New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 864131 =93 (0.900)4 (0.040) 3/254 NT 4.1% coding (321/459 nt) USA300HOU_0807 hypothetical membrane protein
?CP000730 864198 = 94 (0.930)coding (388/459 nt) USA300HOU_0807 hypothetical membrane protein

Only 100 of 108 total aligned reads displayed.

GACATACTTATGTGTGGTGGTTTATGTTTGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGTCGTATATAAGGAACGGAGGACAATTTA  >  CP000730/864058‑864336
                                                                                                                                            |                                                                                                                                          
gACATACTTATGTGTGGTGGTTTATGTTTGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATGGttatta                                                                                                                                            >  2:619938/1‑141 (MQ=255)
 aCATACTTATGTGTGGTGGTTTATGTTTGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACAGTGCCAATTTTAATTGTtattat                                                                                                                                           <  2:74102/141‑1 (MQ=255)
  tccacgtATGGGTGGTGGTTTATGTTTGCAGTTTATGTATGAAATCGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATGGCCAATTTTAATTGTTATtata                                                                                                                                          <  2:1110480/135‑1 (MQ=255)
    tACTTATGTTTGGTGGTTTATGTTTGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAgg                                                                                                                                        <  2:121383/141‑1 (MQ=255)
       ttATGTGAGGTGGTTTATGTTTGCAGTTTATGTATCAGATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGACCACCGTGCGTACTTAACATTACCACTTTTAATTGGTCTTATAGGTTc                                                                                                                                     >  2:267798/1‑141 (MQ=255)
        tATGTGTGGTGGTTTATGTTTGCAGTATATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCg                                                                                                                                    <  1:510821/141‑1 (MQ=255)
         aTGTGTGGTGGTTTATGTTTGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCgg                                                                                                                                   >  1:408614/1‑141 (MQ=255)
            tgtgGTGGTTTATGTTTGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTg                                                                                                                                <  1:159632/141‑1 (MQ=255)
             gtggtgGTTTATGTTTGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGc                                                                                                                               >  2:954501/1‑141 (MQ=255)
               ggtggtTTATGTTTGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCATGCAATAAAAGCTGCACTCGTTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCAt                                                                                                                             <  1:279423/141‑1 (MQ=255)
               ggtggtTTATGTTTGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCAt                                                                                                                             <  1:235403/141‑1 (MQ=255)
                gtggtTTATGTTTGCAGTTTATGTATCAACCAGTTTTTTTACGTTGATTAATTTATCAACCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCAtt                                                                                                                            <  1:985311/141‑1 (MQ=255)
                       aTGTTTGCAGTTTAAGTATGAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCATTTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGAtt                                                                                                                     >  1:779469/1‑141 (MQ=255)
                        tGTTTGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGAttt                                                                                                                    <  1:1123759/141‑1 (MQ=255)
                            tGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTACACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTatat                                                                                                                >  1:1124516/1‑141 (MQ=255)
                              tagaaacaacaagcatataaatcgctaatgcaaccgaacctatAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGc                                                                                                              >  1:1197976‑M1/44‑141 (MQ=255)
                              cAGTTTATGTATCAAATAGTTTGGTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGc                                                                                                              <  2:151122/141‑1 (MQ=255)
                               aGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCACTAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCt                                                                                                             <  2:790050/141‑1 (MQ=255)
                                 tttATGTATCAAATAGTTTGTTTACGTTGACTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCttg                                                                                                           <  2:756608/141‑1 (MQ=255)
                                 ttaaTGTATCAGATAGTTTGTTTACGTTGATTAATTTATCAAGCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTGAACGGTGCCAATTTTAATTGTTAGTATAGGTTCGGTTGCAGTAGCGATTTATATGCttg                                                                                                           <  2:179511/138‑1 (MQ=255)
                                  ttATGTATCAAATATTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATCGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCttgt                                                                                                          <  1:819304/141‑1 (MQ=255)
                                  aacaacaagcatataaatcgctaatgcaaccgaacctatAATCACAATTCAAGCAATAATAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTCGCGATTTATTTGCatgt                                                                                                          <  2:800835‑M1/102‑1 (MQ=255)
                                  aacaacaagcatataaatcgctaatgcaaccgaacctatAATCACAATTCAAGCAATAAAAGCTGCACACGGTGGGTACTAAACATTACCAATTTTAATTGTTGTTATAGGTTCGGTTGCATgaccgatttattgccatgt                                                                                                          <  2:63638‑M1/102‑9 (MQ=255)
                                   tATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTCGCGCTTTATATGCttgtt                                                                                                         >  2:442731/1‑141 (MQ=255)
                                      acatggcaataaatcggtcatgcaaccgaacctataacaacaattaaaattggtaatgtttagtacccaccgtgtgcagcttttattgcttgaattgtgattATAGGTTCGGTTGCATTAGCGATTTATATGCTTgttgtt                                                                                                      <  2:63638‑M2/39‑1 (MQ=255)
                                      acatgcaaataaatcgcgaatgcaaccgaacctataataacaattaaaattggcaatgttaagtacgcaccgtgtgcagctattattgcttgaattgtgattATAGGTTCGGTTGCATTAGCGATTTATATGCTTgttgtt                                                                                                      <  2:800835‑M2/39‑1 (MQ=255)
                                        aTCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGGAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTc                                                                                                    >  2:775057/1‑141 (MQ=255)
                                          gcatataaatcgctaatgcaaccgaacctataataacaattaaaattggcaatgttaagtacgcaccgtgtgcagcttttattgcttgaattgtgattATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTa                                                                                                  >  1:1197976‑M2/99‑141 (MQ=255)
                                               aGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATaaaa                                                                                             >  2:833441/1‑141 (MQ=255)
                                                 tttggttACGTTGAGTAACTTATCAATTACAATTCAAGCACTAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTGGTTGTTTCTATCAAACg                                                                                           <  2:313962/141‑1 (MQ=255)
                                                  ttgtttACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGt                                                                                          >  1:787939/1‑141 (MQ=255)
                                                  ttgtttACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATCTATATGCTTGTTGTTTCTATCAAACGt                                                                                          >  1:1076320/1‑141 (MQ=255)
                                                   tgtttACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTa                                                                                         <  2:409698/141‑1 (MQ=255)
                                                    gtttACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTaa                                                                                        >  2:442867/1‑141 (MQ=255)
                                                          gTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTAc                                                                                  <  1:676190/141‑1 (MQ=255)
                                                          gTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTAc                                                                                  <  1:85904/141‑1 (MQ=255)
                                                          gTTGATTAACCTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTTTCAAACGTAAAAGTAc                                                                                  <  1:1134099/141‑1 (MQ=255)
                                                           ttGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACa                                                                                 <  1:899909/141‑1 (MQ=255)
                                                           ttGATCAATTTATCAACCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACa                                                                                 <  1:245694/141‑1 (MQ=255)
                                                            tGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACAt                                                                                <  1:32074/141‑1 (MQ=255)
                                                              aTTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACAttt                                                                              >  1:492902/1‑141 (MQ=255)
                                                                   tttATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTGTATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCg                                                                         >  1:895617/1‑141 (MQ=255)
                                                                   tttATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACTTAAAAGTACATTTAATCg                                                                         >  2:953319/1‑141 (MQ=255)
                                                                   tttATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACCTTTAAtac                                                                         >  2:738004/1‑139 (MQ=255)
                                                                   tttATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCg                                                                         >  2:953294/1‑141 (MQ=255)
                                                                   tttATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCg                                                                         >  1:256356/1‑141 (MQ=255)
                                                                    ttATCAATCACAGTTCAAGCAATAAAAGCTGCAGACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGCTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACATAAAAGTACATTTAATCGc                                                                        <  2:668499/141‑1 (MQ=255)
                                                                       tcaatcaCACTTCATGCATTAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTTGCGCTCTATATGCTTGTTGTTTCTATCAAACGAAAAAGCACATATAGTCGGTAg                                                                     >  2:375160/1‑141 (MQ=255)
                                                                       tcaatcaCAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATGGCTAg                                                                     >  2:929302/1‑141 (MQ=255)
                                                                       tcaatcaCAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTaa                                                                     >  2:738311/1‑140 (MQ=255)
                                                                           TCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGaaaa                                                                 <  1:914381‑M1/141‑1 (MQ=255)
                                                                            ctcaATTCAAGCAATAAAAGCTGCACTCGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATTTCTAGAAAAt                                                                <  1:877573/139‑1 (MQ=255)
                                                                            cacaATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAAt                                                                >  2:930790/1‑141 (MQ=255)
                                                                            cacaATACAAGCAATAAAAGCTGCACACGGTGCGTACTTATGAAGTCCGAGTTGAAGTGTTATTATAGGTTCGGTTGCAATAGCGAATTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAAt                                                                >  2:493143/1‑141 (MQ=255)
                                                                             acaATTCATGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAAtt                                                               <  1:843108/141‑1 (MQ=255)
                                                                              caATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTg                                                              >  1:125296/1‑141 (MQ=255)
                                                                               aaTTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTCTATATCAAACGGAAAAGTACATTTAATCGCTAGAAAATTGa                                                             >  1:1116172/1‑141 (MQ=255)
                                                                                aTTCAAGCACTAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTCTCAAACGTCAAAGTACATTTAATCGCTAGAAAATCGAt                                                            >  2:804860/1‑141 (MQ=255)
                                                                                aTTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGAt                                                            >  1:1082150/1‑141 (MQ=255)
                                                                                   cAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGAtttt                                                         >  1:696237/1‑141 (MQ=255)
                                                                                        aaTAAAAGCTGCACACGGTTCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACaa                                                    <  2:1036244/141‑1 (MQ=255)
                                                                                        aaTAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACaa                                                    <  2:768144/141‑1 (MQ=255)
                                                                                        aaTAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACaa                                                    <  1:942184/141‑1 (MQ=255)
                                                                                        aaTAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTCACTTTAACaa                                                    <  2:437022/141‑1 (MQ=255)
                                                                                        aaTAAAAGCTGCACACACTCCGTACTTAACTTTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTATATTTAATCGCTAGAAAAGTGATTTTAActa                                                    <  2:1146155/141‑3 (MQ=255)
                                                                                          tAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATCTTAATGGTTGTTGGAGGGTCGGTTGCATTAGCGGTTGAGATGCTTGTTGTTTCTATCAAAGGGCACAGTACATTTAATCGCTAGAGAATTGATTTTAACAATa                                                  >  2:338022/1‑141 (MQ=255)
                                                                                            aaaGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATaaa                                                <  1:253976/141‑1 (MQ=255)
                                                                                             aaGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATaaaa                                               >  1:221711/1‑141 (MQ=255)
                                                                                             aaGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATaaaa                                               <  2:627618/141‑1 (MQ=255)
                                                                                               gCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTCTAGGTAAGAATGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTGAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAat                                             >  1:693274/1‑141 (MQ=255)
                                                                                               gCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAat                                             <  1:413710/141‑1 (MQ=255)
                                                                                                cTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAata                                            >  2:938314/1‑141 (MQ=255)
                                                                                                  acacaCGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATg                                          <  2:1124516/140‑1 (MQ=255)
                                                                                                   cacaCGGTGCGTACTTAACATTGCCAATTTTACTTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGa                                         <  1:471841/141‑1 (MQ=255)
                                                                                                   cacaCGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGa                                         >  1:938990/1‑141 (MQ=255)
                                                                                                   cacaCGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATAGGa                                         >  2:942785/1‑141 (MQ=255)
                                                                                                        ggTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATGAAAATATGATAtac                                    <  1:639841/141‑1 (MQ=255)
                                                                                                         gTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATAtact                                   <  1:643773/141‑1 (MQ=255)
                                                                                                           gCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAGACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATAtactac                                 <  2:947779/141‑1 (MQ=255)
                                                                                                           gCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTATTCTTACTTTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATAtactac                                 >  1:929020/1‑141 (MQ=255)
                                                                                                           gCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTGGCATTAGCGATTTATGTGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGATAGAAACTTGATATTCACAATAACAATATGATAgactac                                 >  1:245970/1‑141 (MQ=255)
                                                                                                             gTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTATCAATAAAAATATGATATACTACtt                               <  1:873674/141‑1 (MQ=255)
                                                                                                             gTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTATCAATAAAAATATGATATACTACtt                               <  1:874063/141‑1 (MQ=255)
                                                                                                              tACTTAACATGGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACACTACAAATATGATAtacgacaag                              <  2:897154/141‑4 (MQ=255)
                                                                                                               aCTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGt                             <  2:7577/141‑1 (MQ=255)
                                                                                                               aCTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGt                             <  1:838277/141‑1 (MQ=255)
                                                                                                               aCTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGt                             <  2:859075/141‑1 (MQ=255)
                                                                                                               aCTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGt                             <  2:102030/141‑1 (MQ=255)
                                                                                                                       ttGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAAGCGCTAGAAAATTGATTTTAACAATATAAATATGATATACTACTTGTCGtatata                     <  1:775057/141‑1 (MQ=255)
                                                                                                                        tGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACGTGTCGTATATaa                    <  2:939674/141‑1 (MQ=255)
                                                                                                                          ccAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGTCGTATATAAgg                  <  2:408614/141‑1 (MQ=255)
                                                                                                                            aaTTTTAATTGTTATTATAGGTTCGGATGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGTCGTCTATAAGGaa                >  2:122685/1‑141 (MQ=255)
                                                                                                                             aTTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTCCTTGTCGTATATAAGGAAc               >  2:338512/1‑141 (MQ=255)
                                                                                                                               tttAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGTCGTATATAAGGAACgg             <  1:403380/141‑1 (MQ=255)
                                                                                                                               tttAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGTCGTATATAAGGAACgg             <  1:1075997/141‑1 (MQ=255)
                                                                                                                                  aattgtgattAAAGGTTCTGTTGCATTAGCGATTTACATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGAAAAAAAAAAAAAAAATATGATATACTACTTGTCGTATATAAGGAACggagg          <  2:663832‑M2/131‑1 (MQ=255)
                                                                                                                                  aaTTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGTCGTATATAAGGAACggagg          <  1:652613/141‑1 (MQ=255)
                                                                                                                                   aTTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATGAAAGAATTATATACTACTTGTCGTATATAAGGAACggcgga         >  1:29419/1‑141 (MQ=255)
                                                                                                                                   aTTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGTCGTATATAAGGAACggagga         >  1:96149/1‑141 (MQ=255)
                                                                                                                                          ttATAGGTTCGGTTGCATTAGCGATCTATATGCTTGTTGTTTCTATCAATCGTAAAAGATTATTTAATCGCTCGAAAATTGATTTTAGTGATAATAATATGATATACTACTTGTCGTATATaaggaacggaggagacttga  >  2:472887‑M2/3‑134 (MQ=255)
                                                                                                                                            |                                                                                                                                          
GACATACTTATGTGTGGTGGTTTATGTTTGCAGTTTATGTATCAAATAGTTTGTTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTACTTAACATTGCCAATTTTAATTGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTTGTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAGAAAATTGATTTTAACAATAAAAATATGATATACTACTTGTCGTATATAAGGAACGGAGGACAATTTA  >  CP000730/864058‑864336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.