Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP000730 | 1,987,676 | A→G | 5.5% | intergenic (+258/+38) | USA300HOU_1847 → / ← USA300HOU_1848 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP000730 | 1,987,676 | 0 | A | G | 5.5% | 205.3 / 2.2 | 72 | intergenic (+258/+38) | USA300HOU_1847/USA300HOU_1848 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (37/30); new base G (2/2); total (40/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 |
GCCCCAACACTGAAACTAGCAGAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCTTTTAAATCTTCAAAATCCGTTACC > CP000730/1987543‑1987813 | gCCCCAACACTGAAACTAGCAGAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGata > 1:467283/1‑141 (MQ=255) cacTGAAACGAGCCGAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATGTGATATATGTTCTATACTATACATTATTTACATGATAAATAACt < 2:413072/141‑1 (MQ=255) aacTGAAACTAGCAGAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACt < 2:362704/140‑1 (MQ=255) tGAAACTAGCAGAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACACAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTGCATGATAAATAACTGaa > 2:253964/1‑141 (MQ=255) tGAAACTAGCAGAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTGCATGATAAATAACTGaa > 2:261148/1‑141 (MQ=255) gAAACTAGCAGAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGCAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAat < 1:67514/141‑1 (MQ=255) aaCTAGCAGAAATGCAGCTTCTTTGAATAGAAAACCAAAGCTAGGTAACAACATGTTACCTAACTTCATATTCAAGTTAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAatat < 1:743267/141‑1 (MQ=255) aaCTAGCAGAAAGTCAGCTCCTATGAATATAATAAAAAAGCTATGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAatat < 1:645349/141‑1 (MQ=255) aaCTAGCAGAAAGGCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGATACCTAACTTCATATTCAAGATAATCAAGCCTATTTGATAAATGTTCTATACTATACATTAGTTACATGATAAATAACTGAatat > 2:220856/1‑141 (MQ=255) cTAGCAGAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTa < 2:232500/141‑1 (MQ=255) agaaGAAAGCCAACTTCTATAAATATAATAAAAAATCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTaca < 2:457171/138‑1 (MQ=255) aGCAGAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTaca < 2:217220/141‑1 (MQ=255) aGCAGAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTaca > 1:425397/1‑141 (MQ=255) gAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAAt > 1:406485/1‑141 (MQ=255) gAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAAt > 2:220916/1‑141 (MQ=255) aaaGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTCCATGATAAATAACTGAATATTACACAAtt > 2:122612/1‑141 (MQ=255) aGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATtat < 2:335081/141‑1 (MQ=255) tCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTataa < 1:190916/141‑1 (MQ=255) aGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTataata > 1:72413/1‑141 (MQ=255) gCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATAc > 1:695929/1‑141 (MQ=255) gAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTactga > 2:239512/1‑141 (MQ=255) atatAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTactgact < 1:416689/141‑1 (MQ=255) ataataAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGt < 2:209249/141‑1 (MQ=255) taataaAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGtc > 1:279405/1‑141 (MQ=255) aaataaAAAAGCTAGGTAACAAAAGGATACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGtc < 2:652189/140‑1 (MQ=255) taaAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGAAAATAAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATACCTGAATATTACACAATTATAATACTTTACTGACTGtcttc > 2:180689/1‑141 (MQ=255) aaaaaaGCTAGCTAAAACATTGCTACCTAATTACATATTCAAGATAATCAAGCCTAGTTGATATATGTTCTAAACTATACATTATTTACATGATAAATAACTGAATATTACACATTTATAAGACTTTACTGACTGtcttct < 1:551237/141‑1 (MQ=255) gaaaGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACCATTATAATACTTTTCTGACTGTCttcttc > 2:433938/2‑141 (MQ=255) aaGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAg < 2:725937/141‑1 (MQ=255) aGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATAAATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGAATCTCTCCTTCaag > 2:105643/1‑139 (MQ=255) gCTAGGTCAACAAATGCTACCTACATTTTCAATGGAGATATGCAATTTTACTTGATTTAAGTTCTATACGATACATGATTTACTTGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGat > 2:153529/1‑140 (MQ=255) aatAGGAAACAAAATGCTTTCTAACTTCAGATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTGTACTGACTGTCTTCTTCAgta < 2:532657/139‑3 (MQ=255) aGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTAAGAAttt > 2:741886/1‑140 (MQ=255) gTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATCATACTTTACTGACTGTCTTCTTCAGAAttctt > 1:636384/1‑141 (MQ=255) aaCAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAAttctttt > 1:707682/1‑141 (MQ=255) aaCAAAATGCTACCTAACTGCATATGCAAGATAATAACTCCTATGTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTATACAATTATAATACTTTACTGCTTGTCTTCTTCAGAAttgtttt > 1:424210/1‑141 (MQ=255) aCAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACGCAATTATAATACTTTACTGACTGTCTTCTTCAGAAttcttttc < 2:35160/141‑1 (MQ=255) ccaaaTTCTAACTAACTTCATATTCAAAATAATCAATCCTATGTCATATATGTTCTATACTATACATTATTTACCTTATAACTAACGGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAAttcttttct < 1:242294/139‑1 (MQ=255) aaaTGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATACTTTTCTTg > 1:214333/1‑141 (MQ=255) tGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACACTTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTTAta > 1:271726/1‑140 (MQ=255) gCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCa < 1:220916/141‑1 (MQ=255) cTAACTTCATATTCAAGATGATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTg < 1:494856/141‑1 (MQ=255) tAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTAACTGTCGTCTTCAGAATTCTTTTCTTGAGCATTTTGa > 1:270788/1‑141 (MQ=255) aCTTTATATTCAAGATAATGTATTCTAATTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTGCTTCAGAATTCTTTTCTTGATCATTTTGATc < 1:572873/141‑1 (MQ=255) tCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATTATTTTGATCagg > 2:90007/1‑140 (MQ=255) tCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCaga < 1:673138/141‑1 (MQ=255) atatTCAAGATAATCCATACATTATAAAATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAgaga > 1:571315/1‑141 (MQ=255) atatTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAgaga > 1:491137/1‑141 (MQ=255) cAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGt > 1:757491/1‑141 (MQ=255) cAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGt > 2:286241/1‑141 (MQ=255) aatcCTATTTGATATATGTTCTATACGATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCtt > 2:90341/1‑141 (MQ=255) atcCTACTCGATATATGCTCTATCCTATCCATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACCGACTGTCTTCTTCAGAACTCTTTTCTTGATCATCTTGATCAGAGATTTGTTCCATTTCtta < 2:71225/141‑2 (MQ=255) cTATTTGATATATGTTTTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACCGTCTTCGTCGGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTAcc < 1:147459/141‑1 (MQ=255) tATTTGATATAGGTTGTATAATATACATGATTTACATGATAAATAACTGAAGATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCt < 2:636384/141‑1 (MQ=255) aTTTGATAAATGTTTTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTa < 1:24004/141‑1 (MQ=255) tttGATATATGTTCTATACTATACATTATTTGCATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTTTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTaa < 1:253964/141‑1 (MQ=255) tttGATATATGTTCTATACTATACATTATTTGCATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTaa < 1:261148/141‑1 (MQ=255) tttGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTaa < 1:168796/141‑1 (MQ=255) atatatGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCt > 1:552878/1‑141 (MQ=255) tatGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCtttt > 2:545982/1‑141 (MQ=255) tGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCTTTTaa > 1:147502/1‑141 (MQ=255) tGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCTTTTaa > 1:411385/1‑141 (MQ=255) ttCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATTATACTTTACTGACTGTCTTCTTCAGAATTCTTATCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCTCTTAAAt < 2:488277/141‑1 (MQ=255) ctatactataCATTATTTAGATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTTTTTTAAATCt > 1:411330/1‑141 (MQ=255) atactatacATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCTTTTAAATCTTc < 2:72413/141‑1 (MQ=255) actatacATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCTTTTAAATCTTCaa > 2:326925/1‑141 (MQ=255) actatacATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCTTTTAAATCTTCaa > 1:313058/1‑141 (MQ=255) ctatacATTATTTACTTTATAAAGAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCTTTTAAATCTTCaaa < 1:56899/141‑1 (MQ=255) ttatcTACATGATAAATAACTGAATATGACACATTTATAATACTTTTCTGACTGTTTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCAATTCTTTACCTAATTCTTTTAAATCTTCAAAATCCGtt > 1:546262/1‑141 (MQ=255) tattTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTGTTTTAAATCTTCAAAATCCGttc > 2:60350/1‑140 (MQ=255) tattTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCTTTTAAATCTTCAAAATCCGTTa > 2:676928/1‑141 (MQ=255) tttACATGATAAATAACTGAATATTACACAATTATAATGCTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTAATCAGAGATTTGTTCCATTTCTTTACCTAATTCTTTTAAATCTACAAAATCCGTTAcc > 2:410940/1‑141 (MQ=255) | GCCCCAACACTGAAACTAGCAGAAAGTCAGCTTCTATGAATATAATAAAAAAGCTAGGTAACAAAATGCTACCTAACTTCATATTCAAGATAATCAATCCTATTTGATATATGTTCTATACTATACATTATTTACATGATAAATAACTGAATATTACACAATTATAATACTTTACTGACTGTCTTCTTCAGAATTCTTTTCTTGATCATTTTGATCAGAGATTTGTTCCATTTCTTTACCTAATTCTTTTAAATCTTCAAAATCCGTTACC > CP000730/1987543‑1987813 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |