New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2085296 =	66 (0.940)	5 (0.080)	5/232	NT	8.0%	intergenic (‑558/‑400)	mapW2/USA300HOU_1944	cell surface protein MapW2/hypothetical protein
	?	CP000730	= 2128343	56 (0.900)					intergenic (+57/+1062)	int/USA300HOU_2011	bacteriophage integrase/possible leukocidin subunit

TACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  CP000730/2128205‑2128483                                                                                                                                           |                                                                                                                                             tACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtg                                                                                                                                            >  1:772641‑M2/1‑139 (MQ=255)  aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtat                                                                                                                                           <  2:269818‑M2/141‑4 (MQ=255)       cgggtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCa                                                                                                                                      <  2:66485/138‑1 (MQ=255)       cGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGCAGAGGACAAAAAAACAACTAAAATTTTATAAAGTAGTTAATTTGGTGACCCATTAGGGACTCCAAACCCAAAAAATACTGTTGTTACAAGGTTTCTGtttatcca                                                                                                                                      <  1:801729‑M2/141‑9 (MQ=255)       cGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatcca                                                                                                                                      <  1:811339‑M2/141‑9 (MQ=255)       cGTGTATTCTCATTTGTAAGAATAAAAATTTAATGAAGAGAACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGTACCCATGAGGGACTCCAAACCCAATAAGTACTGTTGTTACAAGGTTTCTAtgtatcca                                                                                                                                      >  2:43024‑M2/1‑133 (MQ=255)         tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaa                                                                                                                                    <  1:174858‑M2/141‑11 (MQ=255)         tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAggtatccaaa                                                                                                                                    <  2:451821‑M2/141‑11 (MQ=255)              tcttATTTGTTAGAAAAAAAATTTAATGAAGTGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTggg                                                                                                                               <  2:42040/141‑1 (MQ=255)                tcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggaga                                                                                                                             <  2:112820‑M2/141‑18 (MQ=255)                 cATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGc                                                                                                                            <  1:10863/141‑1 (MQ=255)                 cATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGc                                                                                                                            >  1:46430/1‑141 (MQ=255)                 cATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGc                                                                                                                            >  1:837595/1‑141 (MQ=255)                                 aaTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAACAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaatta                                                                                                            >  1:740833‑M2/1‑107 (MQ=255)                                 aaTTTAATAAGGAGAACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGa                                                                                                            <  1:732883/141‑1 (MQ=255)                                   tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAAAGCGCTGAtt                                                                                                          >  1:747754/1‑141 (MQ=255)                                   tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTACTAtgtatccaaactggagacttttaacataaaattact                                                                                                          <  2:366021‑M2/141‑37 (MQ=255)                                      aaTGAAGAGGACAAAAAAACAACTAAAATATTAGAAAGTATGTAATTTAGGGACCCATGAGGGACTTCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGTCAATATATTCGCGCAGAGTTaa                                                                                                       >  2:500100/1‑141 (MQ=255)                                       aTGAAGAGGACAGAAAAACAATTAAAATTGTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTGGTTACAAGGGATATATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAAt                                                                                                      >  1:433675/1‑141 (MQ=255)                                          aaaagcaCAAAAAAACAACTAAAATTTGACAAAGTATGTAAAGTAGAGACCCAGTAGGGACTTCAACCCCAATAAAGACTGTTTTTACAAGGTTTTTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCgg                                                                                                   <  2:270933/135‑1 (MQ=255)                                          aaGATGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCgg                                                                                                   <  1:50678/141‑1 (MQ=255)                                          aaGAGAACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCgg                                                                                                   <  2:677351/141‑1 (MQ=255)                                           agacGACAAAAAAACCACCAAAACCTTAGAAAGCATGTAATTGAGGGCCGCATTAGGGACTCCAAACCCAATAAATACGGTTGTTACAATGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGa                                                                                                  <  2:368242/141‑1 (MQ=255)                                                  aaaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtctt                                                                                           >  2:703001/1‑141 (MQ=255)                                                  aaaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCCATGATTTAATCGGACAAtctt                                                                                           >  2:313090/1‑141 (MQ=255)                                                   aaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtcttc                                                                                          >  2:740393/1‑141 (MQ=255)                                                    aaaagCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtcttct                                                                                         <  1:259242/141‑1 (MQ=255)                                                    aaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtcttct                                                                                         >  1:450930/1‑141 (MQ=255)                                                       aacaacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTtat                                                                                      >  1:36853/1‑141 (MQ=255)                                                           acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAAGATAAACGCGCTGATTTAATCGGACAAtgtgagtatttta                                                                                  >  1:641808/1‑129 (MQ=255)                                                           acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGCACCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTa                                                                                  <  1:161372/141‑1 (MQ=255)                                                             tAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTaaa                                                                                >  1:756176/1‑141 (MQ=255)                                                             tAAAATTCTAGAAAGTAGGTAAGTTAGGGACCGATGAGGGACTCCAAACCCAATAAATACTGATGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTaaa                                                                                <  2:606011/141‑1 (MQ=255)                                                             tAAAATATTAGAAAGTATGTAATTTAGGGGCCCATTAGGGACTCCAAACCCAATAAATACTGTGGTTACACGGTGTCTATATATCCAAACTCGGGGCAAAATAAACCCGCTGATTTAATCGGACAATCTTCTTATATTaaa                                                                                >  2:700082/1‑141 (MQ=255)                                                                 aTTTGAAAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAaata                                                                            <  2:377279/141‑1 (MQ=255)                                                                   tttAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAaataat                                                                          >  1:492418/1‑141 (MQ=255)                                                                     tAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCCCACCAACATCAGCCCGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatga                                                                        <  1:64193/141‑1 (MQ=255)                                                                       gAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATCTCACCGAGCTGATTTACTCGGACACTCTTCTTATATTAAAaatacgcatt                                                                      >  2:789722/1‑135 (MQ=255)                                                                        aaaGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATCCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGGTTTAATCGGACACTCTTATTATATTAAAACTACTGAGGt                                                                     >  1:493155/1‑141 (MQ=255)                                                                        aaaGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGt                                                                     >  2:380434/1‑141 (MQ=255)                                                                          aGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCg                                                                   >  1:580651/1‑141 (MQ=255)                                                                           gTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGt                                                                  >  1:48633/1‑141 (MQ=255)                                                                             aTGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataa                                                                >  2:309021‑M2/1‑63 (MQ=255)                                                                               gTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAata                                                              <  1:87654/141‑1 (MQ=255)                                                                               gTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAata                                                              <  2:756176/141‑1 (MQ=255)                                                                                   tttAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCa                                                          >  2:711712/1‑141 (MQ=255)                                                                                       gggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcatt                                                      <  2:551256‑M2/141‑89 (MQ=255)                                                                                        ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                     >  1:462722/1‑141 (MQ=255)                                                                                        ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                     <  2:741302/141‑1 (MQ=255)                                                                                        ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                     <  1:33662/141‑1 (MQ=255)                                                                                           cccATTAGGGACTCCAAACCCAAGAAAGACTGTTGTTACAAGGTTTCTAtctacccaaactggagacctttaacataaaattactgatcattcaaaaagtaaaacagcagaatatcaaggtttataactttatcattatca                                                  >  1:30764‑M2/1‑49 (MQ=255)                                                                                               ttAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCAGTTg                                              >  1:628534/1‑141 (MQ=255)                                                                                                tAGGGACTCCATACCCAATAAATACTGTTGTTAAACGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGGAATATTCAATGAAGCATTTGa                                             <  1:434263/141‑1 (MQ=255)                                                                                                      cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       <  1:10438/141‑1 (MQ=255)                                                                                                      cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       >  2:704893/1‑141 (MQ=255)                                                                                                      cTCCAAACCCAAGAAATACTGTTGTTACAAGGTTTCAATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTGATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                       <  1:110849/141‑1 (MQ=255)                                                                                                         cAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGc                                    <  2:174858/141‑1 (MQ=255)                                                                                                          aaaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCa                                   >  1:81023/1‑141 (MQ=255)                                                                                                          aaaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCa                                   >  1:308340/1‑141 (MQ=255)                                                                                                           aaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAt                                  >  2:300243/1‑141 (MQ=255)                                                                                                           aaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAAAGGTGCac                                  >  2:531465/1‑140 (MQ=255)                                                                                                           aaCCCAATAAATACTGTTGTTACAAGGTTTACATGGATCCAAACTGGGGAAATTCTATAGGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAt                                  >  2:805125/1‑141 (MQ=255)                                                                                                            aCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATc                                 <  1:692918/141‑1 (MQ=255)                                                                                                             cccAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCa                                >  2:664518/1‑141 (MQ=255)                                                                                                               caatcaatACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTGATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGCGCTTCAgc                              <  2:830623/141‑2 (MQ=255)                                                                                                                   aaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACaaa                          >  1:487257/1‑141 (MQ=255)                                                                                                                     ataCGGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATTAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATAGTCAATGAAGCATTTGATAATGATGCATCAGACAAatt                        >  1:590033/1‑141 (MQ=255)                                                                                                                       aCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGTAGCATTTGATAATGGTGCATCAGACAAattat                      >  1:211824/1‑141 (MQ=255)                                                                                                                       aCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAaatat                      >  2:54337/1‑141 (MQ=255)                                                                                                                         tgttgtTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAAttatta                    <  2:48633/141‑1 (MQ=255)                                                                                                                            tgttACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGt                 <  2:36133/141‑1 (MQ=255)                                                                                                                                   aGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTATGTAATGTGa          >  1:168824/1‑141 (MQ=255)                                                                                                                                    ggTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaa         >  2:108348/1‑141 (MQ=255)                                                                                                                                      tttCTATGTATCCGAACTGGGGGCAATATAAACGGGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaa       <  1:457681/141‑1 (MQ=255)                                                                                                                                       ttCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGAAATGTGaaaaa      >  2:473096/1‑141 (MQ=255)                                                                                                                                        tCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaaaa     >  2:535893/1‑141 (MQ=255)                                                                                                                                         cTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAg    >  2:474103/1‑141 (MQ=255)                                                                                                                                         cTATGTATCCAAACCGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAGCAGACAAATTATTAAGTAATGTGAAAAAAg    <  1:829196/141‑1 (MQ=255)                                                                                                                                           aTGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGaa  >  2:747985/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                             TACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  CP000730/2128205‑2128483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.