mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 52 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 36,087 | 0 | A | G | 64.8% | 356.3 / inf | 402 | C155C (TGT→TGC) | tpn | IS431mec transposase |
| * | CP000730 | 36,124 | 0 | G | A | 63.1% | 171.1 / inf | 307 | A143V (GCT→GTT) | tpn | IS431mec transposase |
| * | CP000730 | 76,322 | 0 | G | A | 62.0% | 195.4 / 313.5 | 280 | intergenic (+380/‑754) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 36,269 | 0 | C | T | 60.9% | 140.3 / inf | 416 | A95T (GCA→ACA) | tpn | IS431mec transposase |
| * | CP000730 | 76,353 | 0 | G | A | 60.4% | 143.5 / 241.8 | 204 | intergenic (+411/‑723) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 76,295 | 0 | T | C | 59.7% | 209.5 / inf | 310 | intergenic (+353/‑781) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 36,315 | 0 | G | A | 56.5% | 110.6 / inf | 424 | Y79Y (TAC→TAT) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,925 | 0 | T | A | 56.2% | 22.7 / 71.6 | 48 | intergenic (‑1008/‑160) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,928 | 0 | T | A | 56.2% | 17.5 / 76.4 | 48 | intergenic (‑1011/‑157) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,930 | 0 | T | A | 56.2% | 21.6 / 70.7 | 48 | intergenic (‑1013/‑155) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,861 | 0 | T | C | 55.6% | 28.3 / 77.7 | 64 | intergenic (‑944/‑224) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 35,970 | 0 | T | C | 54.6% | 143.6 / inf | 304 | E194E (GAA→GAG) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,848 | 0 | C | A | 54.0% | ‑5.1 / 103.9 | 63 | intergenic (‑931/‑237) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,870 | 0 | A | C | 53.8% | 34.8 / 86.9 | 65 | intergenic (‑953/‑215) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,872 | 0 | G | A | 53.8% | ‑2.0 / 93.2 | 65 | intergenic (‑955/‑213) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,873 | 0 | C | A | 53.8% | 6.1 / 111.2 | 65 | intergenic (‑956/‑212) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,875 | 0 | T | C | 53.8% | 17.9 / 84.5 | 65 | intergenic (‑958/‑210) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,866 | 0 | G | T | 53.1% | 3.4 / 112.4 | 65 | intergenic (‑949/‑219) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,917 | 0 | C | T | 52.5% | 2.4 / 83.5 | 59 | intergenic (‑1000/‑168) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,918 | 0 | A | G | 52.5% | 14.1 / 80.2 | 59 | intergenic (‑1001/‑167) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |