BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2085296 =	64 (0.920)	31 (0.500)	24/232	NT	36.5%	intergenic (‑558/‑400)	mapW2/USA300HOU_1944	cell surface protein MapW2/hypothetical protein
*	?	CP000730	= 2128343	51 (0.820)	31 (0.500)	24/232	NT	36.5%	intergenic (+57/+1062)	int/USA300HOU_2011	bacteriophage integrase/possible leukocidin subunit

Only 100 of 114 total aligned reads displayed.

AAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT  >  CP000730/2085158‑2085434

acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                          <  2:660756‑M1/3‑1 (MQ=255)

acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttataTGt                                                                                                                                          <  1:379703‑M1/3‑1 (MQ=255)

acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttaggaacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                          <  2:665030‑M1/3‑1 (MQ=255)

  atccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTAt                                                                                                                                        <  2:416526‑M1/5‑1 (MQ=255)

      gtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaa                                                                                                                                    >  1:2947‑M1/133‑141 (MQ=255)

       tgtattttcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaaa                                                                                                                                   >  2:717586‑M1/132‑141 (MQ=255)

       tgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaaa                                                                                                                                   <  1:290006‑M1/10‑1 (MQ=255)

       ctcactctcatttgttagaagaaaaatttaaagataaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccagtagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaaa                                                                                                                                   >  1:179511‑M1/132‑141 (MQ=255)

        gtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAAc                                                                                                                                  >  1:376011‑M1/131‑141 (MQ=255)

        gtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAAc                                                                                                                                  >  1:13354‑M1/131‑141 (MQ=255)

          attctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactcccaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTg                                                                                                                                <  1:96081‑M1/13‑1 (MQ=255)

          attctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTg                                                                                                                                <  1:808509‑M1/13‑1 (MQ=255)

          attctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTg                                                                                                                                <  1:133524‑M1/13‑1 (MQ=255)

          attctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattatagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgtggtgacaaggtttctaTGTATCCAaacgg                                                                                                                                <  1:645008‑M1/13‑3 (MQ=255)

           ttctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttaggaacacattagggaccccaaaaccaataaatactgttgttacaaggtttataTGTATCCAAAATgg                                                                                                                               <  2:585387‑M1/14‑1 (MQ=255)

                    ttAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTa                                                                                                                      >  2:543701/1‑141 (MQ=255)

                    gtcagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTa                                                                                                                      >  1:503480‑M1/119‑141 (MQ=255)

                       gCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACa                                                                                                                   <  2:166761/141‑1 (MQ=255)

                       agaagaaaaatttaatgaagaggacaaaaaaaccacgaagatgccacaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACa                                                                                                                   >  1:623577‑M1/116‑141 (MQ=255)

                       agaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctcTGTATCCAAACTGGAGACTTTTAACa                                                                                                                   >  1:595781‑M1/116‑141 (MQ=255)

                        cAAATTTATTATTAGTTTGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACAt                                                                                                                  <  2:419235/141‑1 (MQ=255)

                        cAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTACCaa                                                                                                                  >  1:180796/1‑140 (MQ=255)

                        cAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACAt                                                                                                                  >  1:412158/1‑141 (MQ=255)

                        cAAAGTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAACCTGGAGACTTTTAACAt                                                                                                                  <  1:581179/141‑1 (MQ=255)

                         aaaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATa                                                                                                                 <  2:295566/141‑1 (MQ=255)

                         aaaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATa                                                                                                                 <  1:119700/141‑1 (MQ=255)

                           gaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATaaa                                                                                                               <  1:725339‑M1/30‑1 (MQ=255)

                                ttattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                          <  2:801653/141‑1 (MQ=255)

                                ttattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                          <  1:683699/141‑1 (MQ=255)

                                ttattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                          <  2:118959/141‑1 (MQ=255)

                                 tttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACt                                                                                                         <  2:6477‑M1/36‑1 (MQ=255)

                                    aatgaagaggacaaaaaaacaactaaaattttagaaagcatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAt                                                                                                      <  2:763919‑M1/39‑1 (MQ=255)

                                     aGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATCTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                     <  2:510109/141‑1 (MQ=255)

                                     aGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAAGATAAAATTACTTATc                                                                                                     <  2:764130/141‑1 (MQ=255)

                                     aGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                     <  2:682921/141‑1 (MQ=255)

                                       ttGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCAt                                                                                                   <  2:575964/141‑1 (MQ=255)

                                        aagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCAtt                                                                                                  >  1:155429‑M1/99‑141 (MQ=255)

                                           tGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGCCTTTTCACATAAAATTACTTATCATTCaa                                                                                               >  1:218933/1‑141 (MQ=255)

                                            gCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAACCTGGAGACTTTTAACATAAAATTACTTAGCATTCaaa                                                                                              >  1:205057/1‑141 (MQ=255)

                                               cctACTGACGCTAGGGCCAAAGCCGAATCTAAGAAAGAGGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                           >  2:274319/3‑141 (MQ=255)

                                                aaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGAGTTTTAACATAAAATTACTTATATTTCAAAAAGt                                                                                          <  2:452803‑M1/51‑1 (MQ=255)

                                                 aaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTa                                                                                         >  2:230445‑M1/90‑141 (MQ=255)

                                                   cTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaa                                                                                       >  2:112569/1‑141 (MQ=255)

                                                        aactaaagttttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGc                                                                                  >  2:290006‑M1/83‑141 (MQ=255)

                                                              gCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataata                                                                            <  1:202801/141‑1 (MQ=255)

                                                              gCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataata                                                                            <  2:70879/141‑1 (MQ=255)

                                                               ccAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAatat                                                                           >  1:673506/1‑141 (MQ=255)

                                                                cAAAGCCCAATCGAAAAAAGATGATACTGAATTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTGACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATc                                                                          <  1:369741/141‑1 (MQ=255)

                                                                    gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCACAAAGTAAAACAGCATAATATCACgg                                                                      >  2:200251/1‑141 (MQ=255)

                                                                    gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg                                                                      >  2:338173/1‑141 (MQ=255)

                                                                     gaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                     >  2:21020‑M1/70‑141 (MQ=255)

                                                                     gaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                     >  2:361961‑M1/70‑141 (MQ=255)

                                                                      cGAATCTAATAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGtt                                                                    <  1:256696/141‑1 (MQ=255)

                                                                      cGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGTAGACTTTTAACATAAAATTACTTATCATCCAAAAAGTAAACCAGCCtattattatttct                                                                    <  2:416640/141‑8 (MQ=255)

                                                                      cGAAGCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATCTGTTATCGACCGTTTTGGATCCAAACTGGAGACCTTTAACAGAAAATTACTGATCATTCAAAAAGTAAAACAGCATAATATCAAGGtt                                                                    <  2:360217/141‑1 (MQ=255)

                                                                         aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                 <  2:441312/141‑1 (MQ=255)

                                                                                   gatgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTACAACAGCATAATATCAACGTTTATAACTagatca                                                       >  1:788136/1‑141 (MQ=255)

                                                                                     tgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatt                                                     >  2:24478/1‑141 (MQ=255)

                                                                                     tgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatt                                                     >  2:496516/1‑141 (MQ=255)

                                                                                     tgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTAAAAAAGTAAAACAGAATAATATCTAGGTTTATGACtatgacatt                                                     >  2:769322/1‑133 (MQ=255)

                                                                                      ggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatta                                                    <  2:92134‑M1/89‑1 (MQ=255)

                                                                                      gatACTGGTTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatta                                                    >  1:519296/1‑141 (MQ=255)

                                                                                      gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatta                                                    >  2:230914/1‑141 (MQ=255)

                                                                                      gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatta                                                    >  1:36569/1‑141 (MQ=255)

                                                                                      gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatta                                                    >  1:557654/1‑141 (MQ=255)

                                                                                        cccccttagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc                                                  >  1:418900‑M1/51‑141 (MQ=255)

                                                                                        acccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc                                                  >  1:658537‑M1/51‑141 (MQ=255)

                                                                                        acccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATGCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc                                                  >  1:400142‑M1/51‑141 (MQ=255)

                                                                                         cccattagggactccaaacccaataaatactgttgttacaaggattctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcagtatca                                                 <  2:327737‑M1/92‑1 (MQ=255)

                                                                                         aCTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatca                                                 <  1:660116/141‑1 (MQ=255)

                                                                                             ttagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataa                                             <  1:711593‑M1/96‑1 (MQ=255)

                                                                                              tatggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat                                            >  2:85830‑M1/45‑141 (MQ=255)

                                                                                              tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGGCTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTCTAACTTTATCATTATCaataat                                            <  1:70206‑M1/97‑1 (MQ=255)

                                                                                              taggcactccaaacccaataaatactgttgttacaatgttactaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCATAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat                                            >  1:500771‑M1/45‑141 (MQ=255)

                                                                                               ttGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAataata                                           >  1:161639/1‑141 (MQ=255)

                                                                                                 gAAGTTAGTTAGTCATAAGGATTATATGTTATCGACCGTTTAGTATCCAAACTAGAGACTTTTAACATAAAATTAAAAAAAAAACAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAcc                                         <  2:169396/141‑1 (MQ=255)

                                                                                                    gttagttaGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAAAAGAATAATATCAAGGTTTATAAATTTATCATTATCAATAATAACTCa                                      >  2:204637/1‑141 (MQ=255)

                                                                                                    gttagttaGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTGTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCa                                      >  1:314238/1‑141 (MQ=255)

                                                                                                     ttagttagTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCATGGCTTATAGCTTTATCATTATCACTAATACCTCat                                     >  2:562406/1‑141 (MQ=255)

                                                                                                     ttagttagTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCat                                     >  2:562404/1‑141 (MQ=255)

                                                                                                          acccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaa                                <  1:529037‑M1/109‑1 (MQ=255)

                                                                                                          acccaataaatactattgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaa                                <  1:529239‑M1/109‑1 (MQ=255)

                                                                                                            gtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaat                              <  2:773363/141‑1 (MQ=255)

                                                                                                                  aCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATAtaacaaaaaagt                        >  2:563573/1‑139 (MQ=255)

                                                                                                                     actgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTAGAACTTTATCATTATCAATAATACCTCATATAAAATACAattttt                     <  1:502413‑M1/120‑2 (MQ=255)

                                                                                                                      ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                    >  1:178570/1‑141 (MQ=255)

                                                                                                                      ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                    >  1:436826/1‑141 (MQ=255)

                                                                                                                      ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATAAATAATACCTCATATAAAATAAAGttctag                    >  1:786291/1‑141 (MQ=255)

                                                                                                                      ctgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                    >  1:208774‑M1/21‑141 (MQ=255)

                                                                                                                        atatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggg                  >  1:259349/1‑141 (MQ=255)

                                                                                                                           tGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact               >  1:308252/1‑141 (MQ=255)

                                                                                                                           tGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact               >  2:716548/1‑141 (MQ=255)

                                                                                                                               caaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttttt           <  1:358361‑M1/130‑1 (MQ=255)

                                                                                                                                 cGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttat         <  1:150843/141‑2 (MQ=255)

                                                                                                                                 aggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttag         <  1:598385‑M1/132‑1 (MQ=255)

                                                                                                                                 aggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAACATCAAGGTTTATAAATTAATCATTATCAATAATACCTCATATAAAATAAAAtattggtgactttttag         <  1:107623‑M1/132‑1 (MQ=255)

                                                                                                                                  gACCGTTTTGTATCGAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagg        <  1:115361/141‑1 (MQ=255)

                                                                                                                                   aCCGTTTTGTAGCCAAACTGGAGACTTTTAACATAAAATTACTTGTCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACCTCATCATTATCAATAATAACACATATAAAATAAAAatttatagactttttagta       >  2:186190/1‑139 (MQ=255)

                                                                                                                                        tttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCCCCTATCAAATAAAATTttagggactttttagggacttt  >  2:460445/1‑141 (MQ=255)

                                                                                                                                        taTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTttagggactttttagggacttt  <  1:55652‑M1/139‑1 (MQ=255)

AAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT  >  CP000730/2085158‑2085434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.