New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2085296 =	71 (1.090)	13 (0.220)	10/232	NT	19.5%	intergenic (‑558/‑400)	mapW2/USA300HOU_1944	cell surface protein MapW2/hypothetical protein
	?	CP000730	= 2128343	44 (0.760)					intergenic (+57/+1062)	int/USA300HOU_2011	bacteriophage integrase/possible leukocidin subunit

AAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTT  >  CP000730/2085156‑2085433                                                                                                                                             |                                                                                                                                          ctacatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgtagttataacggttctat                                                                                                                                           <  2:122160‑M1/1‑1 (MQ=255)   acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggccaaaaaaacaaccaaaattttacaaaggatgtaatctacggacccattagggactccaaacccaataaatactgttgttacacggtatctaTGt                                                                                                                                         <  2:674404‑M1/3‑1 (MQ=255)   acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                         <  1:551720‑M1/3‑1 (MQ=255)   acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                         <  2:722288‑M1/3‑1 (MQ=255)    acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaacaactagaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaagggttctaTGTa                                                                                                                                        <  2:249717‑M1/4‑1 (MQ=255)     atccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTAt                                                                                                                                       <  1:644764‑M1/5‑1 (MQ=255)     aaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTAt                                                                                                                                       >  1:359907/1‑141 (MQ=255)          tGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCaaa                                                                                                                                  <  1:132006/141‑1 (MQ=255)           gtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAAc                                                                                                                                 <  1:669705‑M1/11‑1 (MQ=255)           gCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAAc                                                                                                                                 >  2:638862/1‑141 (MQ=255)           gCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAAc                                                                                                                                 >  2:426510/1‑141 (MQ=255)             aaCACCTGAATTAGTCAATTTATTATTAGTTGGTGCACTTACTAACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTg                                                                                                                               <  1:571639/141‑1 (MQ=255)                acTTGCATTAGCAAATTTATTATTTGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGTTACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTGTGTATCCAAACTGgag                                                                                                                            <  1:393362/141‑1 (MQ=255)                acTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGCCAATAGTGCCAAAGCCGAATCTCAGAATGTTGATACTGATTTGTTGCTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGgag                                                                                                                            <  1:379028/141‑1 (MQ=255)                acTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACATTAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGgag                                                                                                                            <  2:405944/141‑1 (MQ=255)                acTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGgag                                                                                                                            <  1:744854/141‑1 (MQ=255)                  ttGCATTAGGAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTgggggc                                                                                                                          <  2:40746/141‑5 (MQ=255)                      tgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACtttt                                                                                                                      <  1:21106‑M1/22‑1 (MQ=255)                      aTTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACtttt                                                                                                                      >  1:709023/1‑141 (MQ=255)                           gaaaTGTAATAGTAGTTGGTGCACGTACTGACAATAGTGCCAAAGCTGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTTGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGTCTTTTAACAt                                                                                                                 <  2:220258/140‑1 (MQ=255)                           cAAATTTATTATCAGTTGGTGCACTTACTGACAATAGTGCCAAATCCGAATCTAAAAAAAATGATACTGATTTTAAGGTAGTTAGTCATACCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACAt                                                                                                                 <  2:86164/141‑1 (MQ=255)                               tttATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaaaa                                                                                                             <  2:582361/141‑1 (MQ=255)                                 aaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatggaatgtagggacccattagggactccaaacccaataaatactggtgttacaagctttctaTGTATCCAAACTGGAGACTTTTAACATAAAAtt                                                                                                           >  2:2935‑M1/109‑141 (MQ=255)                                   ttattaGTTGGGCCACTTACTGCCATTATTGGCAATGCCGAATCTAAGAATGATGTTACTGATTTGAAGTTAGTTAGTTATACCTTTTATATGTTATCGTCCGTGTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                         <  2:254050/141‑1 (MQ=255)                                   atattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCTAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                         <  2:254055/140‑1 (MQ=255)                                      taatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTa                                                                                                      <  1:597627‑M1/38‑1 (MQ=255)                                      taatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTa                                                                                                      <  1:390619‑M1/38‑1 (MQ=255)                                        aGTTGGTGCACGTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                    <  2:454600/141‑1 (MQ=255)                                             gaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCa                                                                                               >  1:722288‑M1/97‑141 (MQ=255)                                              tGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaa                                                                                              >  1:601625/1‑141 (MQ=255)                                                 acaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaaa                                                                                           >  1:543692‑M1/93‑141 (MQ=255)                                                 aCTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaaa                                                                                           >  2:213294/1‑141 (MQ=255)                                                  caaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                          >  1:486372‑M1/92‑141 (MQ=255)                                                   ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                         >  1:322540/1‑141 (MQ=255)                                                    tACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAGTTACATATCATTCAAAAAGTa                                                                                        <  1:405790/141‑1 (MQ=255)                                                      cTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAACCTGGCGACTTTTAACCTAAAATTACTTATCATTAACAAAGTgaa                                                                                      >  1:117735/1‑141 (MQ=255)                                                         aCAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGATAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACa                                                                                   >  2:561102/1‑141 (MQ=255)                                                             tAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                               <  1:63373/141‑1 (MQ=255)                                                             tAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                               <  1:228262/141‑1 (MQ=255)                                                             tAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                               <  1:247524/141‑1 (MQ=255)                                                             aaGTGCTAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATTGAAACGGGAGCTTTCCGACAGAGAAGTACTTATCATTCAAAAAGTAAAACAGCat                                                                               <  1:778454/140‑1 (MQ=255)                                                                tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                            <  1:639447/141‑1 (MQ=255)                                                                  ccAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAatat                                                                          <  1:649639/141‑1 (MQ=255)                                                                     aaGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAACAAGTAAAACAGCATAATATCaa                                                                       <  1:612552/141‑1 (MQ=255)                                                                       gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATTACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg                                                                     <  2:694183/141‑1 (MQ=255)                                                                       gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg                                                                     >  1:369244/1‑141 (MQ=255)                                                                       gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg                                                                     <  2:602774/141‑1 (MQ=255)                                                                        ccGAATCTGAGAAAGATGATACTGACTTGAAGTTAGTTAGTCATAACGTTTATATGTTATGGACCGTTTTGTATCCAAACTGGCGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAACACAGCATAATATCCAGGt                                                                    >  2:275268/1‑141 (MQ=255)                                                                        ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAGCATAAAATTACTTATCATTCAAAAAGTAAAACAGCTTAATATCAAGGt                                                                    >  1:20514/1‑141 (MQ=255)                                                                        ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                    <  2:765973/141‑1 (MQ=255)                                                                        ccGAATCGAAGAAAGGTGATAGTGGTTTGAGGTTAGTTAGTCATAACGTTTATATGTTATCGACCGAGTTGTATCCAAACTGGGGGCTTGTAACATAAAATTTCTTATCATTCAAAAAATAAAACAGCCTAATATAGAGGt                                                                    >  2:221051/1‑141 (MQ=255)                                                                          gAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGttt                                                                  >  2:367666/1‑141 (MQ=255)                                                                          gAATCTAAGAAAGATAATACTGCACTTAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATAACAAGGttt                                                                  >  1:190188/1‑141 (MQ=255)                                                                           aaTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAACGTAACACACCATAATATTAAGGttga                                                                 >  2:670368/1‑139 (MQ=255)                                                                           aaTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTta                                                                 >  2:612536/1‑141 (MQ=255)                                                                            gtatgtaatttagggccccattagggactccaaacccaatacatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                >  2:325853‑M1/66‑141 (MQ=255)                                                                            aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                <  2:405179/141‑1 (MQ=255)                                                                                aagaaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACt                                                            >  2:174942/1‑141 (MQ=255)                                                                                  gaaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACttt                                                          <  2:477694/141‑1 (MQ=255)                                                                                   aaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTtta                                                         <  2:516763/141‑1 (MQ=255)                                                                                   aaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTtta                                                         >  1:446021/1‑141 (MQ=255)                                                                                         gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattt                                                   >  1:9344/1‑140 (MQ=255)                                                                                         gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatta                                                   >  2:80632/1‑141 (MQ=255)                                                                                           tACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc                                                 <  1:26776/141‑1 (MQ=255)                                                                                              cattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaat                                              >  1:44749‑M1/48‑141 (MQ=255)                                                                                               gATTTGAAGTTAGTTAGGCAGAACGTTTATATGTCATCGACCCTTTTGTACCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATCTCAAGGTTTATAACTTTATCATTATCaata                                             >  2:580080/1‑141 (MQ=255)                                                                                                 tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat                                           <  1:446409‑M1/97‑1 (MQ=255)                                                                                                 cagggaccccaaacctgataagttctgttgttacaaggtttctaTGTATCCAAACAGGAGAATTTTAGCATAAAATTACTTATCATTCAAAAAGTACAACAGCATAATATCAAGGATTATAACTTTATCATTATCaataat                                           <  2:311599‑M1/97‑1 (MQ=255)                                                                                                   tGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAc                                         <  1:213294/141‑1 (MQ=255)                                                                                                      agttagttAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTc                                      <  2:444725/141‑1 (MQ=255)                                                                                                      agttagttAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTc                                      <  2:653146/141‑1 (MQ=255)                                                                                                       gttagttaGTCATAACGATTATATGTGATCGACCGTTTTGTATCCAAACTGGAGACTTGGAACATAAAATTACGTAGCATGCAAAAAGTAAAACAGCATAATATCAAGGTAGATAACTTTATCATGAGCAAAAAGACCTCa                                     >  1:271937/1‑141 (MQ=255)                                                                                                                tCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaata                            >  1:222661/1‑141 (MQ=255)                                                                                                                    aaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATaaaataaaat                        >  2:15862‑M1/26‑141 (MQ=255)                                                                                                                    aaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATaaaataaaat                        >  2:682029‑M1/26‑141 (MQ=255)                                                                                                                    aaCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATaaaataaaat                        >  1:35539/1‑141 (MQ=255)                                                                                                                    aaCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATaaaataaaat                        <  1:426510/141‑1 (MQ=255)                                                                                                                    aaCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATAAAGGTTTATAACTTTATCATTATCAATAAAACATACTATaaaataaaat                        >  2:576434/1‑141 (MQ=255)                                                                                                                       gTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttt                     >  1:241979/1‑141 (MQ=255)                                                                                                                       atttccacgTTATTGACCGTTTTGTATCCAAACTGGAAACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttt                     <  2:354834/133‑1 (MQ=255)                                                                                                                        tttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACTTAATCTAAAATAAAAtttta                    >  1:712029/1‑141 (MQ=255)                                                                                                                         ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                   >  2:705263/1‑141 (MQ=255)                                                                                                                         ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                   >  1:473945/1‑141 (MQ=255)                                                                                                                          tataTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATATTATCACATATAAAATAAAAttttagg                  <  2:761163/141‑1 (MQ=255)                                                                                                                          tataTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagg                  <  2:709023/141‑1 (MQ=255)                                                                                                                            tatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggga                >  2:300368/1‑141 (MQ=255)                                                                                                                            tatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggga                >  2:426570/1‑141 (MQ=255)                                                                                                                             atGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCCCATATACAATAAAAtttcagggac               >  2:99735/1‑141 (MQ=255)                                                                                                                                     gACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagg       <  1:9652/141‑1 (MQ=255)                                                                                                                                       ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga     >  2:531108/1‑141 (MQ=255)                                                                                                                                       ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga     >  1:243003/1‑141 (MQ=255)                                                                                                                                       ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga     >  2:638290/1‑141 (MQ=255)                                                                                                                                        cGTTTTGTATCCAAACTGGAGCCTTTTAACATAAAATTACTTATCATTCCAAAAGTAAAACAGCATAATATCAAGGTTTATAACATTATAATTATCAATAATAGCTCATATAAAAAAAAAatttaggagcgttttagggcc    >  2:121620/1‑139 (MQ=255)                                                                                                                                        cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac    >  2:143267/1‑141 (MQ=255)                                                                                                                                          ttttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt  <  1:21354/141‑1 (MQ=255)                                                                                                                                          ctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt  >  2:21106‑M1/4‑141 (MQ=255)                                                                                                                                          ctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt  <  2:634316‑M1/138‑1 (MQ=255)                                                                                                                                             |                                                                                                                                          AAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTT  >  CP000730/2085156‑2085433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.