New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2085296 =	39 (0.690)	12 (0.240)	12/232	NT	21.9%	intergenic (‑558/‑400)	mapW2/USA300HOU_1944	cell surface protein MapW2/hypothetical protein
	?	CP000730	= 2128343	51 (1.010)					intergenic (+57/+1062)	int/USA300HOU_2011	bacteriophage integrase/possible leukocidin subunit

ACTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  CP000730/2128203‑2128483                                                                                                                                             |                                                                                                                                             aCTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTa                                                                                                                                              >  2:74394/1‑141 (MQ=255)  cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAt                                                                                                                                             >  1:370081‑M2/1‑140 (MQ=255)  cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTAGTTACAAGGTTTCTAt                                                                                                                                             <  2:550234‑M2/141‑2 (MQ=255)   tACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGAATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTAACAAAGTATCTAtg                                                                                                                                            <  2:218030‑M2/141‑3 (MQ=255)     cATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgta                                                                                                                                          >  1:649782‑M2/1‑137 (MQ=255)       tCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAGACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc                                                                                                                                        <  1:442706‑M2/141‑7 (MQ=255)       tCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc                                                                                                                                        >  1:212332‑M2/1‑135 (MQ=255)        ccggtaattctcaATTCTTAGAAGAAAAATTTACTGAAGAGGACAAAAAAACAGCTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatcc                                                                                                                                       >  2:367007‑M2/7‑134 (MQ=255)         cGTGCATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatcca                                                                                                                                      >  1:606911‑M2/1‑133 (MQ=255)           tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaa                                                                                                                                    <  1:204374‑M2/141‑11 (MQ=255)           ggtatgtgtatttgttagaAGAAAAATTGAATGAAGAGGAGAAAAAAACAACTAAAATTTTAGAAAGTATGTAATGTAGGGACCCATTAGGGACTCCAAGCCCGATAGATACTGTTGTTACAAGGTTTCTAtgtatccaaa                                                                                                                                    >  2:583243‑M2/10‑131 (MQ=255)            gtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaac                                                                                                                                   >  1:617527‑M2/1‑130 (MQ=255)            ataTTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaac                                                                                                                                   <  2:433310‑M2/140‑12 (MQ=255)             tATTCTCATATGTTAGAAGAAAAATTTTATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTGTAtgtatccaaact                                                                                                                                  <  2:243487‑M2/141‑13 (MQ=255)              tttatcATTTTTGAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACGAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTg                                                                                                                                 <  1:465338/137‑1 (MQ=255)              aTTCTCATTTGTTAGAAGAAAAATTTAATAAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactg                                                                                                                                 >  2:77609‑M2/1‑128 (MQ=255)                 aacaaTTGTTAGAAGAAAAAATTAAAAAAAAAAAAAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggag                                                                                                                              >  2:423356‑M2/3‑125 (MQ=255)                   cATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATATATCCAAACTggggga                                                                                                                            >  2:482643/1‑140 (MQ=255)                        gTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactgcttacttttg                                                                                                                       >  2:577354‑M2/1‑118 (MQ=255)                         ttAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAAtata                                                                                                                      >  2:383484/1‑141 (MQ=255)                         ttAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAAACCAATAAATACTGTTGTTACAAGGTTTCTAGGTATCTAAACTGGGGGCAAtata                                                                                                                      >  1:483488/1‑141 (MQ=255)                          tAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATaa                                                                                                                     <  1:606043/141‑1 (MQ=255)                            aaagaaAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAAc                                                                                                                   <  2:237313/140‑1 (MQ=255)                             aagaaAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAAcg                                                                                                                  >  2:454559/1‑141 (MQ=255)                             aagaaAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAAcg                                                                                                                  >  1:191924/1‑141 (MQ=255)                                aaaaaTTTAAGGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACgcgc                                                                                                               <  2:360601/141‑1 (MQ=255)                                 aaaaTTTAAAGAACAAGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCt                                                                                                              <  2:493522/141‑1 (MQ=255)                                    aTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattaa                                                                                                           <  1:163381‑M2/141‑36 (MQ=255)                                    aTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAAGGCGCTGAt                                                                                                           >  1:647483/1‑141 (MQ=255)                                        aaTGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTaa                                                                                                       >  1:337393/1‑141 (MQ=255)                                        aaTGAAGAGGACAAAAAAACAACCAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTaa                                                                                                       <  1:113886/141‑1 (MQ=255)                                             agagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGa                                                                                                  <  2:250397/141‑1 (MQ=255)                                             agagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGa                                                                                                  <  1:611157/141‑1 (MQ=255)                                                  aCAAAAAAACAACTACAATGTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTTGGGTTAATATAAACGCGCTGTTTTAATCGGACAAtc                                                                                             <  1:260233/141‑1 (MQ=255)                                                  aCAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtc                                                                                             <  2:548476/141‑1 (MQ=255)                                                     aaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagta                                                                                          >  1:246167‑M2/1‑89 (MQ=255)                                                      aaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAAtcttct                                                                                         >  1:121701/1‑141 (MQ=255)                                                       aaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCAATAAGGGACTCCAAACCGAGTAAATACTGTTGTTACAAGGGTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATGGGACAATcttctt                                                                                        >  2:641708/1‑141 (MQ=255)                                                         accaacTAAAATGTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTtat                                                                                      <  1:100719/139‑1 (MQ=255)                                                           caacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTatat                                                                                    >  2:462558/1‑141 (MQ=255)                                                            aacTAAAATTTTGGAAAGTATGTAATTTAGGGATCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAAACGGACAATCTTCTTATAtt                                                                                   <  2:374954/141‑1 (MQ=255)                                                             acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTa                                                                                  >  1:79/1‑141 (MQ=255)                                                                  aaTTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataata                                                                             >  1:614995‑M2/1‑76 (MQ=255)                                                                    ttttAGAAATGATGTAAGTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAaataa                                                                           <  2:408415/141‑1 (MQ=255)                                                                    ttttAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAcataa                                                                           <  2:442706/141‑1 (MQ=255)                                                                          aaaGTATGTAATTTAGGGACCAACTAAGGACTCCAAACCCCTTCTTGGGTCAAAGGACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGt                                                                     <  1:482643/141‑1 (MQ=255)                                                                          aaaGTATGTAATCTAGGGACCCATTAGGGCCTCTAAACCCACTAAATACTGTTGTTACAAGGTTTCTATGTATCCAAGCTGGGGGCAATATAAACGCGCTGATTTAATCGTACAATCTTCTGATATTAAAAATAATGATGt                                                                     <  2:374970/141‑1 (MQ=255)                                                                           aagttggTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTc                                                                    <  1:54197/135‑1 (MQ=255)                                                                           aaGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTATTACAAGGATTATATGTATCCAAACTGGGGGCAATATAAACGGGCTGAGTTGATCGGACAATCTTCTTTTGTTAAAAATGATGATGtt                                                                    >  1:57123/1‑140 (MQ=255)                                                                                tGTAATGTAGGTAGCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTGCTTATCTTAAAAATAATGATGTCGTAat                                                               <  1:296786/141‑1 (MQ=255)                                                                                               cATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGTTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCAtt                                                <  1:474593/141‑1 (MQ=255)                                                                                                tttaGGGACTCTAAACCCTATAAATACTGTTGTTACCAGGTGTCTAagtctccaaactggagagttttaacataaaattacttatcatacaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaata                                               >  2:351863‑M2/2‑46 (MQ=255)                                                                                                  tAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGa                                             >  2:351069/1‑141 (MQ=255)                                                                                                      gACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCACTGAAGCATTTGATAAt                                         <  1:398141/141‑1 (MQ=255)                                                                                                         tCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCACACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATACTGATGTCGTAATATTCAATGAAGCATTTGATAATGGt                                      >  2:112184/1‑141 (MQ=255)                                                                                                         tCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGt                                      >  1:630620/1‑141 (MQ=255)                                                                                                         tCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGt                                      <  1:341027/141‑1 (MQ=255)                                                                                                         tCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTCGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTACATTAAAAACAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGt                                      <  1:277507/141‑1 (MQ=255)                                                                                                          ccAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcata                                     >  1:351333‑M2/1‑36 (MQ=255)                                                                                                          ccAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTg                                     <  2:169242/141‑1 (MQ=255)                                                                                                           cAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTga                                    >  1:29989/1‑140 (MQ=255)                                                                                                            aaaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGCTAATGGTgga                                   >  2:460255/1‑139 (MQ=255)                                                                                                             aaCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatctttatcaataatacctcatctaa                                  <  2:348841‑M2/141‑109 (MQ=255)                                                                                                             aaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCAt                                  >  2:250678/1‑141 (MQ=255)                                                                                                              aCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaa                                 <  1:298760‑M2/141‑110 (MQ=255)                                                                                                                 cAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATGTTCAATGAAGCATTGGATAATGGTGCATCAGa                              >  1:49287/1‑141 (MQ=255)                                                                                                                 cAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGAGAATGGTGCAGCAGa                              >  1:263829/1‑141 (MQ=255)                                                                                                                 cAATAAATACTGTTGTTACAAGGTTTCTATGGATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGa                              <  1:6324/141‑1 (MQ=255)                                                                                                                     aaataCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaaataaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaat                          >  2:596616‑M2/1‑25 (MQ=255)                                                                                                                     aaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACaaa                          >  2:127897/1‑141 (MQ=255)                                                                                                                      aataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAat                         >  2:475615/1‑141 (MQ=255)                                                                                                                       ataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAatt                        <  1:462558/141‑1 (MQ=255)                                                                                                                        taCTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaatttt                       <  2:390566‑M2/141‑120 (MQ=255)                                                                                                                         aCTTTTGTTACAAGGTTTCTATGTATCCAATCTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAattat                      <  2:417090/141‑1 (MQ=255)                                                                                                                         aCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAACTAATGATTTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAattat                      >  1:350080/1‑141 (MQ=255)                                                                                                                          cTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAattatt                     >  1:61542/1‑141 (MQ=255)                                                                                                                              tgttACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGt                 >  2:297961/1‑141 (MQ=255)                                                                                                                               gttACAAGGTTTCTAtgtatccaagcgggggacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagagaca                <  2:371315‑M2/141‑127 (MQ=255)                                                                                                                                 tACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggccttt              <  1:25942‑M2/141‑129 (MQ=255)                                                                                                                                  acgcggtagcTATGTGTCCAAACCGGGGGCAATATAAACGCGCTGAGTTAATCGTACTAGCCTCTTATAGTAAAAATAATGATGGCGTAATACTCAATGAAGCAGTTGATAATGGTGCATCAGACAAATTATTAAGTAAtg             <  2:350080/132‑1 (MQ=255)                                                                                                                                  aCAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAAAAAAAAAAAAAACATATATTAAAAATAACGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCCTCAGACACATTATTaaaaaaaa             <  2:647483/141‑7 (MQ=255)                                                                                                                                   aaaGGTTTCTATGTATCCAAATTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAtgt            <  1:145294/140‑1 (MQ=255)                                                                                                                                       gTTTTTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttaggg        >  2:204374‑M2/1‑7 (MQ=255)                                                                                                                                         ttCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttagggac      >  1:560047‑M2/1‑5 (MQ=255)                                                                                                                                           cTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAGGTAATGGGaaaaaaa    >  2:192851/1‑140 (MQ=255)                                                                                                                                            tATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGa   >  1:21115/1‑141 (MQ=255)                                                                                                                                             atggatccaaactggaaacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactgtttagggacttta  <  2:559411‑M2/141‑141 (MQ=255)                                                                                                                                             aTGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGaa  <  1:243487/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             ACTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAGAA  >  CP000730/2128203‑2128483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.