New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2854549	50 (1.260)	3 (0.080)	3/254	NT	6.0%	intergenic (+247/+166)	USA300HOU_2696/rarD	DASS family divalent anion:sodium (Na+) symporter/DMT superfamily drug/metabolite transporter
	?	CP000730	= 2854587	46 (1.190)					intergenic (+285/+128)	USA300HOU_2696/rarD	DASS family divalent anion:sodium (Na+) symporter/DMT superfamily drug/metabolite transporter

AGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTATCTTTCCTCGTATTTTATAGGGTTTTT  >  CP000730/2854453‑2854727                                                                                                                                       |                                                                                                                                             aGTCATTACGTACCATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCTTCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGTGAATTCAACGAAAGTGCCt                                                                                                                                        <  2:258037/141‑1 (MQ=255) aGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCt                                                                                                                                        >  2:248679/1‑141 (MQ=255)       tACGAAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCAAATAAATGATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTc                                                                                                                                  <  1:337673/141‑1 (MQ=255)         cGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTGTTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTTTTTCat                                                                                                                                >  2:71067/1‑141 (MQ=255)          gTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCata                                                                                                                               <  2:149959/141‑1 (MQ=255)           tAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCatat                                                                                                                              >  2:274263/1‑141 (MQ=255)            aaCATCTCATAATATTCATTTCTGTACTATTCCGCTTTATGGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATAtt                                                                                                                             <  2:89489/141‑1 (MQ=255)                 cacaTATCATACATTTCTATACTATTCCGCTTCAATGATTACAATTACGTATGCCCTCATAAATCATCATACAAAAAACTCCTTCGTTTAAATTCATTTTAATTGCTAATTCAACGAAAGTGCCTTATTGCATATTTAATg                                                                                                                        <  2:310090/141‑1 (MQ=255)                        aaTACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCaaa                                                                                                                 <  1:346984/141‑1 (MQ=255)                        aaTACATTTCTATACTATTCCGCTTCATTGAGTAACATTACATGAATCAACGGGAGTCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCaaa                                                                                                                 <  1:333781/141‑1 (MQ=255)                          tACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAAtt                                                                                                               <  1:392205/141‑1 (MQ=255)                           aCATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAAttt                                                                                                              <  2:169495/141‑1 (MQ=255)                             tattCTATCCTATTCCGCTTCATGGATTAACTTTTCGTATCCCCTCATAAATCATCATAAAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTtat                                                                                                            <  2:35444/139‑1 (MQ=255)                              tttCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATGAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttgtttgtatgatgatttatgagggcatacgt                                                                                                           <  1:243070‑M2/141‑36 (MQ=255)                              tttCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTtata                                                                                                           >  2:28918/1‑141 (MQ=255)                                    aaatATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTg                                                                                                     <  2:70291/138‑1 (MQ=255)                                      cTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTc                                                                                                   >  1:346346/1‑141 (MQ=255)                                         ttCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACt                                                                                                <  2:70689/141‑1 (MQ=255)                                           ccGCTTCATTGATTAATATTACGTATGCCCTCATAAAACAACAAACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGt                                                                                              <  2:3590/141‑1 (MQ=255)                                              cTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTAc                                                                                           >  1:257525/1‑141 (MQ=255)                                                tCATTGATTAACATTACGTGTGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAACGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTgtcactgtcactc                                                                                         >  2:237328/1‑140 (MQ=255)                                                tCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACtc                                                                                         >  1:80296/1‑140 (MQ=255)                                                  aTTGATTAACATTACGTATTCCCTCATAAATCATCATACAAAAAACACCTTCGCTCAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTACATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGca                                                                                       <  2:252174/141‑1 (MQ=255)                                                       ttAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACAt                                                                                  >  1:169376/1‑141 (MQ=255)                                                             ttACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCa                                                                            >  1:214201/1‑141 (MQ=255)                                                               ccgTATCCCCTTATAAATCATCATACAAAAAACACCTTCGGTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttttttgtatgatgatttatgagggcatacgtaatgttaatcaatgaagcggaatagtatagaaa                                                                          >  2:243070‑M2/2‑73 (MQ=255)                                                                cGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGCATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCGGTACCTGTTACTCCACACATACCTccgct                                                                         >  2:8701/1‑137 (MQ=255)                                                                 gTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGtct                                                                        <  1:274263/141‑1 (MQ=255)                                                                        cTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCtca                                                                 <  1:78672/141‑1 (MQ=255)                                                                           aTAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCCCTCATGCCTCCGTCTCACCtcatcc                                                              >  1:36781/1‑140 (MQ=255)                                                                           aTAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCtcatca                                                              <  2:68205/141‑1 (MQ=255)                                                                              aaTCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGACTTCTTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTCCTGCACACATACCTCAGTATCACCTCATCATGa                                                           >  2:172173/1‑141 (MQ=255)                                                                                       aCAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGa                                                  >  2:219551/1‑141 (MQ=255)                                                                                       aCAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGa                                                  <  2:59260/141‑1 (MQ=255)                                                                                        cAAAAACCACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGat                                                 <  1:147148/141‑1 (MQ=255)                                                                                        cAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGat                                                 <  1:24382/141‑1 (MQ=255)                                                                                            aaaCACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAgtgttttttttttttttttttatgaggacatgcgtaatgttaatcaatgaagcggaatagtatagaaatgtattttatgtgaagttacgtaatgact                                             <  2:169191‑M2/141‑98 (MQ=255)                                                                                              acacCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaa                                           <  1:206380/141‑1 (MQ=255)                                                                                              acacCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaa                                           <  2:430124/141‑1 (MQ=255)                                                                                                acCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGaaaa                                         >  2:144271/1‑141 (MQ=255)                                                                                                acCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTAACCTCATCATGACACAAAGGATATTGaaca                                         >  2:364879/1‑139 (MQ=255)                                                                                                 ccTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAac                                        >  1:140683/1‑141 (MQ=255)                                                                                                  cTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTTCACACATACCTCAGTCTCACCTACTCATGACACAAAGGATGTTGAAAaca                                       >  2:369937/1‑141 (MQ=255)                                                                                                    tCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACg                                     <  1:459740/141‑1 (MQ=255)                                                                                                    tCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACg                                     <  1:459679/141‑1 (MQ=255)                                                                                                           aaTTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTCTAAtt                              >  1:150899/1‑141 (MQ=255)                                                                                                                aTTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCTTTTTTAGTGGTTCAAATTTATACGTCTGTCACTGTTACTGCACACATTCCTCTGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTATCtt                         <  1:197922/141‑1 (MQ=255)                                                                                                                aTTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAGGGATATTGAAAACACGTTTAATTCTCtt                         >  1:32454/1‑141 (MQ=255)                                                                                                                      aTTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTATCTTTCCTCg                   >  1:144372/1‑141 (MQ=255)                                                                                                                        tGCGAATTCAACGAAAGTGCCTTATTTCAAATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCAGCATGACACAAAGGATATTGAAAACACGTATAATTATCTTGCCTCGTa                 <  1:95010/141‑1 (MQ=255)                                                                                                                                  aCGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTCCCTTTCCTCGTATTTTATAggg       >  1:389025/1‑141 (MQ=255)                                                                                                                                       aGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTATCTTTCCTCGTATTTTATAGGGttttt  >  2:332478/1‑141 (MQ=255)                                                                                                                                       |                                                                                                                                             AGTCATTACGTAACATCACATAAAATACATTTCTATACTATTCCGCTTCATTGATTAACATTACGTATGCCCTCATAAATCATCATACAAAAAACACCTTCGTTTAAATTCATTTTAATTGCGAATTCAACGAAAGTGCCTTATTTCATATTTAATGTTTCAAATTTATACGTCTGTCACTGTTACTGCACACATACCTCAGTCTCACCTCATCATGACACAAAGGATATTGAAAACACGTATAATTATCTTTCCTCGTATTTTATAGGGTTTTT  >  CP000730/2854453‑2854727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.