Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 279,564 C→T 3.8% G211S (GGC→AGC)  USA300HOU_0246 ← ABC superfamily ATP binding cassette transporter, binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730279,5640CT 3.8% 329.2 / 2.3 108G211S (GGC→AGC) USA300HOU_0246ABC superfamily ATP binding cassette transporter, binding protein
Reads supporting (aligned to +/- strand):  ref base C (42/60);  new base T (2/2);  total (45/63)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.25e-01

Only 100 of 109 total aligned reads displayed.

TAAGTAAAGAAGTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCAACAGGAGTTTGATTAA  >  CP000730/279426‑279704
                                                                                                                                           |                                                                                                                                            
tAAGTAAAGAAGTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATAAGTTATTAAATCATCTTTTTGCGATTCTAAATTTATGACGCGATTATTGCCGt                                                                                                                                            >  2:863724/1‑141 (MQ=255)
aaaGTAAAGAAGTCCTAAATCCAGATTCTTTTGACCCTTTTAAATTTTGCTTATTTTCTCCGTCTTGAACTTTATCAACTGGGACATCAGTTATTAAATCATCTTTTCGAGATTCTAAATTTCTGACGCGATTATTGCCGt                                                                                                                                            <  1:247735/140‑1 (MQ=255)
 aaGTAAAGAAGTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGtc                                                                                                                                           >  1:643750/1‑141 (MQ=255)
  aGTAAAGAAGTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGAGTCTATATTTCCCACGCGATTATTGCCGtct                                                                                                                                          <  2:905266/141‑1 (MQ=255)
  aGTAAAGAAGTTCTAAATCCAGATTCTTTTGACACTTTTAAATGTTGATTTTTTTCTATGTCTTGAACTTTATTAACTGGCACCTCAGTTATTAAATCATCTTTTTGAGATTCTTACTTTCTGACGCGCGTATTGCCGtct                                                                                                                                          >  2:723771/1‑141 (MQ=255)
    tAAAGAAGTTCTAAATCCAGATTCTTTTTGCACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGtcttc                                                                                                                                        <  2:14768/141‑1 (MQ=255)
      aagaagTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTcttctt                                                                                                                                      <  2:423690/141‑1 (MQ=255)
      aagaagTTCTAAATCCAGATTCTTTTGACACCTTTAAATTTTGATTATTTTCTATGTCTTGCACTTTAGTAACTTGGACAACAGTTATTAAATCATCTTTTTGAGATTCTACATTTCTGACGCGATTATTGCCGTcttctt                                                                                                                                      <  2:424209/141‑1 (MQ=255)
       agaagTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCTGTCTTCTTg                                                                                                                                     >  1:713784/1‑141 (MQ=255)
       agaagTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCTGTCTTCTTg                                                                                                                                     >  1:13644/1‑141 (MQ=255)
       agaagTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTg                                                                                                                                     <  1:1009219/141‑1 (MQ=255)
         gagTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGCCGGGATTAGTGCCGTTTTCTTGGt                                                                                                                                   >  2:497106/2‑141 (MQ=255)
         aagTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGt                                                                                                                                   <  2:804799/141‑1 (MQ=255)
         aagTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGt                                                                                                                                   >  2:801775/1‑141 (MQ=255)
              cTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTAGGTc                                                                                                                              >  2:414466/1‑141 (MQ=255)
               tAAATTCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTca                                                                                                                             <  1:67843/141‑1 (MQ=255)
                 aaTCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGTCGTCTTCTTGGTACGTcaca                                                                                                                           <  1:754131/141‑1 (MQ=255)
                 aaTCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTcacc                                                                                                                           >  1:185016/1‑140 (MQ=255)
                    ccAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGGTTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTa                                                                                                                        >  1:76910/1‑141 (MQ=255)
                    ccAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATGATTGCCGTCTTATTGGTACGTCACAgca                                                                                                                        >  2:1180784/1‑139 (MQ=255)
                     cAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTACCTATCGTTTCTAAGAGTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTaa                                                                                                                       >  1:567506/1‑141 (MQ=255)
                     cAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGTTACGTCACAGTaa                                                                                                                       >  1:1152462/1‑141 (MQ=255)
                     cAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTaa                                                                                                                       <  2:143622/141‑1 (MQ=255)
                     cAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTaa                                                                                                                       >  1:1160011/1‑141 (MQ=255)
                     cAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTaa                                                                                                                       >  1:472366/1‑141 (MQ=255)
                            ttttGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATc                                                                                                                <  1:86278/141‑1 (MQ=255)
                              ttGACACTTTTAAATTTTGATTCTCATAAATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTACTATGATCaa                                                                                                              >  2:547929/1‑141 (MQ=255)
                                 acacTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGtt                                                                                                           <  1:601769/141‑1 (MQ=255)
                                 acacTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGtt                                                                                                           <  1:686969/141‑1 (MQ=255)
                                 acacTTTTAAATTTTGATTATTTTCTATGGCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGtt                                                                                                           <  1:539034/141‑1 (MQ=255)
                                  catttttAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGCACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGttt                                                                                                          <  1:974251/138‑1 (MQ=255)
                                    cTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCg                                                                                                        <  1:70493/141‑1 (MQ=255)
                                     ttttAAATTTTGGTTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCgg                                                                                                       <  2:671703/141‑1 (MQ=255)
                                      tttAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGt                                                                                                      <  2:1189834/141‑1 (MQ=255)
                                         acaTTTTGATTATTTTTTATGCCCTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTa                                                                                                   <  2:1129952/139‑1 (MQ=255)
                                          aaTTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTACCGTCTTCTTGGTACGTCACAGTAATATGATCAACTTTCGGTTTAc                                                                                                  >  1:992421/1‑141 (MQ=255)
                                           aTTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTAcc                                                                                                 <  1:527031/141‑1 (MQ=255)
                                            ttttGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCt                                                                                                >  1:907403/1‑141 (MQ=255)
                                              ttGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTg                                                                                              <  1:152554/141‑1 (MQ=255)
                                              ttGATTATTTTCTATGTCCTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTg                                                                                              <  2:239134/141‑1 (MQ=255)
                                              ttGATTATTTTCTATCTTTTGAACTTTATTAACTGGGACATCAGTTATTAAATCCTCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTg                                                                                              <  2:390794/141‑1 (MQ=255)
                                               tgcttattTTTTTTTTTTTGAACTTTATTAACTTGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGc                                                                                             <  1:555709/138‑1 (MQ=255)
                                                     ttttCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTTTTTTTTTTTATTTCTGACGCGATTATTGCCGTGTTCTTGGTACGTCACCGTGATATGATCCAGTTTCGGTTTAACtttcttttat                                                                                       >  2:345/1‑133 (MQ=255)
                                                       ttttATGTCTTGAACTTTATTAACTGGGAAATCAGTTATTAAATCATCTTTGTGAGATTCTAAATTGCTGACGCGCTTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTc                                                                                     <  2:66188/138‑1 (MQ=255)
                                                          tATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCtt                                                                                  <  1:223509/141‑1 (MQ=255)
                                                            tGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTCCCGTCTTCTTGGTACGTCACAGTAATATGAACAAGTTTCGGTTTACCTTGCCACTATTCCTTaa                                                                                >  2:24570/1‑141 (MQ=255)
                                                                  gAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCg                                                                          <  1:835409/141‑1 (MQ=255)
                                                                    aCTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGAc                                                                        >  2:164934/1‑141 (MQ=255)
                                                                       ttattaACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGGCGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATGGTCCTTAAAATTCGAAAAt                                                                     >  2:69651/1‑141 (MQ=255)
                                                                       ttattaACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTCAAATTCGACAAt                                                                     >  1:1069583/1‑141 (MQ=255)
                                                                       ttattaACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTATGACGCGATTATTGCCGTCTTCTTGGTTCGTCACAGTCTTATGTTGAAGTTTCGGTTTGCGTTGCCAATAGCGCTTaaccttcaatagt                                                                     >  1:749817/1‑130 (MQ=255)
                                                                         attaACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCACGTTTCGGTTTACCTTGCCAATAGTCCTTAACATTCGCCAATGa                                                                   >  1:112575/1‑141 (MQ=255)
                                                                         attaACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGa                                                                   >  1:1028996/1‑141 (MQ=255)
                                                                              cTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATAttt                                                              <  2:643750/141‑1 (MQ=255)
                                                                               tGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATAtttt                                                             <  1:848795/141‑1 (MQ=255)
                                                                               tGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATAtttt                                                             >  1:538540/1‑141 (MQ=255)
                                                                               tGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATAtttt                                                             <  1:347015/141‑1 (MQ=255)
                                                                               tGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATAtttt                                                             <  1:128670/141‑1 (MQ=255)
                                                                                gggACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATAttttt                                                            <  2:799561/141‑1 (MQ=255)
                                                                                 gtaCATCAGTTATTAAATCATCTTTTTGAGATTCTAAATGTCTGACGCGATTATTGCCTTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTc                                                           <  1:998930/139‑1 (MQ=255)
                                                                                 ggACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTGCCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTc                                                           <  1:457547/141‑1 (MQ=255)
                                                                                  gACATCTGTTATTAAATCATCTTTTTGAGATTTTAAATGTCCCACGCGGTTATTGCGGTATTGTTGCTACGTCACGGTAACATGATCAAGTTACGTTTTACCTTGCTAGTGGTCCTTAAAATTCGTGAATGATAttttttg                                                          <  2:528275/141‑3 (MQ=255)
                                                                                  gACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCg                                                          <  1:985149/141‑1 (MQ=255)
                                                                                  gACATACGTTATTAAATCATCTTTTGGAGATTCTAAATTGCTGACGCAATTATTCCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTATACAATAGTCTTTAAAATTCGACAATGATATTTTTCg                                                          <  2:138482/141‑1 (MQ=255)
                                                                                     aTCAGTTATTAAATCATCTTTTTTTTTTTTTTTATATCTGACGCCATTATTCCCGTCTGCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTAGACAATGATATTTTTcttgt                                                       >  2:575947/1‑137 (MQ=255)
                                                                                      tCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGAt                                                      >  1:941164/1‑141 (MQ=255)
                                                                                        aGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTACTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTg                                                    <  1:45777/141‑1 (MQ=255)
                                                                                        aGTTATTAAAGCATGTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTg                                                    <  1:171364/141‑1 (MQ=255)
                                                                                         gTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTgt                                                   >  2:724885/1‑140 (MQ=255)
                                                                                           tattaAATCATCCTTTTGCGATTCGGGTTTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGCTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCtt                                                 <  1:23392/141‑1 (MQ=255)
                                                                                            attaAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGGTCAAGTTTCGGTTTACCTTGCCAATAGTCCTTCAAATTTGACAATACTGtttttgcaggtttctgt                                                >  2:266636/1‑129 (MQ=255)
                                                                                            attaAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCttt                                                >  2:737235/1‑140 (MQ=255)
                                                                                                 atcatcTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATc                                           >  1:195877/1‑141 (MQ=255)
                                                                                                    ctcTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCttt                                        <  1:1030548/140‑1 (MQ=255)
                                                                                                     tcTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCtttt                                       <  2:627539/141‑1 (MQ=255)
                                                                                                     atcatgatGAGATTCTAAATTTCTGACGCGATTATTAACGTATTCTTAATACGTCACAGTAATATGATCTAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCttt                                        <  1:418659/134‑1 (MQ=255)
                                                                                                        tttttGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTAt                                     <  1:248305/141‑1 (MQ=255)
                                                                                                          tttGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTAttt                                   >  1:93968/1‑141 (MQ=255)
                                                                                                                 ttCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAgg                            >  1:1038952/1‑141 (MQ=255)
                                                                                                                 ttCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAgg                            >  1:926285/1‑141 (MQ=255)
                                                                                                                 ttCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCGTAAAATTCGACAATGATATTTTCCGAGATTGCTTATAATCTTTTATTTGGTAAgg                            <  1:816914/141‑1 (MQ=255)
                                                                                                                    tataTTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGcc                         <  2:194240/138‑1 (MQ=255)
                                                                                                                     aaaTTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGccc                        >  2:414631/1‑140 (MQ=255)
                                                                                                                     aaaTTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCt                        <  2:944467/141‑1 (MQ=255)
                                                                                                                     aaaTTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCt                        >  1:85396/1‑141 (MQ=255)
                                                                                                                        tttCTGACTCGATTATTGCTGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTa                     <  2:13644/141‑1 (MQ=255)
                                                                                                                            tGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCaa                 >  1:202820/1‑141 (MQ=255)
                                                                                                                             gACGCGATTATTGCCGTCTTCTTGGTACCTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCAAc                <  2:538540/141‑1 (MQ=255)
                                                                                                                              aCGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCAACa               <  1:991364/141‑1 (MQ=255)
                                                                                                                               cgcgATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGCTTGCTTTTAATCTTTTATTTGGTAAGGGCCGGTGCcagcag              >  2:232665/1‑141 (MQ=255)
                                                                                                                                gcgATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCAACAgg             <  2:696170/141‑1 (MQ=255)
                                                                                                                                  ttttattGCCGTCTTCTTTGTACGTCACAGTAATATGATCAATTTTCGGTTTACCTTGCTAATAGTCCTTAAAATTCTACAATGATATTTTTCGAGATTGCTTATAATATTTTATTTGGTAAGGGCCTGTACCAACAGGAg           <  2:106493/139‑1 (MQ=255)
                                                                                                                                  gataagtGCGGTGTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCACTAGTCCTTAAAATTCGACAATGATATTGTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCAACAGGAg           >  2:376735/7‑141 (MQ=255)
                                                                                                                                  gATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCAACAGGAg           >  1:445736/1‑141 (MQ=255)
                                                                                                                                  gATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCAACAGGAg           >  1:2798/1‑141 (MQ=255)
                                                                                                                                  gATTATTCCCGTCTTCTTGGGACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAAAGATATTTTTCGAGATTGCTTATAATCTTTTATTTCGTAAGGGCCTGTACCAACAGGAg           >  1:753685/1‑141 (MQ=255)
                                                                                                                                         gCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCAACAGGAGTTTGAtt    <  1:122443/141‑1 (MQ=255)
                                                                                                                                         gCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCAACAGGAGTTTGAtt    <  1:1006651/141‑1 (MQ=255)
                                                                                                                                         gCCGTCTTCTTGATACCTCACAGTAATATGATCAAGTTTCGGCTTACCTTGCCAATAGTCCTTAAAATTCGACACTGATATTTTTCTAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACAAACTGTAGTTTGAtt    <  2:905972/141‑1 (MQ=255)
                                                                                                                                           cGTCCTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCAACAGGAGTTTGATTaa  <  2:927190/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                            
TAAGTAAAGAAGTTCTAAATCCAGATTCTTTTGACACTTTTAAATTTTGATTATTTTCTATGTCTTGAACTTTATTAACTGGGACATCAGTTATTAAATCATCTTTTTGAGATTCTAAATTTCTGACGCGATTATTGCCGTCTTCTTGGTACGTCACAGTAATATGATCAAGTTTCGGTTTACCTTGCCAATAGTCCTTAAAATTCGACAATGATATTTTTCGAGATTGCTTATAATCTTTTATTTGGTAAGGGCCTGTACCAACAGGAGTTTGATTAA  >  CP000730/279426‑279704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: