| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1131177 = | 111 (1.080) | 4 (0.040) | 3/242 | NT | 3.7% | intergenic (+141/‑1087) | USA300HOU_1058/USA300HOU_1059 | hypothetical protein/hypothetical protein |
| ? | CP000730 | 1131203 = | 103 (1.070) | intergenic (+167/‑1061) | USA300HOU_1058/USA300HOU_1059 | hypothetical protein/hypothetical protein | |||||
CCAACCATTAGCACAAACGTTCCAAATGCCTACTCATTTTAAAGGCATTGATTTGACTTCATCTCGTTTTATCAAATGGTTAAATGATATGAATATCATTCCAGGCTATTATGGCGTAAATAGTATAAATC‑‑TGATGAAT‑‑GATTTATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1131324‑1131177‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatttatacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTAA > CP000730/1131203‑1131341 CCAACCATTAGCACAAACGTTACAAATGCCTACTCATTTTAAAGGCATTGATTTGACTTCATCTCGTTTTATCAAATGGTTAAATGATATGAATATCATTCCAGGCTATTATGGCGTAAATAGTATAAATC‑‑TGATGAAT‑‑GA < 1:874694/141‑1 ACCATTAGCACAAACGTTCCAAATGCCTACTCATTTTAAAGGCATTGATTTGACTTCATCTCGTTTTATCAAATGGTTAAATGATATGAATATCATTCCAGGCTATTATGGCGTAAATAGTATAAATC‑‑TGATGCAT‑‑GATTT > 1:478992/1‑141 cagTAGCACAAACGTTCCAAATGCCTGCTCATTTTAAAGGCATTGATTTGACTTCATCTCGTTTTATCAAATGGTTAAATGATATGAATATCATTCCAGGCTATTATGGCGTAAATAGTATAAATC‑‑TGATGAAT‑‑GATTTAT < 1:952454/138‑1 AATGCCTACTCATTTTAAAGGCATTGATTTGACTTCATCTCGTTTTATCAAATGGTTAAATGATATGAATATCATTCCAGGCTATTATGGCGTAAATAGTATAAATC‑‑‑‑ATTCATCAGATTTATACTATTTACGCCATAATAG < 1:195532/141‑1 TCGTTTTATCAAATGGTTAAATGATATGAATATCATTCCAGGCTATTATGGCGTAAATAGTATAAATCATTCATCA‑‑‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAA < 1:1075191/141‑1 TCGTTTTATCAAATGATTAAATGATATGAATATCATTCCAGGCTATTATGGCGTAAATAGTATAAATCATTCATCA‑‑‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAA < 1:386073/141‑1 TGATGAAT‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTA > 2:778989/1‑141 AT‑‑GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCT < 2:195532/141‑1 GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTAC > 1:977376/1‑141 GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTAC > 1:603601/1‑141 GATTTATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTAC > 1:603754/1‑141 TATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACC < 1:359820/141‑1 ATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCT > 1:956486/1‑141 ATACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCGAATGGTTGGTAGTACCTACCACCT < 1:769500/141‑1 TACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTA < 1:929696/141‑1 TACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTA > 2:439785/1‑141 TACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTA > 2:493299/1‑141 TACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATATGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTA > 2:76343/1‑141 ACTATTTCCGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTAA < 2:1006624/141‑1 ACTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTAA < 1:119980/141‑1 CCAACCATTAGCACAAACGTTCCAAATGCCTACTCATTTTAAAGGCATTGATTTGACTTCATCTCGTTTTATCAAATGGTTAAATGATATGAATATCATTCCAGGCTATTATGGCGTAAATAGTATAAATC‑‑TGATGAAT‑‑GATTTATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1131324‑1131177‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatttatacTATTTACGCCATAATAGCCTGGAATGATATTCATATCATTTAACCATTTGATAAAACGAGATGAAGTCAAATCAATGCCTTTAAAATGAGTAGGCATTTGGAACGTTTGTGCTAATGGTTGGTAGTACCTACCACCTAA > CP000730/1131203‑1131341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |