New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	211704 =	12 (0.550)	5 (0.250)	3/242	NT	28.4%	intergenic (+262/+66)	USA300HOU_0193/USA300HOU_0194	possible holo‑[acyl‑carrier‑protein] synthase/hypothetical membrane protein
	?	CP000730	211755 =	14 (0.690)					intergenic (+313/+15)	USA300HOU_0193/USA300HOU_0194	possible holo‑[acyl‑carrier‑protein] synthase/hypothetical membrane protein

TACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATCCCACACAGCAGGTA  >  CP000730/211617‑211891                                                                                                                                           |                                                                                                                                         tACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATg                                                                                                                                        >  1:195347/1‑141 (MQ=255)            ataGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAgtgt                                                                                                                             >  2:182707/1‑141 (MQ=255)                                 agtgcgacaacattttgtctatcgctataaattaaattaatacactgactaacattaacgtgagttttaaatcatcgtttgagtatgatgattgatgctcacgttaCTGTTAGTCAGTGTATTAATTTAATTTATAGTGAt                                                                                                        >  1:127848‑M2/107‑141 (MQ=255)                                  agaCTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATa                                                                                                       >  2:62775/1‑141 (MQ=255)                                     cTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGAc                                                                                                    <  2:73545/141‑1 (MQ=255)                                                     atcactataaattaaattaatacactgactaacagTAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACt                                                                                    >  1:127848‑M1/36‑141 (MQ=255)                                                        tGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAAt                                                                                 <  2:46634/141‑1 (MQ=255)                                                                                         AACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAg                                                <  1:17699‑M1/141‑1 (MQ=255)                                                                                               gttttaaatcatcgtttgagtatgatgatttaaaactcacgttaATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCt                                          >  2:61954‑M2/45‑141 (MQ=255)                                                                                               AGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCt                                          <  1:177045‑M1/141‑1 (MQ=255)                                                                                                 cATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGa                                        <  1:33971/141‑1 (MQ=255)                                                                                                   tcaatcaTCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACa                                      >  2:48397/1‑141 (MQ=255)                                                                                                    caatcaTCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAg                                     >  2:254253/1‑141 (MQ=255)                                                                                                    caatcaTCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAg                                     >  1:167555/1‑141 (MQ=255)                                                                                                     aaatcatcgtttgagtatgatgattgatgctcacgttaATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCCATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGa                                    >  1:209360‑M2/39‑141 (MQ=255)                                                                                                     aaatcatcgtttgagtatgatgattgatgctcacgttaATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGa                                    >  2:153847‑M2/39‑141 (MQ=255)                                                                                                     aaatcatcgtttgagtatgatgattgatgctcacgttaATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGa                                    >  2:149811‑M2/39‑141 (MQ=255)                                                                                                              aCTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTgg                           <  2:195828/141‑1 (MQ=255)                                                                                                               cTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGa                          >  1:56182/1‑141 (MQ=255)                                                                                                               cTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGa                          >  1:167921/1‑141 (MQ=255)                                                                                                                           tttAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATGGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATccc              >  2:50413/1‑141 (MQ=255)                                                                                                                           tttAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATccc              >  2:54863/1‑141 (MQ=255)                                                                                                                           tttAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATccc              >  2:64411/1‑141 (MQ=255)                                                                                                                                 aCTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATCCCACAcag        <  2:52684/141‑1 (MQ=255)                                                                                                                                  ctcacgttaATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATCCCACAcagc       >  1:203875‑M2/10‑141 (MQ=255)                                                                                                                                       gttaATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATCCCACACAGCAGGTa  >  1:148596‑M2/5‑141 (MQ=255)                                                                                                                                       gttaATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATCCCACACAGCAGGTa  >  1:25218‑M2/5‑141 (MQ=255)                                                                                                                                           |                                                                                                                                         TACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCATCAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAATTCAATTGTCATCATCCAGACGATATGGCCAAAGAATTCTGACAGATGCTCTTGGAATGGTTGATCCCACACAGCAGGTA  >  CP000730/211617‑211891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.