BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2085309	69 (0.750)	3 (0.040)	3/232	NT	4.0%	intergenic (‑571/‑387)	mapW2/USA300HOU_1944	cell surface protein MapW2/hypothetical protein
*	?	CP000730	2128358 =	81 (0.990)	3 (0.040)	3/232	NT	4.0%	intergenic (+72/+1047)	int/USA300HOU_2011	bacteriophage integrase/possible leukocidin subunit

Only 100 of 168 total aligned reads displayed.

ACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAAATTTAAAATTACA  >  CP000730/2085169‑2085449

ttctcatttgttagaagaaaaatttaatgaagaggacaaacaagaatgtagaattttagaaagtatgtaatttagggacccattagcgactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTgg                                                                                                                                              <  1:484805‑M1/14‑1 (MQ=255)

ttctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTgg                                                                                                                                              <  2:631779‑M1/14‑1 (MQ=255)

 tctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGga                                                                                                                                             <  1:883188‑M1/15‑1 (MQ=255)

      tttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACtt                                                                                                                                        >  1:561724‑M1/122‑141 (MQ=255)

        aTTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACtttt                                                                                                                                      <  1:848687/141‑1 (MQ=255)

           tagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAAc                                                                                                                                   >  1:734650‑M1/117‑141 (MQ=255)

           tagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAAc                                                                                                                                   >  2:357357‑M1/117‑141 (MQ=255)

           atcAAATTTATTAGTAGTTTGTGCACTAACCGACAAGAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAAc                                                                                                                                   <  2:841444/139‑1 (MQ=255)

            agaagaaaaatttaatgaagaggacaaaaaaacacctaaaattttagaaagtatgtaatttagggaaccataaggcgctacaaacccaataaaaactgttgttataagatttctaTGTATCCAAACTGGAGACATTTAACa                                                                                                                                  <  2:877798‑M1/26‑1 (MQ=255)

               agaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATaa                                                                                                                               <  1:69459‑M1/29‑1 (MQ=255)

               aaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaa                                                                                                                               <  2:563180/141‑1 (MQ=255)

               aaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaa                                                                                                                               <  1:168895/141‑1 (MQ=255)

                aTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaaa                                                                                                                              <  1:1076150/141‑1 (MQ=255)

                 aaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATaaaa                                                                                                                             <  2:273673‑M1/31‑1 (MQ=255)

                    aatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGCCTTTTAACATAAAATTa                                                                                                                          <  1:1039346‑M1/34‑1 (MQ=255)

                      tttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACt                                                                                                                        <  2:902758‑M1/36‑1 (MQ=255)

                       ttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACtt                                                                                                                       <  1:282831‑M1/37‑1 (MQ=255)

                         aatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAt                                                                                                                     <  2:307641‑M1/39‑1 (MQ=255)

                          aGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                                    <  1:795443/141‑1 (MQ=255)

                               gaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCa                                                                                                               <  1:13831‑M1/45‑1 (MQ=255)

                                 ggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccatgagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaa                                                                                                             <  2:929358‑M1/47‑1 (MQ=255)

                                  gacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaa                                                                                                            <  1:459741‑M1/48‑1 (MQ=255)

                                   aCTTACTGACAATAGTGCCAACGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGgggcaatataaacgcgctgatttaatcggacaatc                                                                                                           <  1:837406‑M1/141‑36 (MQ=255)

                                    aaaaaaaacaactaaaattttagaaagtttgtaatttagggacccattagggactccaaacccaataagtactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                                          >  2:416349‑M1/92‑141 (MQ=255)

                                     ttACTGACAATAGTGCCAAAGCCGAATCTAAGCAAGATGATACTGATTTGAAGTTAGTTAGTAATAACGTTTATATGTTATCGACCGTCTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                                         >  1:793887/1‑141 (MQ=255)

                                     ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCTTTCAAAAAGt                                                                                                         >  2:1086905/1‑141 (MQ=255)

                                     ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                                         >  2:53795/1‑141 (MQ=255)

                                     ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                                         <  1:433702/141‑1 (MQ=255)

                                      aaaaaacaactaaaattttagaaagtatgtaatttagggccccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTa                                                                                                        >  1:26791‑M1/90‑141 (MQ=255)

                                            caactaaaattttagaaagtatgtcatatagggacccattagggactccaaaccaaataaatactgtagttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTCCTTATCATTCAAAAAGTAAAACAg                                                                                                  <  2:510007‑M1/58‑1 (MQ=255)

                                               tAGTGCCAAAGCCGAATCTATGAAAGATGATACTGATTTGAAGTAAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATACAAACTGGAGACTTTTAACATGAAATTACTTATCATTCAAAAAGTAAAACAGCaa                                                                                               >  2:604363/1‑140 (MQ=255)

                                               tAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                                               <  1:411499/141‑1 (MQ=255)

                                                 gTGCCGAAGCCGAATCTAAGGAAGATGTTACTGATTTGGAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataa                                                                                             <  2:290007/141‑1 (MQ=255)

                                                  tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                                            >  2:70861/1‑141 (MQ=255)

                                                  tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                                            >  1:909221/1‑141 (MQ=255)

                                                  aaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                                            >  1:94688‑M1/78‑141 (MQ=255)

                                                   aattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAGACAGCataata                                                                                           <  1:301360‑M1/65‑1 (MQ=255)

                                                   aatcttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataata                                                                                           >  2:323861‑M1/77‑141 (MQ=255)

                                                           aaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTACAACAGCATAAAATAAAGGtt                                                                                   <  2:63914‑M1/73‑1 (MQ=255)

                                                              gtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                                >  2:244068‑M1/66‑141 (MQ=255)

                                                              aTCTAAGAAAGATGCTTCTGATTTGAAGTTAGTTAGTCATAACGTTTATACGTGATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                                <  1:383375/141‑1 (MQ=255)

                                                              aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGAACGTTTTGAATCCAAACTGGAGACTTTTGACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                                <  1:218379/141‑1 (MQ=255)

                                                                  gtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACt                                                                            >  1:454163‑M1/62‑141 (MQ=255)

                                                                   agaaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCACAAAGTAAAACAGCATAATATCAAGGTTTATAACtt                                                                           >  1:629451/1‑141 (MQ=255)

                                                                      aagaTGATACTTATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttat                                                                        <  2:894538/141‑1 (MQ=255)

                                                                          tgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatga                                                                    <  2:614970‑M1/141‑75 (MQ=255)

                                                                            gacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattat                                                                  <  2:262524‑M1/90‑1 (MQ=255)

                                                                             acccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc                                                                 >  1:986429‑M1/51‑141 (MQ=255)

                                                                              aCTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACGGGAGAATTACATCATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATAAAGGTTTATAACTttatcattatca                                                                >  1:808325/1‑141 (MQ=255)

                                                                               ccattagggactccaaacccaataaatactgttgttacaacgtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaa                                                               >  1:204053‑M1/49‑141 (MQ=255)

                                                                                 taTTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaata                                                             <  1:242677/140‑1 (MQ=255)

                                                                                 aatatcccgatgtgtagtCATAACGTTTTTTTTTTATCGTCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaata                                                             <  1:519569/127‑1 (MQ=255)

                                                                                   tagggactccaaacccaataaatactgttgttacaaggaccctaTGTATCCAAACTGGAGACATTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAAGCTTATAACTTTATCATTATcaataaa                                                           <  2:1027718‑M1/97‑2 (MQ=255)

                                                                                      ggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAATAGCATAATATCAAAGTTTATAACTTTATcattaccaaacattac                                                        <  2:264098‑M1/100‑8 (MQ=255)

                                                                                          tccaaatccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAGATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCat                                                    >  2:823692‑M1/38‑141 (MQ=255)

                                                                                          tccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCat                                                    <  2:609996‑M1/104‑1 (MQ=255)

                                                                                           tagttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCata                                                   <  1:131347/141‑1 (MQ=255)

                                                                                           tagttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCata                                                   <  1:790061/141‑1 (MQ=255)

                                                                                           tagttagtCATAACGTTTATATGTTATCGACCGTTTTAGATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTAGCATTATCAGTAATACCTCata                                                   <  1:571953/141‑1 (MQ=255)

                                                                                             aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCCtata                                                 >  2:765724‑M1/35‑141 (MQ=255)

                                                                                             aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata                                                 <  1:945385‑M1/107‑1 (MQ=255)

                                                                                             aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata                                                 <  1:338022‑M1/107‑1 (MQ=255)

                                                                                             aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATACAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata                                                 >  2:288474‑M1/35‑141 (MQ=255)

                                                                                              aacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATACCTTTATCATTATCAATAATCACTCATataa                                                <  2:876979‑M1/108‑1 (MQ=255)

                                                                                                 gtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaat                                             >  2:992717/1‑141 (MQ=255)

                                                                                                   cATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAATTTACTTATCATACAAAAAGTAAAACAGCATAATATACAGGTTTCTAACTTTATCATTATCAATAATACCTAATataaaataa                                           >  2:752484/1‑141 (MQ=255)

                                                                                                     aaaCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATAtaaaataaaa                                         <  1:242527/140‑1 (MQ=255)

                                                                                                       aatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTCTAACATAAAATTAATTATCATTCAAAAAGTAAAACAGCATGACAACAAGGTTTATAACTTTAACATTATCAATAATACCTCATATAAAATAAAAtt                                       <  2:606418‑M1/117‑1 (MQ=255)

                                                                                                        atactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttt                                      >  2:250215‑M1/24‑141 (MQ=255)

                                                                                                         gTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttt                                     >  1:892092/1‑141 (MQ=255)

                                                                                                          actgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttta                                    >  2:21192‑M1/22‑141 (MQ=255)

                                                                                                           ctgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                                   <  1:983574‑M1/121‑1 (MQ=255)

                                                                                                            tataTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagg                                  <  1:331899/141‑1 (MQ=255)

                                                                                                              tatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATaaaataacatacatggga                                >  1:1080941/1‑133 (MQ=255)

                                                                                                                tGTTATCGACCGTTTTGTATCCAAACTGTAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAGATAAAATAAAAttttagggact                              <  2:118120/141‑1 (MQ=255)

                                                                                                                 ttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactt                             >  1:452364‑M1/15‑141 (MQ=255)

                                                                                                                 gTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAGCAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactt                             <  1:860162/141‑1 (MQ=255)

                                                                                                                   tATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttt                           <  2:942811/141‑1 (MQ=255)

                                                                                                                    caaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttttt                          <  1:977173‑M1/130‑1 (MQ=255)

                                                                                                                       gACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagg                       <  1:341604/141‑1 (MQ=255)

                                                                                                                          cGTTTTGTATCCAAAGTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac                    >  1:821263/1‑141 (MQ=255)

                                                                                                                          cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac                    >  2:864456/1‑141 (MQ=255)

                                                                                                                          cGTTTTGTATCCAAACTGGAAACTTTTAACATAAAATTACTTATCATACAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATAATCAAAACAACCTCATATAAAATAAAAtcttaggaacgttttaaggaa                    >  2:163015/1‑140 (MQ=255)

                                                                                                                          cGTTTTGTACACAAACTGGAGACTATTAACATCAATTGACAAATCATTCAAATTAAAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac                    >  1:809817/1‑141 (MQ=255)

                                                                                                                            ttttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt                  >  2:838495/1‑141 (MQ=255)

                                                                                                                            ttttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt                  >  2:828373/1‑141 (MQ=255)

                                                                                                                                gTATCCAAACTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaaaaagaata              <  1:899198‑M1/141‑129 (MQ=255)

                                                                                                                                GTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACATTTTAGGGAGtttaaa              <  1:205621‑M1/141‑1 (MQ=255)

                                                                                                                                 TATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaat             <  1:605162‑M1/141‑1 (MQ=255)

                                                                                                                                  ATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaatt            <  2:320590‑M1/141‑1 (MQ=255)

                                                                                                                                  ATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAAGAAAATTTTAGGGACTTTTTAGGGACtttaaatt            <  1:750928‑M1/141‑1 (MQ=255)

                                                                                                                                   TCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaattt           <  1:1052408‑M1/141‑1 (MQ=255)

                                                                                                                                        aCTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaaaaagaatatccttaac      >  2:136285‑M1/1‑5 (MQ=255)

                                                                                                                                        ACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAAATTTAAAAt      >  1:53795‑M1/1‑141 (MQ=255)

                                                                                                                                        ACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCAAACACTAAACTGTGATAACTTTATCATTATCAATAATACCCCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAAATTTAAAAt      >  1:1086905‑M1/1‑141 (MQ=255)

                                                                                                                                         cTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaaaaagaatatccttatca     >  1:1095618‑M1/1‑4 (MQ=255)

                                                                                                                                         cTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaaaaagaatatccttatca     >  2:1053382‑M1/1‑4 (MQ=255)

                                                                                                                                           GGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAAATTTAAAATTAc   >  1:999819‑M1/1‑141 (MQ=255)

                                                                                                                                            gagaCTATTAACATAGGAAAGCTTATTATTCAAAAAGTAAATCGGCGTAGAATCAAGGTTGTTAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGAACTTTTTAGGGACTTTAAATTTAAAATTACa  >  2:812720/1‑141 (MQ=255)

                                                                                                                                            GAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGGCTTTAGATTTAAAATTACa  <  1:538157‑M1/141‑1 (MQ=255)

ACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAAATTTAAAATTACA  >  CP000730/2085169‑2085449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.