New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 120532363 (0.980)3 (0.050)
+AGCGAA		 3/248 NT 6.2% intergenic (+459/‑365) USA300HOU_1131/lspA possible lactoylglutathione lyase/A8 family signal peptidase II
?CP000730 = 1893309 33 (0.510)intergenic (‑1303/+177) rot/USA300HOU_1755 repressor of toxins Rot/lysophospholipase

TACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1205239‑1205323
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTGAAAAAATAAGACATTTTTCCCAACTTGCACATAAATGTAAAATTCAATAAAATGAATTTTCTGTGTTGGGTCCCTTCGT  <  CP000730/1893309‑1893183
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TACATGTTAATACGTAGTATTGATGGCGAGACTTCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTGA                                                                                >  2:507450/1‑141
                          CGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTACATACTTTGAAAAAATAAGACATTTTTCCCAACTTGC                                                     >  1:589907/1‑141
                                                                              CTAGGAAAGCGAAGCCATTCAATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTGAAAAAATAAGACATTTTTCCCAACTTGCACATAAATGTAAAATTCAATAAAATGAATTTTCTGTGTTGGGTCCCTTCGT  <  1:507450/141‑1
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TACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1205239‑1205323
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTGAAAAAATAAGACATTTTTCCCAACTTGCACATAAATGTAAAATTCAATAAAATGAATTTTCTGTGTTGGGTCCCTTCGT  <  CP000730/1893309‑1893183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.