BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	512620 =	102 (1.150)	66 (1.080) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA	48/180	NT	48.4%	intergenic (+688/‑173)	recR/rrs1	recombination protein RecR/16S ribosomal RNA
*	?	CP000730	1998278 =	NA (NA)	66 (1.080) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA	48/180	NT	48.4%	intergenic (‑6/+5)	USA300HOU_t0050/rrf4	tRNA‑Val/5S ribosomal RNA

Only 100 of 121 total aligned reads displayed.

ACTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATA  >  CP000730/1998138‑1998417

aCTGATTACAAGTCAGTTGCTCTACCACTTGAGCTACGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTa                                                                                                                                             >  1:252743/1‑141 (MQ=25)

aCTGATGACATGTCAGTTGCCCTACCGACTGAGCGAGGCCGGC‑AATGTGTAAGAATACATGGTGGAGAAGGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTa                                                                                                                                             <  2:799738/141‑1 (MQ=11)

      tACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGCTTTAAAACtc                                                                                                                                       >  2:353320/1‑140 (MQ=255)

         aaGTCAGTTGCTCTACCAATTGAGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGCTTTAAAACTGCCt                                                                                                                                    >  2:343096/1‑141 (MQ=255)

         aaGTCAGTTGCTCTACCAATTGAGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCt                                                                                                                                    >  1:84020/1‑141 (MQ=255)

          aGTCAGTTGCTCTACCAATTGAGCTAGGCCGGC‑AATATGTAAGAATAAATGGCGGAGAACGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTg                                                                                                                                   <  2:376812/141‑1 (MQ=255)

           gttaGTTGCTCTACCAATTGAGCTAGGCGGGC‑AATATGTAAGAATAAATGGTGGAGAATGGCGGGTTCGAACCGCCGACCCTCTGCTTGTAGGGCGGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAGAACTGCCTgt                                                                                                                                  >  2:647222/4‑140 (MQ=14)

            tgaGTTGCTCTACCAATTGAGCTAGGACGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAATACTGCCTGGc                                                                                                                                 <  1:778194/139‑1 (MQ=255)

            tCAGTTGCTCTACCAATTGAACTAGGCCCGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGc                                                                                                                                 <  2:430135/141‑1 (MQ=255)

             gttgtgcgtcagcAATTGAGCTA‑GCTGTCTAACATGGAAGAATAAATGGTGGAGAACGACAAGATCGAAAGGGCGACACTATACTAATAAGTGAGATACCTACCCAGCTGAGCTAATTCTCCGACTTAAACCTGCCTGGCa                                                                                                                                >  2:275584/13‑141 (MQ=255)

             cAGTTGCTCTACCAATTGAGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGGCTGGCa                                                                                                                                >  2:130261/1‑141 (MQ=255)

             cAGTTGCTCTACCAATTGAGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCa                                                                                                                                >  1:1020635/1‑141 (MQ=255)

               gTTGCTCTACCAATTGAGCTAGTCCGGC‑AATATGTAAGAATAAATGGTGGCGAATGACGGGTTCGAACCGCCGCCCCTCTGCTTGTAGGGCAGATGCGCTCCCACCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                              <  1:733612/141‑1 (MQ=17)

               gTTGCTCTACCAATTGAGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                              >  1:274363/1‑141 (MQ=255)

               gTTGCTCTACCAATTGAGCTAGGCCGGC‑AATATGTAAAGATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                              <  2:1911/141‑1 (MQ=255)

                        ccACTTGGGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGGATGACGGGTTCGCACCGCCGACCCTCTGCTTGTAAGGCAGCTGCTCTCCCAGCTGANCTAATTCTCCGATTTAAAACTGCCTGGCAACGTGCTActc                                                                                                                     <  2:537413/141‑1 (MQ=17)

                        ccAATTGAGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGGGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTCAAACTGCCTGGCGAAGTTCTActc                                                                                                                     >  2:558594/1‑141 (MQ=255)

                              gAGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCgg                                                                                                               <  2:327251/141‑1 (MQ=255)

                               aGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAACGACGGGCAAGACAAGACAACCCAATGATCGTAAGGCACATGTACTGCATGCTGAGCTAATTCACTGAGTTAAAACTGCCTCGCAACGTTCTACTCTAGCggg                                                                                                              >  2:616392/1‑140 (MQ=12)

                                gCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGaa                                                                                                             >  1:233854/1‑141 (MQ=255)

                                gCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCGCGGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTGCTACTCTAGCGGaa                                                                                                             >  1:973862/1‑141 (MQ=255)

                                  tcggCCGGC‑AATATGTAAAAATAAATGGTGTAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCGCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAATGTTCTACTCTAGCGGAACg                                                                                                           <  2:48854/139‑1 (MQ=255)

                                  tAGGCCGCG‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                           <  2:807492/141‑1 (MQ=255)

                                   aGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGt                                                                                                          <  2:947240/141‑1 (MQ=255)

                                   aGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGATCTCCCAGCTGAGCTAATGCTCCGATTTAAAACTGCCTGGCAACGTTATACGCTAGCGGAACgg                                                                                                          >  2:560921/1‑140 (MQ=255)

                                   aGGCCGGC‑AATATGTAAGAATAAAGGGTGGAGAAGGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGt                                                                                                          <  2:306758/141‑1 (MQ=255)

                                   aGGCCGGC‑AAGATGTAAGAATAAATGGTGGGGAGTGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGt                                                                                                          <  2:510808/141‑1 (MQ=255)

                                     gCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTGCAAACTGCCTGGCCACGTTCTACTCTAGCGGAACGTaa                                                                                                        >  2:556119/1‑141 (MQ=255)

                                        ggC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTGCGAACCGCCGACCCTCTGCTGGTAAGGCAGATGCTCTCCCAGCTGAAATAAGTATCGGAGTTAAAACTGCCTGGCCACGTTCTACTCTAGCGGGACGTAGGtt                                                                                                     >  2:962592/1‑141 (MQ=17)

                                          c‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTAGAAACGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGCGCTAATTCTCCGATTTAAAACTGGCTGCCAAAGTTCTACTCCAGCGGCACGTAAGTTCg                                                                                                   >  2:477005/1‑141 (MQ=17)

                                             atatGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGAc                                                                                                 <  1:311890/141‑1 (MQ=255)

                                             atatGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGAc                                                                                                 <  1:298309/141‑1 (MQ=255)

                                             atatGCAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGAc                                                                                                 <  1:962940/141‑1 (MQ=255)

                                             atagGTAAGAATAATGGGTGGAGAATGACGGGTTCCAACCGCCGACCCTCTTCTTGTTAGGCTGATGCTCTCCCAGCTGAGCTAATTCTCCTATTTGAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGAc                                                                                                 <  2:54891/141‑1 (MQ=14)

                                               atGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTa                                                                                               >  1:537037/1‑141 (MQ=255)

                                                tGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                              <  2:44938/141‑1 (MQ=255)

                                                        tAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACg                                                                                      <  1:540564/141‑1 (MQ=255)

                                                         aaaTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGc                                                                                     <  2:166739/141‑1 (MQ=255)

                                                             ggtagAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAg                                                                                 <  2:711834/141‑1 (MQ=255)

                                                               tggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAggg                                                                               >  1:575657/1‑140 (MQ=255)

                                                               gggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAATTTCGACTACCATCGACGCTAAGGa                                                                               <  1:679099/140‑1 (MQ=255)

                                                                 gagaATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGc                                                                             <  2:526476/141‑1 (MQ=255)

                                                                      tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCTACGCTCAGGAGCGTAAc                                                                        >  2:500260/1‑141 (MQ=255)

                                                                      tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGGGCTGAAc                                                                        >  2:648592/1‑141 (MQ=255)

                                                                      tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTGAAc                                                                        >  2:790008/1‑141 (MQ=255)

                                                                      tGACGGGTTCAAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCAGGCTACGTGCGACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAAc                                                                        >  1:770217/1‑141 (MQ=17)

                                                                       gACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACt                                                                       <  1:230867/141‑1 (MQ=255)

                                                                             ttCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCtgtg                                                                 <  2:448032/141‑1 (MQ=255)

                                                                              tCGAACCGCCGACCCTCGGCTTTTAAGCCCGCTGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCTGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACttaaacgt                                                                <  2:973862/141‑7 (MQ=14)

                                                                                  acggccgTCCCTCTGGTTGTAAGGCTGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCgg                                                            <  1:281152/138‑1 (MQ=255)

                                                                                  aCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCgg                                                            <  1:452586/141‑1 (MQ=255)

                                                                                        gACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACACTAAGGAGCTTAACTTCTGTGTTCGGCATggg                                                      <  2:260645/141‑1 (MQ=255)

                                                                                        caCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGCACCTTTAACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATggg                                                      <  1:465836/140‑1 (MQ=14)

                                                                                         aCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGa                                                     >  1:730598/1‑141 (MQ=255)

                                                                                          cccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCCTgggca                                                    >  2:196018/1‑139 (MQ=255)

                                                                                             tctGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATCTAAAACTGCCTGGCAACGTGCTACTCTAGCGGAACGAAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCCTGGGAACAg                                                 >  2:1039989/1‑141 (MQ=255)

                                                                                              ctGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAgg                                                <  1:558445/141‑1 (MQ=255)

                                                                                               tGCTTGTAAGGCAGATGCTCTCCCAGCTGGGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGgt                                               <  2:976272/141‑1 (MQ=255)

                                                                                                  ttGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGtgtg                                            <  2:1059007/141‑1 (MQ=255)

                                                                                                   tGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGa                                           <  2:881711/141‑1 (MQ=255)

                                                                                                   tGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGa                                           <  2:977862/141‑1 (MQ=255)

                                                                                                    gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                          >  1:180794/1‑141 (MQ=255)

                                                                                                      aaGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGACCAGGTGTGAcct                                        >  1:131109/1‑141 (MQ=255)

                                                                                                       aGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctc                                       <  1:153007/141‑1 (MQ=255)

                                                                                                        ggCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctcc                                      <  2:721588/141‑1 (MQ=255)

                                                                                                         gCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctcct                                     >  2:625482/1‑141 (MQ=255)

                                                                                                          ccgATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                    <  1:97642/139‑1 (MQ=255)

                                                                                                           aGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTg                                   >  1:320726/1‑141 (MQ=255)

                                                                                                            ggtGCTCACCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGc                                  <  2:78833/139‑1 (MQ=255)

                                                                                                            gATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACATCCTTGc                                  >  2:556826/1‑141 (MQ=255)

                                                                                                             tttggttcCCAGCTGAGCTAATTCTCCGATTTAAATCTGCCTGGCAACGTTCTTCTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCt                                 <  2:462277/135‑1 (MQ=255)

                                                                                                             aTGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTACCTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCt                                 >  1:328288/1‑141 (MQ=255)

                                                                                                                cttgcccAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtata                              <  1:339862/137‑1 (MQ=255)

                                                                                                                ctctCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGCTCTACTCTAGAGGAACGTAAGTTCGACTACCATCGATGCAACGAAGATTAACATCGGGGCTCGGCATGGGAACAGGGGTGACCCCCTTGCgata                              >  2:482519/1‑141 (MQ=14)

                                                                                                                 tctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTCTAg                             >  2:574390/1‑141 (MQ=255)

                                                                                                                 tcccccAGCTTGGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                             <  2:84020/138‑1 (MQ=255)

                                                                                                                  ctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTATCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAACTTACCTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTCGCTATAGt                            <  2:783442/141‑1 (MQ=255)

                                                                                                                   ccccAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTc                           <  1:287755/140‑1 (MQ=255)

                                                                                                                    cccAGCTGCGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCACCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCa                          <  1:109209/141‑1 (MQ=255)

                                                                                                                     ccAGCTGAGCTAAGTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCAc                         <  1:477005/141‑1 (MQ=255)

                                                                                                                       aGCTGAGCTAATTCGCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCa                       <  2:935946/141‑1 (MQ=255)

                                                                                                                        gCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAg                      >  2:457574/1‑141 (MQ=255)

                                                                                                                        gCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTGCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCGTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCACTAGTCACCAg                      >  2:825788/1‑141 (MQ=255)

                                                                                                                         cTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGa                     <  1:434031/141‑1 (MQ=255)

                                                                                                                         cTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGa                     <  1:940393/141‑1 (MQ=255)

                                                                                                                         cTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGa                     <  2:773355/141‑1 (MQ=255)

                                                                                                                         cTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGa                     <  1:501731/141‑1 (MQ=255)

                                                                                                                         cTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGa                     >  1:1023579/1‑141 (MQ=255)

                                                                                                                         cTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTCAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGa                     <  1:707544/141‑1 (MQ=255)

                                                                                                                         cTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCGAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGa                     <  1:279883/141‑1 (MQ=255)

                                                                                                                           gAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACAAGACa                   >  1:577984/1‑141 (MQ=255)

                                                                                                                              cTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTTGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTACCTGCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACatat                <  1:2088/141‑1 (MQ=255)

                                                                                                                              cTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGGACGTAAGTTCGACTAACATCGACGCTAAGGAGCTTAACATCTGTGTTCGGCATGGGAACAGGTGTGACGTGCTTGCTATGGTCGCCTGACatat                >  2:206985/1‑141 (MQ=14)

                                                                                                                              cTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACatat                >  2:47460/1‑141 (MQ=255)

                                                                                                                                aaTTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGGGACCTCCTTGCTATAGTCACCAGACATATGa              >  2:665167/1‑141 (MQ=255)

                                                                                                                                  ttCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAAt            <  1:847794/141‑1 (MQ=255)

                                                                                                                                   tctcCGATTTAAATCTGCCTGGCAACGTCCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACACTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATg           <  1:652049/141‑1 (MQ=255)

                                                                                                                                     tcCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTa         >  1:800256/1‑141 (MQ=40)

                                                                                                                                       cGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAt       <  2:741316/141‑1 (MQ=38)

                                                                                                                                            tAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTACTTtata  >  2:271033/1‑141 (MQ=21)

ACTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGC‑AATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATA  >  CP000730/1998138‑1998417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.