Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 195,286 T→A 23.3% intergenic (‑97/‑82) USA300HOU_0183 ← / → USA300HOU_0184 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730195,2860TA23.3% 267.5 / 79.0 128intergenic (‑97/‑82)USA300HOU_0183/USA300HOU_0184hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (46/52);  new base A (11/19);  total (57/71)
Fisher's exact test for biased strand distribution p-value = 4.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 130 total aligned reads displayed.

TTGTTTCTAGCTAAACTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGAAAGAAGAACT  >  CP000730/195149‑195426
                                                                                                                                         |                                                                                                                                            
tttgttCTTGCTAAACTTGCTACGATAGTTTCTTTAGCCATAATGAGAGCCCCCTATATATATGTTTATTTACTTATTCCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTaaaa                                                                                                                                           <  2:224967/137‑1 (MQ=255)
  gTTTCTAGCTAAACTTGCTACGACAGCTTCTTTATCAAAAATGATCGTCCCCTATATATATGTTTAATTAATTATACCCTAACTTTTTTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTaaaaa                                                                                                                                         <  1:1182077/141‑1 (MQ=255)
    ttCTAGCTAAACTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTaaaaaaa                                                                                                                                       >  1:442923/1‑141 (MQ=255)
         acaaaaCTTGCCACAACATATTCTATAACCAAAATAATAGACCCTTATATACATGTTTATTTACTTATACCCTAACAAGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCt                                                                                                                                  <  2:462207/138‑1 (MQ=255)
          cTAATCTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCtt                                                                                                                                 <  2:351818/141‑1 (MQ=255)
          cTAAACTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATGCTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCtt                                                                                                                                 <  1:772947/141‑1 (MQ=255)
            aaaCTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTTTCTAAATATTAAAAAAAATATCTTaa                                                                                                                               >  1:207615/1‑141 (MQ=255)
                 tGCTACGACAGATTCTTTATCCATAATGAGAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATcc                                                                                                                          <  2:587835/141‑1 (MQ=255)
                 tGCTACGACACATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTACATATTTAAAAAAATATCTTAATATcc                                                                                                                          >  1:877569/1‑141 (MQ=255)
                  gCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCt                                                                                                                         >  2:187402/1‑141 (MQ=255)
                     aCGACAGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACGGAATTTTATCTAAATATTTAAAAAAATATCTTATAATCCtttt                                                                                                                      >  2:304334/1‑139 (MQ=255)
                      agaaagatactaaaTCCATAAAGATAGCCGCGTTCATCTAGGTTTCTTAACAAAAACCCTAACACGACTTTTACACACATTGAAAATATATTTTACTGTATTTTATCAAAAAAAAAAAAAAAATATCTTAATATCCTTGTa                                                                                                                     <  2:421087/128‑1 (MQ=255)
                         cAGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATc                                                                                                                  <  1:946128/141‑1 (MQ=255)
                         cAGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATc                                                                                                                  <  1:837310/141‑1 (MQ=255)
                         cAGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATc                                                                                                                  <  1:946217/141‑1 (MQ=255)
                         cAGATTCTTTATCCATAATGATAGCCCCCTACATCTATGTTTATGGACTTATACCCTAACATGATTTTGACACTCTTGAAACATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATc                                                                                                                  <  1:203216/141‑1 (MQ=255)
                          aGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTATATAAGGTGATCTAGATATTTAAAAAAATATCTTAATATCCTTGTAATcc                                                                                                                 >  1:91567/1‑141 (MQ=255)
                          aGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATcc                                                                                                                 >  2:1108412/1‑141 (MQ=255)
                           gATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCg                                                                                                                <  2:908811/141‑1 (MQ=255)
                           gATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCg                                                                                                                >  1:988450/1‑141 (MQ=255)
                           gATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCg                                                                                                                <  1:552255/141‑1 (MQ=255)
                                   aTCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATTCTTGTAATTCGATAAGAAt                                                                                                        >  2:650106/1‑141 (MQ=255)
                                   aTCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAAt                                                                                                        >  1:565187/1‑141 (MQ=255)
                                     ccATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATta                                                                                                      >  2:189554/1‑141 (MQ=255)
                                     ccATAATGATAGCCAACTATATTTATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATta                                                                                                      <  2:185965/141‑1 (MQ=255)
                                      cATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATtat                                                                                                     <  1:603580/141‑1 (MQ=255)
                                      cATAATGAGAGCCCCCTATATATATGGTTATTTACTTATACCCTACCATAATTTAGTGACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATtat                                                                                                     <  1:34116/141‑1 (MQ=255)
                                       aTAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTGTCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATtata                                                                                                    <  1:858982/141‑1 (MQ=255)
                                       aTAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATtata                                                                                                    <  2:906503/141‑1 (MQ=255)
                                         aaTGTTCGCCCCCTATATATATGTTTCTTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGt                                                                                                  <  1:390149/141‑1 (MQ=255)
                                         aaTGCTAGCCCCCTAGCTATATGTTTATTTACTTATCCCCTAACATTTTTTTTATCCTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGt                                                                                                  <  1:326961/141‑1 (MQ=255)
                                             aTAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAata                                                                                              <  1:938112/141‑1 (MQ=255)
                                             aTAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATAATAGAAata                                                                                              >  2:1171860/1‑141 (MQ=255)
                                               agtttccTATATATATGTTCGGGGTCGTATGCTCTGACATGATTTTTATACTCTTTGAAAATATATTTTACATAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGAGAAGAATTATAGTAATAtt                                                                                            <  2:835796/136‑1 (MQ=255)
                                                gCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTATGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATAttt                                                                                           >  1:803856/1‑141 (MQ=255)
                                                 cccccTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTCATCCGTTAAGAATTATAGTAATAgttt                                                                                          >  1:862947/1‑141 (MQ=255)
                                                 cccccTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATTAGAATTAATGTAATAtttt                                                                                          >  2:611745/1‑141 (MQ=255)
                                                 cccccTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATAtttt                                                                                          >  1:627740/1‑141 (MQ=255)
                                                  ccccTCTATTTTTGTTTATTTACTTATACCCTAGCATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATCTCCTTGTAATCCGATAAGAATTATAGTAATAttttt                                                                                         <  2:144239/141‑1 (MQ=255)
                                                       atatatatGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAAc                                                                                    <  2:537621/141‑1 (MQ=255)
                                                       atatatatGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAAc                                                                                    <  1:711947/141‑1 (MQ=255)
                                                        tatatatGGTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAAcc                                                                                   <  1:489721/141‑1 (MQ=255)
                                                         atatatGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCa                                                                                  >  2:1018271/1‑141 (MQ=255)
                                                         atatatGTTTATTTACTTATACCCTAACATGATTTTTATACTCGTTGAAAATATATTTTACAGAATGTTATCTAAATATTTAAAAAAAGATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCa                                                                                  <  1:1142771/141‑1 (MQ=255)
                                                            tatGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTg                                                                               <  1:647650/141‑1 (MQ=255)
                                                              tGTTTACTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGtt                                                                             <  1:28060/141‑1 (MQ=255)
                                                               gTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCACCCATTGTta                                                                            >  1:1058253/1‑141 (MQ=255)
                                                                  tatttaCTTATACCCTAAAATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCTGTTAAGAATTATGGTAATATTTTTTCAACCATTGTTATag                                                                         >  1:939177/1‑141 (MQ=255)
                                                                    tttaCTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATagga                                                                       >  1:260748/1‑141 (MQ=255)
                                                                      tccgtatcCCGTAACATGATTTTTATCCTCTTTGATCATATTTTTTTCTATCTTATCCAGAAAAAAAAAAAAAAATATCTTAATATCCTTGTAATCAGATAAGAATTATAGTAATATTTTTTCAACCATTGTTCTaggagg                                                                     <  2:842932/137‑1 (MQ=255)
                                                                      taCTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATaggagg                                                                     <  1:355612/141‑1 (MQ=255)
                                                                       aCTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGt                                                                    <  2:803856/141‑1 (MQ=255)
                                                                        cTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAAGTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTc                                                                   >  2:252557/1‑141 (MQ=255)
                                                                         ttATACCCTCATATGATTTTTATAGTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCt                                                                  <  1:272926/141‑1 (MQ=255)
                                                                           ataCCCTAACATGATTTTTTTTTTTTTTTTAAATATAATTAACAGAAACTAAATTAAATATTTAAAAAAAAATTTTAATATCCTTGTAACCCAATAATAATAATAGTAATATTATATCAACCATTGTTATATGATATCttt                                                                >  2:610411/1‑140 (MQ=255)
                                                                             aCCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCtta                                                                <  1:909869/139‑1 (MQ=255)
                                                                                  taCATTATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGa                                                         <  1:477965/140‑1 (MQ=255)
                                                                                  aaCATGATTTTTATTCTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGa                                                         <  1:1041323/141‑1 (MQ=255)
                                                                                  aaCATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGa                                                         >  1:785138/1‑141 (MQ=255)
                                                                                    cATGATTTTTATACTCTTTGAAAATATATTTTACAGAAGTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGaaa                                                       >  1:239126/1‑139 (MQ=255)
                                                                                     aTGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACat                                                      >  2:903469/1‑141 (MQ=255)
                                                                                     aTGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACat                                                      <  2:383580/141‑1 (MQ=255)
                                                                                      tGATTTTTTTTTTTTTTTAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCAATAAAACTTATAGTAATATTTTTTCATTCTTTGTTATAGAAGATCATATTAATAACatt                                                     >  2:289305/1‑141 (MQ=255)
                                                                                          ttttATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGATAtttttt                                                 >  2:268258/1‑141 (MQ=255)
                                                                                              ataCTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTttat                                             <  1:631589/141‑1 (MQ=255)
                                                                                              ataCTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTttat                                             >  2:44357/1‑141 (MQ=255)
                                                                                              ataCTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTttat                                             >  1:556704/1‑141 (MQ=255)
                                                                                                aCTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTttatta                                           >  2:4169/1‑141 (MQ=255)
                                                                                                          aaTATATTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTTTATTTTTTTTATAGGAAGTATTATTAATTACATTATTTTTATTAGAAGCTAACa                                 >  2:190146/1‑141 (MQ=255)
                                                                                                           atatatTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTacaaa                                >  1:1134164/1‑137 (MQ=255)
                                                                                                           atatatTTTACAGAATTTTAGCTAAATATTTAAAAAAATATCTTGATATCCTTGTAATGCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCGTATTAATCACATTATTTTGATTAGAAGCTAACaa                                >  1:725580/1‑141 (MQ=255)
                                                                                                            tatatTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAAt                               >  1:963171/1‑141 (MQ=255)
                                                                                                             atatTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGc                                      >  1:635695/1‑133 (MQ=255)
                                                                                                             atatTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGc                                      <  2:635695/133‑1 (MQ=255)
                                                                                                             atatTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATc                              <  2:91567/141‑1 (MQ=255)
                                                                                                              tattatACAAAATTTTATCTAAATATATAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGCAACCACTGTTATTAGAAGCTAACAATCt                             <  2:256282/141‑1 (MQ=255)
                                                                                                              tatTTTACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCt                             <  1:843390/141‑1 (MQ=255)
                                                                                                              tatTTTACAGAATTGTATCAAAATAATTAAAAAAATATCTTAATGTCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCt                             >  1:654515/1‑141 (MQ=255)
                                                                                                               atTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCtt                            <  1:895493/141‑1 (MQ=255)
                                                                                                                ttttACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTg                           <  1:647952/141‑1 (MQ=255)
                                                                                                                tgttACAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTg                           <  2:293305/139‑1 (MQ=255)
                                                                                                                 tttACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGa                          >  2:704189/1‑141 (MQ=255)
                                                                                                                   tACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGAtt                        <  2:683656/141‑1 (MQ=255)
                                                                                                                    aaaGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGAttt                       <  2:442923/139‑1 (MQ=255)
                                                                                                                     cAGAATTTTATCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTACCAATCTTGAtttt                      >  1:237717/1‑141 (MQ=255)
                                                                                                                      aGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTg                     <  2:505359/141‑1 (MQ=255)
                                                                                                                          ttttATCTAAATATTTCAAAAAATATCTTACTTTCCTTGTAATCCGATAAGAATTATACTAATATTTTTTCAACACTTGTTGTAGGAGTTCTTTTTAATGAGCTTCTTTTCTTTCGAAGCTAACACTCTTGTTTTTTCATc                 >  2:150673/1‑141 (MQ=255)
                                                                                                                          ttttATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAAAAATCTTGATTTTGCATc                 >  2:645496/1‑141 (MQ=255)
                                                                                                                           tttATCTACATATTAAAAAAAATATGTTAATATCTTTGTAATCCGATAAGAAAAATATTAATAATTTTTCAACAATTGTTATAGGAGGTCTTAACAATGACATTATTTTTATTAGAAGCTACCAATCTTGATTTTGCCTCa                >  2:453257/1‑141 (MQ=255)
                                                                                                                             tATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACGATCTTGATTTTGCATCAAc              >  2:803588/1‑141 (MQ=255)
                                                                                                                              aTCTAAATATTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACg             <  1:1105330/141‑1 (MQ=255)
                                                                                                                                cTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGaa           >  2:642643/1‑141 (MQ=255)
                                                                                                                                cTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGaa           <  1:1018271/141‑1 (MQ=255)
                                                                                                                                 tAAATATTTAAAAAAATATATTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGaaa          >  1:718093/1‑141 (MQ=255)
                                                                                                                                   aaTATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGAaaga        >  2:535148/1‑141 (MQ=255)
                                                                                                                                   aaTATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATAGTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGAaaga        <  1:1055239/141‑1 (MQ=255)
                                                                                                                                   aaTATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATCATGGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGAaaga        <  2:939177/141‑1 (MQ=255)
                                                                                                                                    atatTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCCACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGAaagaa       <  1:473277/141‑1 (MQ=255)
                                                                                                                                    atatTAAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGAaagaa       <  2:944001/141‑1 (MQ=255)
                                                                                                                                         tAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCGTCAACGATAGAAGAACt  >  1:253539/1‑141 (MQ=255)
                                                                                                                                         |                                                                                                                                            
TTGTTTCTAGCTAAACTTGCTACGACAGATTCTTTATCCATAATGATAGCCCCCTATATATATGTTTATTTACTTATACCCTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGAAAGAAGAACT  >  CP000730/195149‑195426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: