New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 52495 =83 (0.900)123 (1.350)
+T		 7/258 NT 59.6% intergenic (+105/‑568) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator
?CP000730 = 52988 85 (0.930)intergenic (+598/‑75) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator

Only 100 of 256 total aligned reads displayed.

TTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGG  >  CP000730/52848‑53128
                                                                                                                                            |                                                                                                                                            
 tGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCCGAGTAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcg                                                                                                                                             >  1:202836/1‑141 (MQ=17)
  taaacCATCGTAGTAATTGTGCGAAAATCCCGTGAAATAACCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGTGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCac                                                                                                                                            >  2:926360‑M2/2‑139 (MQ=255)
      tcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGACGTCATCGTAGTAATCGCGCGAAAATCGCGTGa                                                                                                                                        <  1:533802/141‑1 (MQ=17)
       catcGTAGTAATCGCGCGAAAATCGCGTAAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAGTCAGAGGAATCGTTTGAAATCATCATAGTAATCGCGCGAAAATCGCGTGaa                                                                                                                                       >  2:731507/1‑141 (MQ=12)
                  tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATAATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGtg                                                                                                                            >  1:37419/1‑140 (MQ=255)
                    gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGa                                                                                                                          <  1:1109574/141‑1 (MQ=40)
                       cgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcg                                                                                                                                             <  1:838741/119‑1 (MQ=33)
                          aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGGAATCAGCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGttt                                                                                                                    >  1:334854/1‑141 (MQ=255)
                          aaaTCACGTGAAATAATAAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATAATAGTAGTAATCGCGAGAAAATAaagtgaaataataagagggaacgttt                                                                                                                    <  2:981181‑M2/141‑27 (MQ=255)
                           aaTCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAGCacgtgaaatagtcagggggaacgtttg                                                                                                                   <  2:165131‑M2/141‑28 (MQ=255)
                             tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAACCGTTTGCAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGGAGACGGATTGAg                                                                                                                 >  2:329635/1‑141 (MQ=255)
                               ccgtGAAATCAACGGAGGAAACGTTTGTAAGCATCGTAGTAATCGCGCGCAAATCCCGTGAAATAATCAGAGCAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaat                                                                                                               >  1:979719‑M2/2‑110 (MQ=255)
                                 gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                             <  1:863181/141‑1 (MQ=255)
                                 gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                             <  1:726042/141‑1 (MQ=255)
                                               ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAttt                                                                                               <  1:1041314/141‑1 (MQ=255)
                                                      tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATAtt                                                                                        <  1:582196/141‑1 (MQ=255)
                                                         gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTAt                                                                                     <  1:946798/141‑1 (MQ=255)
                                                         gAAAACAACGTAGGAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTAt                                                                                     <  1:317312/141‑1 (MQ=255)
                                                           aaTCATCGTAGTAATCGCGCAAAAATCTCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATgg                                                                                   <  1:201969/141‑1 (MQ=255)
                                                            aacatcGTAGTAATCGCGCGAAAATCGCGGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGt                                                                                  <  2:53405/139‑1 (MQ=255)
                                                               atcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCgcgtgaaataataagaggaatggtttgaaaaaatcgaagtaatcgcgcgaaaatcacgggaaa                                                                               <  2:1072550‑M2/141‑64 (MQ=255)
                                                               atcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTg                                                                               >  2:834652/1‑141 (MQ=255)
                                                                      taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAAt                                                                        <  1:787268/141‑1 (MQ=255)
                                                                       aaTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAGTCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGCGTATTTTAATATTTATGGTTTGGAGGAAtt                                                                       >  1:546183/1‑141 (MQ=255)
                                                                             gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTg                                                                 >  2:624344/1‑141 (MQ=255)
                                                                               gAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATTGTTTGGAGTAATTGCGTTGCa                                                               <  1:571685/141‑1 (MQ=255)
                                                                                aaaaGCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGATCTCGGCATTAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCAt                                                              <  1:254867/141‑1 (MQ=25)
                                                                                 aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATa                                                             <  1:851083/141‑1 (MQ=255)
                                                                                 aaaTCCCGTGAAATAATCATACGAAACGTTTGAACACACCATAGAAATCTCGCGAAAATCacgtgaaataatcagagaaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgttt                                                             >  2:497883‑M2/1‑60 (MQ=255)
                                                                                  aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGCAATACTATGGTAGACGGGTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTGGGAGGAATTGAATTGCATag                                                            >  2:43653/1‑141 (MQ=25)
                                                                                   aaaagatgaaataATCAGGTGAAACATTTAAAAATATAGTAAAAATGGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttga                                                           >  2:100720‑M2/7‑58 (MQ=255)
                                                                                    tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaa                                                          <  1:916845‑M2/141‑85 (MQ=255)
                                                                                    tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATagag                                                          <  1:554966/141‑1 (MQ=255)
                                                                                       cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcg                                                                                             >  1:598242‑M2/1‑54 (MQ=255)
                                                                                       cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttga                                                                                                                  <  1:924357‑M2/82‑29 (MQ=255)
                                                                                         tGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcat                                                     >  1:163849‑M2/1‑52 (MQ=255)
                                                                                         tGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatc                                                                                                           >  2:341781‑M2/1‑52 (MQ=255)
                                                                                           aaaTAATCCAAGGAATCTTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaa                                                   <  2:191639/141‑1 (MQ=255)
                                                                                               aatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgc                                                                                              <  2:604528‑M2/94‑49 (MQ=255)
                                                                                                atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatc                                                                                                              <  1:629196‑M2/77‑33 (MQ=255)
                                                                                                 tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATTTTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAGGTAAatataa                                             >  1:283111/1‑140 (MQ=255)
                                                                                                 tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAatatat                                             >  1:350834/1‑141 (MQ=255)
                                                                                                      agaagcgtgctctatcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGt                                        <  1:774155/128‑1 (MQ=255)
                                                                                                        atacgttTGAAAAAATTGTAAAAATTGCGTGAAAATCacgtgaaataatcagaggaatcgcttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcg                                      >  2:548424‑M2/4‑37 (MQ=255)
                                                                                                         aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagt                                                                                                      >  1:709251‑M2/1‑36 (MQ=255)
                                                                                                         aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagt                                                                                                      <  2:709251‑M2/76‑41 (MQ=255)
                                                                                                          tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaa                                    >  2:916845‑M2/1‑35 (MQ=255)
                                                                                                          tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaagtgaaataatcagaggaaaggtttgcaagcatcgtagtaatcgcgcgaa                                    <  2:1109574‑M2/141‑107 (MQ=255)
                                                                                                           cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCaggtgaaataatccgaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaa                                   >  2:109130‑M2/1‑34 (MQ=255)
                                                                                                           cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttg                                                            <  1:469923‑M2/116‑83 (MQ=255)
                                                                                                           cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgta                                                                                                        >  2:781506‑M2/1‑34 (MQ=255)
                                                                                                           cGTTTGAAATCATCGTAGTAATCGAGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcctcgtagtaatcgcgcgaaa                                   <  1:704985‑M2/141‑108 (MQ=255)
                                                                                                            gTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcaggggaatcgtttgaaatcatcgtagtaatagcgagagaa                                  <  2:272335‑M2/141‑109 (MQ=255)
                                                                                                            gTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaa                                  <  1:1076058‑M2/141‑109 (MQ=255)
                                                                                                            gTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatagcgcgaaaatcacgtgaaataatcaggggaatagtttgacataatcgtaggagtcgcacgaaaa                                  <  2:380492‑M2/141‑109 (MQ=255)
                                                                                                            gTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatagcgcgaaaatcacgtgaaagaataagaggaatggtttgaaatcatcagagtaaggtcgagaaaa                                  <  2:1041314‑M2/141‑109 (MQ=255)
                                                                                                            gTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagt                                                                                                      <  1:958778‑M2/73‑41 (MQ=255)
                                                                                                             tttGAAACCAACCGAATAATCTTGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcggagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaat                                 >  2:203280‑M2/1‑32 (MQ=255)
                                                                                                             tttAAAAACATCATAAAAATCGCGGAAAAATCacgggaaataatcagaggaatcgcttgaaatcatcgaagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaat                                 >  1:993444‑M2/1‑32 (MQ=255)
                                                                                                              ttGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatc                                <  1:109130‑M2/141‑111 (MQ=255)
                                                                                                              ttGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaa                                                                                          >  2:851645‑M2/1‑31 (MQ=255)
                                                                                                              ttGAAAACATCATAAAAATCGCGTGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcctagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatc                                >  2:390712‑M2/1‑31 (MQ=255)
                                                                                                              ttGAAAAAATAGTAATAATCTAGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatagtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatc                                >  2:699903‑M2/1‑31 (MQ=255)
                                                                                                               tGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagagggatcgtttgaaataatcaaagcaatgacgcgacaatca                               <  2:254867‑M2/141‑112 (MQ=255)
                                                                                                               tGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCAGAGAGAAAGTAAATATATAGAGTATAAGAAAt                               >  1:232919/1‑141 (MQ=255)
                                                                                                                taaatCATCGTAGAAATTGTGTGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataattagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcac                              >  2:590561‑M2/2‑29 (MQ=255)
                                                                                                                 aaaTCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgatttcaccgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacg                             >  1:802979‑M2/1‑28 (MQ=255)
                                                                                                                 aaaTCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacg                             >  1:688145‑M2/1‑28 (MQ=255)
                                                                                                                     catcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacg                                                                                    >  2:137060‑M2/1‑24 (MQ=255)
                                                                                                                      atcGTAATAATCTTGCGAAAATCacgtgaaataatcaggggaatcgtttgaaatcatcgtagtactcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaa                        >  2:801294‑M2/1‑23 (MQ=255)
                                                                                                                       tcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtg                                                                                  <  1:867894‑M2/82‑61 (MQ=255)
                                                                                                                        cGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatca                                                                                                             <  2:760818‑M2/54‑34 (MQ=255)
                                                                                                                         gtagtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaa                                                                                                                 <  1:815123‑M2/49‑30 (MQ=255)
                                                                                                                          tagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                    <  1:739176/141‑1 (MQ=255)
                                                                                                                           aaaaattgCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtaataatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatc                   >  2:980430‑M2/4‑18 (MQ=255)
                                                                                                                            gtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcg                                        <  1:382422‑M2/119‑103 (MQ=255)
                                                                                                                             taATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgt                                                  <  1:149875‑M2/108‑93 (MQ=255)
                                                                                                                               ctcgctctataaTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATCAGAAATCACGAAAAGGATTATc               >  2:957750/11‑141 (MQ=255)
                                                                                                                               atttattgaaaatcacgcgagataatcagaggaatcgtttgaaatcatcgtagtaattgtgcgaaaatcacgtggaagaatcagaggaatcggttgaagtcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagag               >  2:641604‑M2/8‑14 (MQ=255)
                                                                                                                               aTCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcga                                                                                            <  2:1027983‑M2/64‑51 (MQ=255)
                                                                                                                                   cgcgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtt                                                              <  1:516206‑M2/90‑81 (MQ=255)
                                                                                                                                    gcgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgaagtaatcgcgcgaaagtcacgtgagataatcagaggaatcgtttgaaatcaacgtagtaatcgcgcgaaagtctcgtcagataatcagaggcgtc          <  1:177621‑M2/141‑133 (MQ=255)
                                                                                                                                     cgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgacaatcacgtgaaataatcagaggaatcgtttgaaataatcgtagtaatcgcgcgaatatcacgtgaaataatcagggcaagcg         <  1:675110‑M2/141‑134 (MQ=255)
                                                                                                                                     cgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaat                                                                                        <  2:524776‑M2/62‑55 (MQ=255)
                                                                                                                                     cgAAAATCacgtgaaataatcagaggaatcgtttga                                                                                                                  <  1:1015356‑M2/36‑29 (MQ=255)
                                                                                                                                      gAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAACGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGat        >  2:587081/1‑141 (MQ=255)
                                                                                                                                       aaaaTCacgtgaaataatcaaagaaaacgtttgaaaacatagtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtt       >  2:978422‑M2/1‑6 (MQ=255)
                                                                                                                                        aaaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgttt      >  1:1022566‑M2/1‑5 (MQ=255)
                                                                                                                                        aaaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttg                                                            >  2:683636‑M2/1‑5 (MQ=255)
                                                                                                                                        aaaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaa                                                                                           <  1:438960‑M2/56‑52 (MQ=255)
                                                                                                                                         aaTCaggttaaataatcaggggtaatgttttcaatcatcctagtaatcttgtcgaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttg     >  2:572463‑M2/1‑4 (MQ=255)
                                                                                                                                         aaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatc                                                    <  2:1003294‑M2/94‑91 (MQ=255)
                                                                                                                                         aaTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATAtt     >  1:892043/1‑141 (MQ=255)
                                                                                                                                         aaTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCAGAGAGAAAGTAAATATATAAAGTATAAAAAATAACGAAAAGGATTATCTAATGaaaat     >  2:945595/1‑137 (MQ=255)
                                                                                                                                           tCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttg                                                            <  1:452240‑M2/84‑83 (MQ=255)
                                                                                                                                           tCGCGTGAAATGCTATGGTAGACGGTTTGAGTAAATTAATGGAGTAGTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAAGATATAGAGGATAAGAAATCACGACAAGGATAATCTAATGATATTTg   >  2:475577/1‑141 (MQ=255)
                                                                                                                                           tCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCCCGAAAAGGGTTATCTAATGATAtgtg   >  1:847814/1‑141 (MQ=255)
                                                                                                                                            cgcgTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTgg  >  1:224347/1‑141 (MQ=255)
                                                                                                                                            cgcgTGAAATACTACGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTgg  >  1:608885/1‑141 (MQ=255)
                                                                                                                                            cacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcaggggaatcgtttgaaa  <  2:875068‑M2/141‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGG  >  CP000730/52848‑53128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.