New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 800928	68 (1.040)	6 (0.100)	5/246	NT	7.5%	intergenic (+62/‑289)	hisC1/USA300HOU_0748	histidinol‑phosphate transaminase/hypothetical protein
	?	CP000730	801948 =	83 (1.340)					intergenic (+189/+435)	USA300HOU_0748/dgkA1	hypothetical protein/possible diacylglycerol kinase

TAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATT  >  CP000730/801808‑802088                                                                                                                                             |                                                                                                                                             taAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACa                                                                                                                                              >  2:685042/1‑141 (MQ=255)   aaGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGCCAATGCAAGTTGGGATGGGCCCCAACATa                                                                                                                                            >  2:468504/1‑141 (MQ=255)      tAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAg                                                                                                                                         >  1:305442/1‑141 (MQ=255)       aaTTGTGACTGAGATGAACTTTTGTGTCGTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGa                                                                                                                                        >  2:538814/1‑141 (MQ=255)        aTTGTGACTGAGATGAACTTTTATGTCTTAAACACTACAACACTATATTGGCAGTAGTTGACTGAGGGGCCCCAACATCGGGAAATGGGAACGCCAAGTGCTACAGGCAAGGCAGATTGGGGTGGGCCCCAACATAAAGaa                                                                                                                                       >  2:364122/1‑141 (MQ=255)          tgtgACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGACCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAAt                                                                                                                                     >  1:526538/1‑141 (MQ=255)          tgtgACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGGTGGGGTGGGCCCCAACATAAAGAAAt                                                                                                                                     >  2:748134/1‑141 (MQ=255)             gattGAGATGATTCTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACt                                                                                                                                  <  2:545772/138‑1 (MQ=255)             gACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACt                                                                                                                                  <  2:430599/141‑1 (MQ=255)             gACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACt                                                                                                                                  >  1:160748/1‑141 (MQ=255)                 gagaTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACttttt                                                                                                                              >  2:627638/1‑141 (MQ=255)                  tggttttaaagaacaaaatgataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTc                                                                                                                             <  1:678102‑M2/18‑1 (MQ=255)                  agattagcgtttATGTCTGCGACACCACGCTACTATATTGGTAGTAGGTGACTGCGGGGCCCCAAGATAGAGAAATTGGAACGCCAATGTCGACAGACAATGCGAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTc                                                                                                                             <  2:666369/132‑1 (MQ=17)                     tGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCGCCAACATAAAGAAATACTTTTTCttt                                                                                                                          >  1:458203/1‑141 (MQ=255)                       aaCTTTTATGTCTTAGACACTACCCCCCCAAATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAg                                                                                                                        >  1:181490/1‑141 (MQ=21)                       aaCTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGCAATACTTTTTCTTTAg                                                                                                                        >  2:615285/1‑141 (MQ=255)                       aaCTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAg                                                                                                                        >  2:393454/1‑141 (MQ=255)                           tttATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTGGAAAt                                                                                                                    >  1:248494/1‑141 (MQ=255)                              ttggcTTAGACACTACAACACTATATTGGCAGTATTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGTCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAg                                                                                                                 <  2:589757/137‑1 (MQ=255)                              ttGTCTTAGACCCTACAACAATATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAg                                                                                                                 <  2:496689/140‑1 (MQ=255)                              aTGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAg                                                                                                                 <  1:296563/141‑1 (MQ=255)                               tGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGt                                                                                                                <  2:557760/141‑1 (MQ=255)                               tGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGt                                                                                                                >  2:434746/1‑141 (MQ=255)                               tGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTGTTTCTTTAGAAATTAGt                                                                                                                >  1:698819/1‑141 (MQ=255)                                   ttAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTAttt                                                                                                            >  1:286693/1‑141 (MQ=255)                                   ttAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTGCTTTAGAAATTAGTAttt                                                                                                            >  1:733713/1‑141 (MQ=255)                                     ggtcacTACAACACTATATGGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCt                                                                                                          <  2:437827/138‑1 (MQ=255)                                       aaaataaaacaCTACATATGTAGTAGTTGACTGCGGTTCCCCAACATAGAGAAATTGGGACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTa                                                                                                        <  2:521856/134‑1 (MQ=17)                                            acaacaCTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGACATACTTTTTCTTTAGAAATTAGTATTTCTTATGCAt                                                                                                   >  2:43220/1‑141 (MQ=255)                                             caacaCTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATg                                                                                                  >  2:421266/1‑141 (MQ=255)                                              aacaCTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGa                                                                                                 >  2:567034/1‑141 (MQ=255)                                               acacTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTCTGCATGAg                                                                                                >  1:37067/1‑141 (MQ=255)                                               acacTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAg                                                                                                <  1:45307/141‑1 (MQ=255)                                                 acTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtg                                                                                              <  1:235230/141‑1 (MQ=255)                                                  cTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTGGTATTTCTTCTGCATCAgtgt                                                                                             >  2:383510/1‑141 (MQ=255)                                                    atatTGGCAGTAGTTGACCGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgttaca                                                                                           <  1:533361/141‑5 (MQ=255)                                                     tatTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAAc                                                                                          >  2:606822/1‑141 (MQ=255)                                                         ggCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGAAACGCCAATTTCTACAGACAATGCAAGCTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGAACTTCACATGCATGAATGTaaaccat                                                                                      >  2:689979/1‑136 (MQ=17)                                                             gtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCAt                                                                                  >  1:19835/1‑141 (MQ=255)                                                               agtTGACTGCGGGGCCCCAACAAAGAGAAATTTGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTc                                                                                <  1:414467/141‑1 (MQ=255)                                                                gtTGACTGCGGGGCCCCAACATAGAGAAATTGGACCGCCAATTTCTACAGACACCAAATCTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCa                                                                               <  1:748134/141‑1 (MQ=18)                                                                  ttaCTGCGGGGCCCCAACCTAGAGAACTTGGCACGCAAGTTACTACAGACCGTGCGCTTTGGGCCGCCCCTGGCCGGAAAGAAATACTTGTTCGTGAGAAATTAGTAGTGCTTATGCATGAGTGTAACTCATGCATTCata                                                                             <  2:178637/139‑1 (MQ=255)                                                                   gACTGCGGGGCCCCAAGATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCatat                                                                            >  1:450089/1‑141 (MQ=255)                                                                   gACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCatat                                                                            >  1:564938/1‑141 (MQ=255)                                                                    aCTGCGGGGCCCCAAGCTAGAGAAATTGGAACGCCAAGTTTTACTGACGATGCGAGTTTGGGTGGGTCCCAAGATAAAGAAATACTTTTTCTCTAGAAATTTGTATTTCTTATGCATGAGTGTACCTCATGCATTCATAtt                                                                           <  2:115929/141‑1 (MQ=255)                                                                    aCTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATAtt                                                                           >  1:604029/1‑141 (MQ=255)                                                                     cTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATAttt                                                                          >  1:223864/1‑141 (MQ=255)                                                                     cTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATAttt                                                                          >  1:223735/1‑141 (MQ=255)                                                                      tacgaatagtaagtggggggtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTCTAGAAATTGGTATTTCTTTTGCATGAGTGTAACTCATGCATTCATAtttt                                                                         >  1:286912‑M2/72‑141 (MQ=255)                                                                      tGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATAtttt                                                                         <  2:91892/141‑1 (MQ=255)                                                                          gggCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAg                                                                     <  2:487035/141‑1 (MQ=255)                                                                           ggCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGt                                                                    <  1:201773/141‑1 (MQ=255)                                                                               ccAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTacac                                                                <  2:526538/141‑1 (MQ=255)                                                                               ccAACATAGAGAAATTGGAACCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGGAACTCATGCATTCATATTTTTAAGTacac                                                                <  1:110181/141‑1 (MQ=255)                                                                                cAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCTACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTAcaca                                                               <  2:499061/141‑1 (MQ=255)                                                                                 aaCATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACAt                                                              >  1:70818/1‑141 (MQ=255)                                                                                 aaCATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACAt                                                              <  1:654951/141‑1 (MQ=255)                                                                                 aaCATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACAt                                                              <  1:685042/141‑1 (MQ=255)                                                                                 aaCATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACAt                                                              <  1:275300/141‑1 (MQ=255)                                                                                  aCATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACAtt                                                             <  2:305442/141‑1 (MQ=255)                                                                                        agtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCtgt                                                       <  2:257393‑M2/88‑1 (MQ=255)                                                                                        agtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCtgt                                                       <  2:436841‑M2/88‑1 (MQ=255)                                                                                         gaAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCtgtg                                                      >  1:349751/1‑141 (MQ=255)                                                                                           gggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaaaATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGAc                                                    <  2:568932‑M2/91‑1 (MQ=255)                                                                                             ttGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTa                                                  >  2:382849/1‑141 (MQ=255)                                                                                               ggcgttccAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAAt                                                >  2:55816/7‑141 (MQ=255)                                                                                                 aaCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGa                                              >  1:301816/1‑141 (MQ=255)                                                                                                 aaCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTATGACTAATGa                                              <  1:583719/141‑1 (MQ=255)                                                                                                  aCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGAt                                             <  2:747281/141‑1 (MQ=255)                                                                                                     cccaTTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATaaa                                          <  1:14883/138‑1 (MQ=255)                                                                                                     ccAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATaaa                                          <  1:627638/141‑1 (MQ=255)                                                                                                         tttCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTAAACCTTACGTGTGACTAATGATAAAGAAt                                      <  2:735795/141‑1 (MQ=255)                                                                                                           tttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCg                                    <  1:564087‑M2/107‑1 (MQ=255)                                                                                                           tCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTGTTTCTTGAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCg                                    <  2:522819/141‑1 (MQ=255)                                                                                                           ccTACCGACAATGCAAGTTAGGGTAGGCCCCAACATAAAGAAACACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCg                                    <  1:632466/140‑1 (MQ=255)                                                                                                            cTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGc                                   <  1:393454/141‑1 (MQ=255)                                                                                                               cAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTAc                                <  1:59878/141‑1 (MQ=255)                                                                                                                  aCAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATa                             >  1:539355/1‑141 (MQ=255)                                                                                                                  aCAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATa                             >  1:659991/1‑141 (MQ=255)                                                                                                                    aaTGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAAAAATTAGTAGATCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTGCACATTAGCTGTGACTAATGATAAAGAATCCCTAAATaca                           >  2:170643/1‑139 (MQ=18)                                                                                                                         aaGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATaatcaatc                      <  2:171236/141‑1 (MQ=255)                                                                                                                           gTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTATGTTCACATTTGCTGTGACTAATGATAAAGAATCCCTACATaatcaatcct                    >  2:277480/1‑139 (MQ=255)                                                                                                                           gTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCTCTACATAATCAATCAt                    <  1:421266/141‑1 (MQ=255)                                                                                                                           gTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCAt                    >  1:435346/1‑141 (MQ=255)                                                                                                                           gTTGGGGTGGGCCCCAACATAAAGAAATACTGCGTATTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCAt                    >  2:196544/1‑141 (MQ=255)                                                                                                                           gTTGGGGTGGGCACCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCAt                    <  1:468504/141‑1 (MQ=255)                                                                                                                             tggggtggggCCCAACAAAAAGAGATACTGTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCAGATTTGTAAGTACACGTTAGCTGTGAGTAATGTTAAAGGAGCGCTACGTAATCAATCATTa                  <  2:613905/141‑1 (MQ=18)                                                                                                                              gtggggggCCCCAACCTAAAGCAATACTTGTTCTTTATAAACTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAg                 <  2:306666/136‑1 (MQ=18)                                                                                                                              ggggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATAAAACATAAg                 >  2:154199/1‑141 (MQ=255)                                                                                                                              ggggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAATAAAAATTAGCTGTGACTACTGAAAAAGCATCGCTACATAATGAAACAATat                 >  1:670396/1‑140 (MQ=17)                                                                                                                               gggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGt                <  1:538814/141‑1 (MQ=255)                                                                                                                                ggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATAATCTACCATTGTTACATAATCAATCATTAGtt               >  2:340664/1‑140 (MQ=18)                                                                                                                                             aTAAAGAAATACTTTTTCTTGAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGTTACATAATCAATCATTAGTCGTTATTTATCAtt  <  2:681606/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             TAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATT  >  CP000730/801808‑802088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.