAATGACTGAGTCAGCCGAGAAGAAATTCCACGCTTATTCGAACCTTCCCTAACTAATTATTGCATTAATAGTAAATCCAGCTAATAGGTGAGGTTTTAAGAGCGGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGt                                                                                     <  2:355490/289‑1 (MQ=255)                                                                                                                                                                                                          gacataaaggggaacaaaaTCAGCTCAAGCAAGACTAAATGAAATTAATAAGTCAGCCGAGAAAAATTACCCCGCTGAGTTGCGACTTCCCTAACGAATCATTGCGTTGATTTTAAATCAAGCTAAGAGGGGAGGTTTTCAGAGCAGACAACGGTGAAAGGTCATGTGATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTtg                                                                                   <  1:456007/286‑1 (MQ=255)                                                                                                                                                                                                           cATTTACGGGAGAAAAAATCGGATCAAACATGAAGAAATGAAATGGCTGAGTCAGACGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTtgt                                                                                  <  1:380624/301‑1 (MQ=255)                                                                                                                                                                                                                     agaaaacacacgccccaaCATGAACCAAGTAAATGACTTAGTCAGCCCATAAGAATTTACTCGCTTATTCGCACCTTCCCTAACTAATCATTGCGTGGCGGCTAAATCCAGCTACGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCAGGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATGATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTGCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTcgcgcg                                                                        <  1:329650/285‑1 (MQ=255)                                                                                                                                                                                                                        aaaaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTTGATTGTTGTCGGTTTTCATTATTGCGGCGTCGGTTGTGATTCGCGCGAcc                                                                     >  1:377968/1‑301 (MQ=255)                                                                                                                                                                                                                                           aataaatgaaatgACTGAGTCAGCCAAGAAGAATTTCCCCGCTTATTCGAACCTTCCCTAACTAATCAATGCGTTGAATGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAAc                                                  <  1:187283/298‑1 (MQ=255)                                                                                                                                                                                                                                                atgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTTTTGGCGGTTTTCATTATTGCGGCGGCGGTTGTGACTCGCGCGACCATCGTCGGCGTTCTAGAACAgga                                              >  1:239664/1‑298 (MQ=255)                                                                                                                                                                                                                                                                 gCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCACTAACTAATCAATGCGTTGATTGTAAAGCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGAGAAAGAAAAGCAATTTCTCTGTGGTTTGTTGGCGGTTTTCATTATAGCGACGTCAGTTGTAACTAGCGCGAACCTCGAGGGCGTTATTGAAACGTACAATATTCCGATGTCTg                             >  2:424780/1‑300 (MQ=255)                                                                                                                                                                                                                                                                    ggaaagaaTTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAAGCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTACAATATTCCGCTGTCTGAGTg                         <  2:51521/298‑1 (MQ=255)                                                                                                                                                                                                                                                                    gagaAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTAcatc                                                                                                                                                                        >  1:199995/1‑158 (MQ=255)                                                                                                                                                                                                                                                                    gagaAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTAcatc                                                                                                                                                                        <  2:200056/158‑1 (MQ=255)                                                                                                                                                                                                                                                                                cccGCTTCTTCGTACCTTACTTAACTAATCTAAGCGTTGATTTGAAGTCCAGCTAAGAGGTGAGGATTACAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTACAATATTCCGCTGTCTGAGTGGACGACATCAat             <  2:173339/301‑1 (MQ=255)                                                                                                                                                                                                                                                                                           gCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATGATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTATTTGGTTTTTTGGCGGTTTTTATTATTGCGGCGTAGGTTGTGACTCGCGGGACAATCGGCGGCGTTATAGAACAGTAAAATATTCCGCTGTCTGAGTGGGGGACCAATATGTATGTGtttg  >  2:124036/1‑300 (MQ=255)                                                                                                                                                                                                                                                                                                   ccTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGATACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTGGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTACAATATTCCGCTGTCTGCGTGGACGACATTAATGTCtgtg      >  1:190978/1‑289 (MQ=255)                                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                     TCGCATCATCAAGCGACAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTACAATATTCCGCTGTCTGAGTGGACGACATCAATGTATGTGATTC  >  NC_000913/1396948‑1397530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.