New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1277483 =	37 (1.000)	4 (0.120)	3/238	NT	11.7%	intergenic (+81/‑865)	pyrH/uppS	UMP kinase/di‑trans, poly‑cis‑decaprenylcistransferase
	?	CP000730	1277520 =	26 (0.760)					intergenic (+118/‑828)	pyrH/uppS	UMP kinase/di‑trans, poly‑cis‑decaprenylcistransferase

TAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGACAAAACTTCTGTAGCTGACATC  >  CP000730/1277380‑1277651                                                                                                                                             |                                                                                                                                    tAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCaa                                                                                                                                     >  2:66665/1‑141 (MQ=255)    gTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGATAACATCAGTGCAGGAAGAGCTAATTCAAAtt                                                                                                                                  <  2:312608/141‑1 (MQ=255)     tACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAAttt                                                                                                                                 >  1:408988/1‑141 (MQ=255)              tACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACgg                                                                                                                        >  2:84324/1‑141 (MQ=255)                   aataaatTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTaa                                                                                                                   <  2:175126/141‑1 (MQ=255)                         tttAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTg                                                                                                             >  1:88281/1‑141 (MQ=255)                          ttAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGa                                                                                                            >  1:313032/1‑141 (MQ=255)                          taagagGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGa                                                                                                            >  2:48429/3‑141 (MQ=255)                              agGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTAc                                                                                                        >  2:324212/1‑141 (MQ=255)                                         aatGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCAcc                                                                                             >  2:275090/1‑141 (MQ=255)                                          atGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCa                                                                                            <  2:407123/141‑1 (MQ=255)                                          atGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCa                                                                                            <  1:341894/141‑1 (MQ=255)                                          atGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCa                                                                                            <  1:54179/141‑1 (MQ=255)                                                  cATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGt                                                                                    <  1:177118/141‑1 (MQ=255)                                                    ttattaATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTac                                                                                  <  2:325818/141‑1 (MQ=255)                                                                cTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTagcaa                                                                      >  2:116182/1‑141 (MQ=255)                                                                      cAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATTAAAGCAGGAAGAGCTAATTCAAATTTATTAAACGGAGTAACAGTTGATTACTATGGTGCAACAACACCTGTACAACAATTAGCAAGCATCa                                                                >  1:214888/1‑141 (MQ=255)                                                                             gCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTcc                                                         <  1:149299/141‑1 (MQ=255)                                                                                  aatcaatcGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAg                                                    <  1:72827/141‑1 (MQ=255)                                                                                    tcaatcGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCa                                                  <  1:349535/141‑1 (MQ=255)                                                                                             aGCGTATCACGGGAATTAGCTAACATCAGTGCAGGGAGAGCTAATGCAAGTTTATCAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCACTGTTCCAGAAGCACGTTTACtt                                         <  2:123751/141‑1 (MQ=255)                                                                                              gCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTg                                        >  1:129587/1‑141 (MQ=255)                                                                                              gCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTg                                        <  2:219743/141‑1 (MQ=255)                                                                                              gCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTg                                        <  1:393426/141‑1 (MQ=255)                                                                                              gCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTg                                        <  1:30253/141‑1 (MQ=255)                                                                                              gCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTg                                        <  2:236380/141‑1 (MQ=255)                                                                                                         GAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCa                             <  1:174052‑M1/141‑1 (MQ=255)                                                                                                          aattagctcttcctgcactgatgttagctaattcaAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCAt                            >  1:139359‑M2/36‑141 (MQ=255)                                                                                                          aattagctcttcctgcactgatgttagctaattcaAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCAt                            >  1:139360‑M2/36‑141 (MQ=255)                                                                                                             TAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACg                         >  2:161971‑M1/1‑141 (MQ=255)                                                                                                              AGCTAACATCAGTGCAGGGAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGa                        <  1:197123‑M1/141‑1 (MQ=255)                                                                                                              AGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGa                        <  2:302063‑M1/141‑1 (MQ=255)                                                                                                               gctcttcctgcactgatgttagctaattcaAATTTATTAAACGGc                                                                                                                       <  2:67328‑M2/15‑1 (MQ=255)                                                                                                               gctcttcctgcactgatgttagctaattcaAATTTATTAAACGGc                                                                                                                       >  1:67328‑M2/31‑45 (MQ=255)                                                                                                               GCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGAc                       <  2:388253‑M1/141‑1 (MQ=255)                                                                                                                     aTCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGACAAAACt                 <  1:161867/141‑1 (MQ=255)                                                                                                                           gCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGACAAAACTTCTGTa           <  1:66665/141‑1 (MQ=255)                                                                                                                            cAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGACAAGACTTCTGTAg          >  2:163107/1‑141 (MQ=255)                                                                                                                                    gctaattgaAATTTATTAAACGGCGTAACAGTTGATTACTATGGGGCACCAACCCCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGACAAAACTTCTGTAGCTGACATc  >  2:409953‑M2/10‑141 (MQ=255)                                                                                                                                             |                                                                                                                                    TAGGTACGTTAATTACAAAATAAATTTAGAGGTGTAAAATAATGAGTGACATTATTAATGAAACTAAATCAAGAATGCAAAAATCAATCGAAAGCTTATCACGTGAATTAGCTAACATCAGTGCAGGAAGAGCTAATTCAAATTTATTAAACGGCGTAACAGTTGATTACTATGGTGCACCAACACCTGTACAACAATTAGCAAGCATCAATGTTCCAGAAGCACGTTTACTTGTTATTTCTCCATACGACAAAACTTCTGTAGCTGACATC  >  CP000730/1277380‑1277651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.